Wall clock time and date at job start Sat Apr 11 2020 05:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86810 * 119.99698 * 2 1 4 4 H 1.48494 * 109.46878 * 269.99777 * 3 2 1 5 5 H 1.48495 * 109.46968 * 29.99575 * 3 2 1 6 6 H 1.48498 * 109.46884 * 150.00117 * 3 2 1 7 7 C 1.38814 * 120.00291 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99924 * 163.07287 * 7 2 1 9 9 N 1.36926 * 120.00294 * 343.07852 * 7 2 1 10 10 C 1.46930 * 120.62893 * 331.84106 * 9 7 2 11 11 C 1.53186 * 108.77905 * 233.58957 * 10 9 7 12 12 C 1.53038 * 109.31164 * 305.36362 * 11 10 9 13 13 N 1.46498 * 109.46225 * 181.38352 * 12 11 10 14 14 C 1.34779 * 120.00126 * 154.97304 * 13 12 11 15 15 O 1.21344 * 120.00367 * 0.02562 * 14 13 12 16 16 C 1.49454 * 119.99722 * 180.02562 * 14 13 12 17 17 O 1.21346 * 120.00369 * 359.97438 * 16 14 13 18 18 N 1.34779 * 119.99722 * 180.02562 * 16 14 13 19 19 C 1.46498 * 120.00126 * 179.97438 * 18 16 14 20 20 C 1.52998 * 109.47480 * 179.97438 * 19 18 16 21 21 O 1.42906 * 109.46825 * 65.00277 * 20 19 18 22 22 C 1.42896 * 114.00112 * 180.02562 * 21 20 19 23 23 C 1.53778 * 113.61671 * 210.00023 * 22 21 20 24 24 C 1.53774 * 87.17276 * 220.05910 * 23 22 21 25 25 C 1.53776 * 87.08251 * 25.38864 * 24 23 22 26 26 C 1.53041 * 109.52593 * 61.37296 * 12 11 10 27 27 C 1.46930 * 120.63502 * 151.82511 * 9 7 2 28 28 H 0.96997 * 120.00270 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.58788 * 113.80060 * 10 9 7 30 30 H 1.09005 * 109.70512 * 353.45121 * 10 9 7 31 31 H 1.08999 * 109.50178 * 185.41407 * 11 10 9 32 32 H 1.08995 * 109.52713 * 65.33153 * 11 10 9 33 33 H 1.09002 * 109.46683 * 301.35771 * 12 11 10 34 34 H 0.97005 * 119.99758 * 334.97570 * 13 12 11 35 35 H 0.96999 * 119.99977 * 0.02562 * 18 16 14 36 36 H 1.09006 * 109.46969 * 59.99725 * 19 18 16 37 37 H 1.09002 * 109.47243 * 300.00672 * 19 18 16 38 38 H 1.08996 * 109.47138 * 305.00559 * 20 19 18 39 39 H 1.09003 * 109.47049 * 185.00049 * 20 19 18 40 40 H 1.09012 * 112.90603 * 341.25088 * 22 21 20 41 41 H 1.09005 * 113.61453 * 105.47053 * 23 22 21 42 42 H 1.08996 * 113.61369 * 334.65204 * 23 22 21 43 43 H 1.09001 * 113.61846 * 139.93971 * 24 23 22 44 44 H 1.09005 * 113.61421 * 270.84084 * 24 23 22 45 45 H 1.08994 * 113.61310 * 89.12063 * 25 24 23 46 46 H 1.09007 * 113.61531 * 219.93336 * 25 24 23 47 47 H 1.08999 * 109.49656 * 58.58039 * 26 12 11 48 48 H 1.09005 * 109.49781 * 178.67452 * 26 12 11 49 49 H 1.08998 * 109.57984 * 246.19989 * 27 9 7 50 50 H 1.08995 * 109.58654 * 6.47754 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2224 -0.2718 9 7 1.3702 -2.3622 0.3462 10 6 0.2262 -2.3399 1.2679 11 6 0.4976 -3.3189 2.4145 12 6 0.8121 -4.7006 1.8365 13 7 1.0398 -5.6473 2.9310 14 6 0.8359 -6.9651 2.7356 15 8 0.4643 -7.3676 1.6528 16 6 1.0677 -7.9308 3.8524 17 8 1.4398 -7.5285 4.9351 18 7 0.8643 -9.2487 3.6568 19 6 1.0919 -10.1955 4.7514 20 6 0.7898 -11.6155 4.2687 21 8 1.7245 -11.9818 3.2516 22 6 1.5291 -13.2973 2.7291 23 6 2.8258 -13.9661 2.2432 24 6 2.0107 -14.5116 1.0588 25 6 1.0641 -13.3168 1.2616 26 6 2.0677 -4.6169 0.9654 27 6 1.8141 -3.6529 -0.1978 28 1 -0.4850 0.8400 -0.0004 29 1 -0.6769 -2.6406 0.7368 30 1 0.0967 -1.3346 1.6688 31 1 -0.3830 -3.3839 3.0536 32 1 1.3470 -2.9676 3.0002 33 1 -0.0279 -5.0409 1.2309 34 1 1.3372 -5.3256 3.7965 35 1 0.5679 -9.5705 2.7911 36 1 0.4368 -9.9490 5.5870 37 1 2.1312 -10.1344 5.0744 38 1 -0.2214 -11.6542 3.8638 39 1 0.8731 -12.3091 5.1054 40 1 0.9308 -13.9299 3.3851 41 1 3.1945 -14.7424 2.9138 42 1 3.5999 -13.2567 1.9508 43 1 2.5480 -14.4870 0.1108 44 1 1.5444 -15.4767 1.2573 45 1 1.3556 -12.4288 0.7009 46 1 0.0107 -13.5684 1.1383 47 1 2.9024 -4.2529 1.5644 48 1 2.3048 -5.6058 0.5730 49 1 1.0404 -4.0605 -0.8485 50 1 2.7334 -3.5131 -0.7664 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805060809.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:13 Heat of formation + Delta-G solvation = -77.590340 kcal Electronic energy + Delta-G solvation = -29276.334967 eV Core-core repulsion = 25111.893706 eV Total energy + Delta-G solvation = -4164.441261 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.64817 -39.71547 -38.77574 -37.29713 -36.89813 -35.04288 -34.25706 -32.12173 -30.20702 -30.03435 -29.44308 -26.09031 -25.84934 -25.10572 -24.29354 -22.71799 -22.24300 -21.58575 -20.33478 -20.07107 -19.52368 -18.33094 -17.74638 -17.02276 -16.74311 -16.05506 -16.00389 -15.87683 -15.37264 -15.14373 -14.80609 -14.56933 -14.21628 -13.94251 -13.64621 -13.54336 -13.26968 -13.12500 -12.96482 -12.85185 -12.59933 -12.44526 -12.40415 -11.96346 -11.68176 -11.48841 -11.47244 -11.16891 -11.13038 -10.85766 -10.84539 -10.70798 -10.51410 -10.30531 -10.06420 -9.90798 -9.83789 -9.68017 -9.46406 -9.41428 -8.84224 -8.46652 -6.69136 -5.79945 -3.22028 1.46501 2.36807 3.14981 3.28210 3.37857 3.45028 3.47566 3.69164 4.12345 4.16008 4.32414 4.41083 4.49696 4.50081 4.56296 4.69173 4.78174 4.91065 5.15783 5.27951 5.30302 5.35787 5.38665 5.39948 5.46554 5.47535 5.52004 5.54185 5.70130 5.82234 5.85419 5.99125 6.05086 6.18715 6.28401 6.49113 6.51117 6.55713 6.73549 6.77859 6.79324 6.94649 6.99204 7.30275 7.44245 7.61705 7.76340 7.79880 8.10563 8.44169 9.20275 9.83399 10.40255 11.29114 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022432 B = 0.001850 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.902330 B =15134.123235 C =15835.190382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.252 4.252 8 H 0.066 0.934 9 N -0.592 5.592 10 C 0.175 3.825 11 C -0.148 4.148 12 C 0.148 3.852 13 N -0.690 5.690 14 C 0.503 3.497 15 O -0.524 6.524 16 C 0.508 3.492 17 O -0.524 6.524 18 N -0.698 5.698 19 C 0.120 3.880 20 C 0.047 3.953 21 O -0.371 6.371 22 C 0.060 3.940 23 C -0.137 4.137 24 C -0.143 4.143 25 C -0.158 4.158 26 C -0.140 4.140 27 C 0.148 3.852 28 H 0.254 0.746 29 H 0.022 0.978 30 H 0.093 0.907 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.408 0.592 35 H 0.416 0.584 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.087 0.913 41 H 0.070 0.930 42 H 0.091 0.909 43 H 0.075 0.925 44 H 0.081 0.919 45 H 0.092 0.908 46 H 0.069 0.931 47 H 0.061 0.939 48 H 0.055 0.945 49 H 0.021 0.979 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.566 -28.123 9.060 29.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.382 4.382 8 H 0.084 0.916 9 N -0.315 5.315 10 C 0.048 3.952 11 C -0.188 4.188 12 C 0.046 3.954 13 N -0.341 5.341 14 C 0.283 3.717 15 O -0.400 6.400 16 C 0.288 3.712 17 O -0.400 6.400 18 N -0.353 5.353 19 C -0.003 4.003 20 C -0.030 4.030 21 O -0.290 6.290 22 C 0.003 3.997 23 C -0.175 4.175 24 C -0.180 4.180 25 C -0.196 4.196 26 C -0.181 4.181 27 C 0.021 3.979 28 H 0.064 0.936 29 H 0.040 0.960 30 H 0.111 0.889 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.104 0.896 34 H 0.244 0.756 35 H 0.253 0.747 36 H 0.106 0.894 37 H 0.100 0.900 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.105 0.895 41 H 0.089 0.911 42 H 0.110 0.890 43 H 0.094 0.906 44 H 0.100 0.900 45 H 0.111 0.889 46 H 0.088 0.912 47 H 0.080 0.920 48 H 0.074 0.926 49 H 0.039 0.961 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.603 -27.834 8.990 29.256 hybrid contribution 0.191 0.594 0.161 0.645 sum 0.794 -27.239 9.151 28.746 Atomic orbital electron populations 1.70017 1.05258 1.25562 1.53930 1.25056 0.95298 0.98451 1.00858 0.86300 0.79162 0.83608 0.77720 1.21397 1.21563 1.20489 1.19174 0.92583 0.84738 1.41679 0.91645 1.44093 1.35818 1.01668 1.49942 1.20750 0.88922 0.97937 0.87587 1.22570 1.00883 0.94330 1.00986 1.21237 0.98921 0.88187 0.87080 1.46219 1.65561 1.05529 1.16815 1.19987 0.79615 0.84044 0.88073 1.90758 1.45412 1.78207 1.25645 1.20385 0.78485 0.83664 0.88617 1.90752 1.44802 1.78478 1.25957 1.45671 1.67489 1.05631 1.16464 1.21496 1.03276 0.85939 0.89591 1.22826 0.93278 0.95213 0.91650 1.88027 1.54293 1.31910 1.54725 1.23822 0.98046 0.83985 0.93891 1.23209 0.97091 0.99618 0.97581 1.22655 0.98450 0.97837 0.99099 1.23525 0.99808 0.99382 0.96851 1.22404 0.96989 0.99754 0.98915 1.20869 0.98024 0.86493 0.92502 0.93588 0.96003 0.88888 0.92493 0.91870 0.89577 0.75634 0.74741 0.89418 0.90029 0.92230 0.91275 0.89517 0.91095 0.89023 0.90606 0.90047 0.88909 0.91248 0.92028 0.92608 0.96094 0.92399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.96 11.19 55.49 0.62 -25.34 16 2 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 3 Si 0.90 21.56 29.59 -169.99 -5.03 16.53 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.25 -6.87 9.58 -15.06 -0.14 -7.01 16 8 H 0.07 1.75 7.89 -52.48 -0.41 1.34 16 9 N -0.59 -14.73 2.99 -172.32 -0.52 -15.25 16 10 C 0.17 4.07 5.30 -3.71 -0.02 4.05 16 11 C -0.15 -2.72 5.55 -26.62 -0.15 -2.87 16 12 C 0.15 2.59 2.42 -67.89 -0.16 2.43 16 13 N -0.69 -10.46 5.07 -54.20 -0.27 -10.73 16 14 C 0.50 7.65 7.85 -11.58 -0.09 7.55 16 15 O -0.52 -9.02 16.14 5.50 0.09 -8.93 16 16 C 0.51 6.81 7.89 -11.58 -0.09 6.72 16 17 O -0.52 -7.91 16.48 5.50 0.09 -7.82 16 18 N -0.70 -7.36 5.50 -60.73 -0.33 -7.69 16 19 C 0.12 0.96 6.06 -4.04 -0.02 0.93 16 20 C 0.05 0.28 5.91 37.16 0.22 0.50 16 21 O -0.37 -3.04 10.30 -35.23 -0.36 -3.40 16 22 C 0.06 0.38 4.32 -25.83 -0.11 0.27 16 23 C -0.14 -0.83 7.91 -25.92 -0.20 -1.03 16 24 C -0.14 -0.76 8.08 -25.93 -0.21 -0.97 16 25 C -0.16 -1.00 7.92 -25.83 -0.20 -1.21 16 26 C -0.14 -2.57 5.65 -26.61 -0.15 -2.72 16 27 C 0.15 3.16 6.52 -3.71 -0.02 3.14 16 28 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.09 2.41 6.07 -51.93 -0.31 2.10 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.09 1.63 7.58 -51.93 -0.39 1.24 16 34 H 0.41 5.66 8.07 -40.82 -0.33 5.33 16 35 H 0.42 4.22 7.94 -40.82 -0.32 3.90 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.09 0.40 7.87 -51.92 -0.41 -0.01 16 41 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 48 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 49 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.06 1.21 7.93 -51.93 -0.41 0.79 16 LS Contribution 406.39 15.07 6.12 6.12 Total: -1.00 -31.76 406.39 -9.54 -41.30 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -8.50 Total: 5.45 kcal Atomic # 6 Polarization: 11.21 SS G_CDS: -1.45 Total: 9.76 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: -0.50 Total: -59.02 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.18 Total: -20.15 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -31.76 -9.54 -41.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805060809.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.287 kcal (2) G-P(sol) polarization free energy of solvation -31.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds