Wall clock time and date at job start Sat Apr 11 2020 05:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99913 * 2 1 4 4 H 1.48506 * 109.47168 * 268.93343 * 3 2 1 5 5 H 1.48504 * 109.47213 * 28.93234 * 3 2 1 6 6 H 1.48505 * 109.47304 * 148.93386 * 3 2 1 7 7 C 1.38814 * 120.00064 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00158 * 343.37291 * 7 2 1 9 9 N 1.36939 * 119.99674 * 163.37276 * 7 2 1 10 10 C 1.47152 * 120.98350 * 329.40481 * 9 7 2 11 11 C 1.53295 * 108.38662 * 230.55756 * 10 9 7 12 12 O 1.42960 * 109.22294 * 307.70159 * 11 10 9 13 13 C 1.42967 * 114.16873 * 62.58181 * 12 11 10 14 14 C 1.47151 * 120.97982 * 149.43540 * 9 7 2 15 15 H 1.09009 * 109.67925 * 249.16569 * 14 9 7 16 16 C 1.52998 * 109.68418 * 9.71274 * 14 9 7 17 17 N 1.46507 * 109.47372 * 299.26071 * 16 14 9 18 18 C 1.34770 * 119.99860 * 180.02562 * 17 16 14 19 19 O 1.21279 * 120.00536 * 359.97438 * 18 17 16 20 20 C 1.50709 * 119.99601 * 179.97438 * 18 17 16 21 21 C 1.52996 * 109.47193 * 299.99741 * 20 18 17 22 22 C 1.53000 * 109.47006 * 180.02562 * 21 20 18 23 23 C 1.52995 * 109.47502 * 60.00063 * 22 21 20 24 24 C 1.50693 * 109.47603 * 179.97438 * 23 22 21 25 25 N 1.34777 * 120.00175 * 300.00069 * 24 23 22 26 26 O 1.21276 * 120.00015 * 119.99790 * 24 23 22 27 27 C 1.53004 * 109.47187 * 300.00353 * 23 22 21 28 28 C 1.53000 * 109.47188 * 59.99454 * 27 23 22 29 29 H 0.97003 * 120.00296 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.68485 * 350.28617 * 10 9 7 31 31 H 1.08998 * 109.67974 * 110.83730 * 10 9 7 32 32 H 1.09006 * 109.50754 * 67.62083 * 11 10 9 33 33 H 1.08996 * 109.51243 * 187.77666 * 11 10 9 34 34 H 1.08999 * 109.51580 * 177.49796 * 13 12 11 35 35 H 1.09001 * 109.51436 * 57.33732 * 13 12 11 36 36 H 1.09004 * 109.46878 * 59.25537 * 16 14 9 37 37 H 1.08994 * 109.47472 * 179.25626 * 16 14 9 38 38 H 0.96999 * 119.99352 * 359.97438 * 17 16 14 39 39 H 1.08996 * 109.46744 * 60.00265 * 20 18 17 40 40 H 1.08994 * 109.47190 * 299.99863 * 21 20 18 41 41 H 1.09002 * 109.47361 * 60.00027 * 21 20 18 42 42 H 1.09004 * 109.47024 * 299.99838 * 22 21 20 43 43 H 1.09004 * 109.47000 * 180.02562 * 22 21 20 44 44 H 1.09003 * 109.46747 * 59.99525 * 23 22 21 45 45 H 0.96998 * 119.99558 * 359.97438 * 25 24 23 46 46 H 0.96998 * 119.99930 * 179.97438 * 25 24 23 47 47 H 1.09004 * 109.46666 * 299.99813 * 27 23 22 48 48 H 1.08997 * 109.47159 * 179.97438 * 27 23 22 49 49 H 1.09004 * 109.47000 * 180.02562 * 28 27 23 50 50 H 1.08993 * 109.47447 * 60.00285 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5202 2.0334 -1.3999 5 1 1.4365 2.6591 0.6773 6 1 3.5363 1.4468 0.7225 7 6 2.0103 -1.2022 0.0005 8 1 1.5042 -2.1178 0.2686 9 7 3.3367 -1.2270 -0.3388 10 6 3.8917 -0.2584 -1.2976 11 6 4.6797 -1.0295 -2.3626 12 8 5.6182 -1.8948 -1.7192 13 6 5.0197 -2.8990 -0.8961 14 6 4.2491 -2.2236 0.2440 15 1 4.9491 -1.7303 0.9185 16 6 3.4434 -3.2722 1.0135 17 7 2.7029 -2.6208 2.0969 18 6 1.9193 -3.3533 2.9129 19 8 1.8268 -4.5516 2.7501 20 6 1.1580 -2.6833 4.0277 21 6 2.1424 -1.9981 4.9776 22 6 1.3695 -1.3184 6.1097 23 6 0.5646 -2.3675 6.8793 24 6 -0.1962 -1.6982 7.9947 25 7 0.4688 -1.0280 8.9565 26 8 -1.4068 -1.7626 8.0268 27 6 -0.4198 -3.0529 5.9294 28 6 0.3531 -3.7325 4.7973 29 1 -0.4851 0.8400 -0.0004 30 1 3.0809 0.2959 -1.7703 31 1 4.5556 0.4327 -0.7784 32 1 3.9921 -1.6224 -2.9660 33 1 5.2124 -0.3257 -3.0020 34 1 5.7971 -3.5401 -0.4804 35 1 4.3334 -3.4986 -1.4942 36 1 2.7423 -3.7603 0.3365 37 1 4.1213 -4.0157 1.4325 38 1 2.7771 -1.6625 2.2272 39 1 0.4798 -1.9399 3.6088 40 1 2.8205 -2.7415 5.3964 41 1 2.7162 -1.2509 4.4292 42 1 0.6910 -0.5750 5.6912 43 1 2.0708 -0.8298 6.7861 44 1 1.2431 -3.1110 7.2977 45 1 1.4371 -0.9769 8.9310 46 1 -0.0210 -0.5969 9.6743 47 1 -1.0983 -2.3094 5.5109 48 1 -0.9930 -3.8005 6.4776 49 1 -0.3483 -4.2204 4.1203 50 1 1.0315 -4.4759 5.2157 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050992001.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:53 Heat of formation + Delta-G solvation = -110.992132 kcal Electronic energy + Delta-G solvation = -31353.387670 eV Core-core repulsion = 27187.497999 eV Total energy + Delta-G solvation = -4165.889671 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.35412 -39.43583 -38.68435 -36.96613 -35.44800 -33.89675 -33.67734 -31.94534 -31.37117 -30.75014 -30.53440 -27.57877 -25.90214 -24.19971 -23.45603 -22.62146 -22.23072 -21.07618 -19.97961 -19.81893 -19.31151 -17.67660 -17.15261 -16.74573 -16.33878 -16.04136 -15.94127 -15.43692 -15.14079 -14.96050 -14.60670 -14.45070 -14.24441 -14.05082 -13.90803 -13.76629 -13.31695 -13.28780 -12.67326 -12.59203 -12.32672 -12.27097 -12.10492 -11.86299 -11.59299 -11.36807 -11.18662 -11.16717 -11.05299 -10.80510 -10.58488 -10.42137 -10.37702 -10.11741 -9.93017 -9.87270 -9.86315 -9.67301 -9.46388 -9.08069 -8.72698 -8.27184 -7.06558 -6.07949 -3.51912 2.50952 3.17870 3.25373 3.34928 3.36327 3.36847 3.79264 4.26317 4.37204 4.53303 4.61787 4.64167 4.65893 5.11256 5.14035 5.17180 5.19830 5.32063 5.38608 5.42140 5.50472 5.52331 5.54780 5.63617 5.75361 5.81300 5.86468 5.87671 5.92952 5.95912 6.01684 6.06553 6.09762 6.17235 6.21281 6.28760 6.31682 6.42495 6.47695 6.52980 6.59453 6.69666 7.12314 7.12944 7.56188 7.76842 8.10825 8.19756 8.24979 8.74583 8.88427 9.54074 9.91087 11.05812 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014350 B = 0.003305 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.702397 B = 8469.100398 C = 9406.563199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.031 3.969 3 Si 0.880 3.120 4 H -0.288 1.288 5 H -0.303 1.303 6 H -0.271 1.271 7 C -0.268 4.268 8 H 0.098 0.902 9 N -0.606 5.606 10 C 0.091 3.909 11 C 0.046 3.954 12 O -0.388 6.388 13 C 0.054 3.946 14 C 0.129 3.871 15 H 0.045 0.955 16 C 0.136 3.864 17 N -0.695 5.695 18 C 0.518 3.482 19 O -0.564 6.564 20 C -0.109 4.109 21 C -0.106 4.106 22 C -0.108 4.108 23 C -0.108 4.108 24 C 0.521 3.479 25 N -0.859 5.859 26 O -0.542 6.542 27 C -0.100 4.100 28 C -0.095 4.095 29 H 0.264 0.736 30 H 0.082 0.918 31 H 0.034 0.966 32 H 0.052 0.948 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.052 0.948 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.411 0.589 39 H 0.104 0.896 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.067 0.933 44 H 0.098 0.902 45 H 0.401 0.599 46 H 0.398 0.602 47 H 0.073 0.927 48 H 0.070 0.930 49 H 0.074 0.926 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.928 -1.922 11.844 14.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.170 4.170 3 Si 0.711 3.289 4 H -0.215 1.215 5 H -0.231 1.231 6 H -0.196 1.196 7 C -0.396 4.396 8 H 0.115 0.885 9 N -0.333 5.333 10 C -0.035 4.035 11 C -0.032 4.032 12 O -0.307 6.307 13 C -0.025 4.025 14 C 0.022 3.978 15 H 0.063 0.937 16 C 0.012 3.988 17 N -0.345 5.345 18 C 0.304 3.696 19 O -0.443 6.443 20 C -0.130 4.130 21 C -0.144 4.144 22 C -0.146 4.146 23 C -0.129 4.129 24 C 0.306 3.694 25 N -0.422 5.422 26 O -0.418 6.418 27 C -0.138 4.138 28 C -0.133 4.133 29 H 0.074 0.926 30 H 0.100 0.900 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.248 0.752 39 H 0.122 0.878 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.086 0.914 44 H 0.116 0.884 45 H 0.229 0.771 46 H 0.229 0.771 47 H 0.091 0.909 48 H 0.089 0.911 49 H 0.093 0.907 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.113 -2.803 11.555 13.855 hybrid contribution 0.427 1.910 0.228 1.970 sum 7.540 -0.893 11.783 14.017 Atomic orbital electron populations 1.69796 1.05589 1.26658 1.52186 1.25333 0.95142 0.97373 0.99103 0.87037 0.79595 0.84796 0.77495 1.21510 1.23127 1.19640 1.19025 0.82660 0.94789 1.43103 0.88485 1.44435 1.06354 1.35400 1.47125 1.22058 0.97269 0.92804 0.91341 1.23068 0.92143 0.93153 0.94860 1.87825 1.33443 1.45664 1.63754 1.22920 0.97175 0.89973 0.92449 1.21445 0.92041 0.90816 0.93496 0.93713 1.21112 0.94623 0.94156 0.88944 1.45948 1.46148 1.12248 1.30197 1.20415 0.79260 0.87061 0.82868 1.90626 1.65036 1.15155 1.73526 1.21340 0.97911 0.99297 0.94439 1.21485 0.97282 0.99761 0.95905 1.21530 0.98659 0.97153 0.97272 1.21409 0.98493 0.98630 0.94403 1.20815 0.88055 0.77735 0.82762 1.43933 1.11494 1.57562 1.29257 1.90743 1.14376 1.60300 1.76392 1.21396 0.96813 1.00096 0.95484 1.21317 0.98803 0.96736 0.96417 0.92576 0.90043 0.94844 0.93005 0.89771 0.89398 0.92921 0.91267 0.92230 0.75171 0.87751 0.91364 0.90787 0.90750 0.91413 0.88403 0.77097 0.77135 0.90866 0.91114 0.90707 0.91443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.43 13.97 55.49 0.78 -24.65 16 2 C 0.03 0.80 5.29 -17.43 -0.09 0.71 16 3 Si 0.88 20.44 24.28 -169.99 -4.13 16.31 16 4 H -0.29 -6.57 6.54 56.52 0.37 -6.21 16 5 H -0.30 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.27 -6.13 6.64 56.52 0.38 -5.76 16 7 C -0.27 -6.55 7.54 -15.06 -0.11 -6.67 16 8 H 0.10 2.61 5.98 -52.49 -0.31 2.30 16 9 N -0.61 -12.86 2.78 -164.30 -0.46 -13.32 16 10 C 0.09 1.83 4.38 -3.53 -0.02 1.81 16 11 C 0.05 0.79 6.98 37.31 0.26 1.05 16 12 O -0.39 -6.78 10.74 -35.23 -0.38 -7.16 16 13 C 0.05 0.86 6.29 37.31 0.23 1.09 16 14 C 0.13 2.28 3.21 -67.42 -0.22 2.06 16 15 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 16 C 0.14 2.38 4.44 -4.04 -0.02 2.36 16 17 N -0.69 -12.36 3.66 -60.29 -0.22 -12.58 16 18 C 0.52 9.26 7.15 -10.98 -0.08 9.18 16 19 O -0.56 -11.67 15.98 5.56 0.09 -11.58 16 20 C -0.11 -1.59 2.53 -91.77 -0.23 -1.82 16 21 C -0.11 -1.20 5.10 -26.73 -0.14 -1.33 16 22 C -0.11 -1.04 5.10 -26.73 -0.14 -1.17 16 23 C -0.11 -1.08 2.52 -91.78 -0.23 -1.31 16 24 C 0.52 5.78 7.43 -10.99 -0.08 5.70 16 25 N -0.86 -5.95 8.77 31.22 0.27 -5.67 16 26 O -0.54 -8.47 16.82 5.56 0.09 -8.37 16 27 C -0.10 -1.24 4.49 -26.73 -0.12 -1.36 16 28 C -0.09 -1.30 4.49 -26.73 -0.12 -1.42 16 29 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 30 H 0.08 1.78 4.89 -51.93 -0.25 1.52 16 31 H 0.03 0.68 6.82 -51.93 -0.35 0.33 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 35 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.07 1.38 7.56 -51.93 -0.39 0.98 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.41 7.46 6.75 -40.82 -0.28 7.18 16 39 H 0.10 1.70 8.14 -51.93 -0.42 1.27 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.84 7.56 -51.93 -0.39 0.45 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.07 0.47 7.57 -51.93 -0.39 0.08 16 44 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.40 1.63 8.25 -40.82 -0.34 1.29 16 46 H 0.40 2.41 8.93 -40.82 -0.36 2.05 16 47 H 0.07 1.02 8.10 -51.93 -0.42 0.60 16 48 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 49 H 0.07 1.15 8.10 -51.93 -0.42 0.72 16 50 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 LS Contribution 380.66 15.07 5.74 5.74 Total: -1.00 -32.80 380.66 -7.49 -40.29 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: -8.18 Total: 12.12 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: -1.10 Total: 8.88 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: 0.37 Total: -56.22 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -0.20 Total: -27.12 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.13 Total: 16.31 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.80 -7.49 -40.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050992001.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.704 kcal (2) G-P(sol) polarization free energy of solvation -32.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds