Wall clock time and date at job start Sat Apr 11 2020 05:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 120.00141 * 2 1 4 4 H 1.48505 * 109.47127 * 356.98019 * 3 2 1 5 5 H 1.48500 * 109.47254 * 116.98221 * 3 2 1 6 6 H 1.48497 * 109.47227 * 236.98359 * 3 2 1 7 7 C 1.38812 * 120.00233 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00176 * 189.34231 * 7 2 1 9 9 N 1.36933 * 119.99866 * 9.33186 * 7 2 1 10 10 C 1.47151 * 120.98262 * 33.15803 * 9 7 2 11 11 C 1.53299 * 108.38318 * 129.44042 * 10 9 7 12 12 O 1.42960 * 109.22053 * 52.30858 * 11 10 9 13 13 C 1.42962 * 114.16612 * 297.41240 * 12 11 10 14 14 C 1.47151 * 120.98409 * 212.87938 * 9 7 2 15 15 H 1.09005 * 109.68547 * 110.83666 * 14 9 7 16 16 C 1.52998 * 109.68303 * 350.27999 * 14 9 7 17 17 N 1.46504 * 109.46869 * 60.89788 * 16 14 9 18 18 C 1.34780 * 120.00098 * 173.79863 * 17 16 14 19 19 O 1.21284 * 119.99556 * 4.49021 * 18 17 16 20 20 C 1.50699 * 120.00221 * 184.48869 * 18 17 16 21 21 C 1.52997 * 109.47050 * 294.24947 * 20 18 17 22 22 C 1.53006 * 109.47293 * 300.00029 * 21 20 18 23 23 C 1.52996 * 109.46971 * 300.00252 * 22 21 20 24 24 C 1.50700 * 109.47328 * 180.02562 * 23 22 21 25 25 N 1.34769 * 120.00270 * 59.99099 * 24 23 22 26 26 O 1.21279 * 119.99835 * 240.00323 * 24 23 22 27 27 C 1.52997 * 109.47318 * 59.99763 * 23 22 21 28 28 C 1.52996 * 109.47004 * 174.24823 * 20 18 17 29 29 H 0.97002 * 119.99733 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.68584 * 249.16858 * 10 9 7 31 31 H 1.09003 * 109.68254 * 9.68248 * 10 9 7 32 32 H 1.09006 * 109.50965 * 172.22959 * 11 10 9 33 33 H 1.08997 * 109.51064 * 292.32747 * 11 10 9 34 34 H 1.09001 * 109.51347 * 182.50853 * 13 12 11 35 35 H 1.08997 * 109.51410 * 302.66511 * 13 12 11 36 36 H 1.09000 * 109.47340 * 180.90225 * 16 14 9 37 37 H 1.08998 * 109.47107 * 300.90597 * 16 14 9 38 38 H 0.96994 * 119.99904 * 353.80424 * 17 16 14 39 39 H 1.08997 * 109.46772 * 54.24827 * 20 18 17 40 40 H 1.09006 * 109.47383 * 59.99570 * 21 20 18 41 41 H 1.08993 * 109.47346 * 180.02562 * 21 20 18 42 42 H 1.08999 * 109.47534 * 179.97438 * 22 21 20 43 43 H 1.09006 * 109.47082 * 59.99907 * 22 21 20 44 44 H 1.09006 * 109.46935 * 299.99744 * 23 22 21 45 45 H 0.96998 * 120.00016 * 0.02562 * 25 24 23 46 46 H 0.96998 * 120.00263 * 180.02562 * 25 24 23 47 47 H 1.09006 * 109.47383 * 180.02562 * 27 23 22 48 48 H 1.08993 * 109.47346 * 60.00031 * 27 23 22 49 49 H 1.09000 * 109.47256 * 179.97438 * 28 20 18 50 50 H 1.09000 * 109.47720 * 300.00049 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2869 2.7455 -0.0738 5 1 3.0479 1.7288 1.2477 6 1 3.1584 1.6650 -1.1740 7 6 2.0103 -1.2021 -0.0005 8 1 3.0795 -1.2084 0.1513 9 7 1.3393 -2.3801 -0.1934 10 6 0.1563 -2.4439 -1.0663 11 6 0.3462 -3.6007 -2.0541 12 8 0.6652 -4.7909 -1.3292 13 6 1.8907 -4.7193 -0.5966 14 6 1.7833 -3.6208 0.4614 15 1 1.0582 -3.9155 1.2200 16 6 3.1500 -3.3993 1.1124 17 7 3.0431 -2.3473 2.1264 18 6 4.0959 -2.0666 2.9199 19 8 5.1564 -2.6272 2.7411 20 6 3.9552 -1.0561 4.0290 21 6 3.7080 0.3292 3.4285 22 6 4.8875 0.7151 2.5336 23 6 6.1714 0.7414 3.3653 24 6 7.3331 1.1221 2.4841 25 7 7.3342 2.3091 1.8458 26 8 8.2670 0.3602 2.3491 27 6 6.4186 -0.6439 3.9658 28 6 5.2391 -1.0298 4.8607 29 1 -0.4850 0.8401 -0.0004 30 1 -0.7354 -2.6179 -0.4641 31 1 0.0527 -1.5067 -1.6132 32 1 -0.5744 -3.7532 -2.6174 33 1 1.1584 -3.3631 -2.7411 34 1 2.0814 -5.6765 -0.1113 35 1 2.7091 -4.4862 -1.2778 36 1 3.4829 -4.3247 1.5825 37 1 3.8704 -3.0987 0.3517 38 1 2.2147 -1.8529 2.2268 39 1 3.1149 -1.3311 4.6665 40 1 2.7933 0.3104 2.8359 41 1 3.6067 1.0601 4.2307 42 1 4.7112 1.7018 2.1054 43 1 4.9892 -0.0158 1.7313 44 1 6.0697 1.4723 4.1676 45 1 6.5873 2.9185 1.9538 46 1 8.0817 2.5539 1.2783 47 1 7.3331 -0.6250 4.5587 48 1 6.5203 -1.3747 3.1636 49 1 5.1376 -0.2986 5.6627 50 1 5.4153 -2.0167 5.2885 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050992003.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:56 Heat of formation + Delta-G solvation = -108.207058 kcal Electronic energy + Delta-G solvation = -32548.874146 eV Core-core repulsion = 28383.105245 eV Total energy + Delta-G solvation = -4165.768901 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.48769 -39.21413 -38.47173 -36.56504 -35.26648 -33.68480 -33.56796 -31.88614 -30.94261 -30.53949 -30.21752 -27.25685 -25.80010 -23.92994 -23.49554 -22.47337 -21.98722 -21.15312 -19.92266 -19.73749 -18.95208 -17.47820 -16.88746 -16.53208 -16.05931 -15.90697 -15.73806 -15.54291 -14.81996 -14.64480 -14.56138 -14.21013 -14.06658 -13.99380 -13.61094 -13.41109 -13.28157 -12.96440 -12.64599 -12.51630 -12.34252 -12.06404 -11.80364 -11.74236 -11.56537 -11.02662 -10.97507 -10.82496 -10.74304 -10.60207 -10.43581 -10.41490 -10.21553 -10.09067 -9.93754 -9.69430 -9.66108 -9.59995 -9.14144 -8.84504 -8.68307 -8.21797 -6.75174 -5.96372 -3.48290 2.73991 3.15895 3.22102 3.28964 3.29739 3.59605 3.84095 4.27730 4.51147 4.76470 4.82516 4.88216 5.11910 5.18412 5.22000 5.26186 5.34637 5.48251 5.55291 5.61120 5.62783 5.68373 5.72184 5.86182 5.93105 5.99691 6.01777 6.10925 6.13890 6.18202 6.23511 6.24262 6.30631 6.37561 6.39842 6.48473 6.51750 6.74237 6.77817 6.88042 7.03193 7.23905 7.35130 7.44210 7.64617 7.84162 8.23826 8.30207 8.33628 8.91047 9.00154 9.60053 10.21406 11.09728 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012627 B = 0.004537 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.890001 B = 6169.613005 C = 7221.712262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.011 3.989 3 Si 0.883 3.117 4 H -0.294 1.294 5 H -0.255 1.255 6 H -0.286 1.286 7 C -0.256 4.256 8 H 0.072 0.928 9 N -0.591 5.591 10 C 0.145 3.855 11 C 0.034 3.966 12 O -0.392 6.392 13 C 0.056 3.944 14 C 0.125 3.875 15 H 0.041 0.959 16 C 0.136 3.864 17 N -0.697 5.697 18 C 0.511 3.489 19 O -0.554 6.554 20 C -0.109 4.109 21 C -0.109 4.109 22 C -0.112 4.112 23 C -0.106 4.106 24 C 0.522 3.478 25 N -0.860 5.860 26 O -0.542 6.542 27 C -0.116 4.116 28 C -0.093 4.093 29 H 0.256 0.744 30 H 0.030 0.970 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.040 0.960 34 H 0.083 0.917 35 H 0.046 0.954 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.416 0.584 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.090 0.910 45 H 0.400 0.600 46 H 0.397 0.603 47 H 0.059 0.941 48 H 0.109 0.891 49 H 0.062 0.938 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.783 2.667 6.375 8.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.189 4.189 3 Si 0.712 3.288 4 H -0.221 1.221 5 H -0.181 1.181 6 H -0.213 1.213 7 C -0.385 4.385 8 H 0.090 0.910 9 N -0.316 5.316 10 C 0.020 3.980 11 C -0.044 4.044 12 O -0.311 6.311 13 C -0.024 4.024 14 C 0.018 3.982 15 H 0.058 0.942 16 C 0.012 3.988 17 N -0.349 5.349 18 C 0.297 3.703 19 O -0.434 6.434 20 C -0.130 4.130 21 C -0.147 4.147 22 C -0.150 4.150 23 C -0.128 4.128 24 C 0.307 3.693 25 N -0.423 5.423 26 O -0.418 6.418 27 C -0.153 4.153 28 C -0.131 4.131 29 H 0.066 0.934 30 H 0.048 0.952 31 H 0.107 0.893 32 H 0.097 0.903 33 H 0.058 0.942 34 H 0.101 0.899 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.255 0.745 39 H 0.110 0.890 40 H 0.105 0.895 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.109 0.891 45 H 0.228 0.772 46 H 0.228 0.772 47 H 0.078 0.922 48 H 0.128 0.872 49 H 0.080 0.920 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.774 1.622 6.294 8.694 hybrid contribution -0.081 2.023 -0.383 2.060 sum 5.693 3.644 5.911 8.980 Atomic orbital electron populations 1.69969 1.05268 1.25778 1.53193 1.25207 0.95271 0.98198 1.00197 0.86776 0.79258 0.83459 0.79316 1.22064 1.18085 1.21288 1.19168 0.90973 0.83140 1.45232 0.91040 1.44039 1.32439 1.03803 1.51346 1.21388 0.89153 0.96215 0.91288 1.23348 0.99184 0.87054 0.94771 1.87803 1.40803 1.37315 1.65174 1.22797 0.86769 0.98650 0.94139 1.21347 0.93904 0.89271 0.93632 0.94177 1.21120 0.97216 0.89886 0.90616 1.46149 1.16525 1.37792 1.34415 1.20474 0.83909 0.82985 0.82939 1.90561 1.27058 1.53327 1.72450 1.21340 1.00097 0.95322 0.96258 1.21551 0.99242 0.94571 0.99321 1.21671 0.92440 1.02577 0.98263 1.21409 0.93355 1.00363 0.97626 1.20814 0.87972 0.80682 0.79787 1.43936 1.26032 1.20460 1.51905 1.90723 1.37190 1.50497 1.63366 1.21691 0.96981 0.95332 1.01303 1.21304 0.93277 1.01624 0.96906 0.93417 0.95223 0.89269 0.90284 0.94170 0.89918 0.93588 0.92316 0.91904 0.74469 0.88961 0.89535 0.91210 0.91229 0.90856 0.89147 0.77170 0.77249 0.92235 0.87245 0.91969 0.91335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.95 11.21 55.49 0.62 -22.33 16 2 C 0.01 0.27 5.08 -17.43 -0.09 0.18 16 3 Si 0.88 18.35 29.18 -169.99 -4.96 13.39 16 4 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.26 -4.57 3.50 56.52 0.20 -4.37 16 6 H -0.29 -6.33 7.11 56.52 0.40 -5.92 16 7 C -0.26 -5.93 6.86 -15.06 -0.10 -6.03 16 8 H 0.07 1.70 5.90 -52.49 -0.31 1.39 16 9 N -0.59 -13.04 3.03 -164.54 -0.50 -13.54 16 10 C 0.14 3.20 5.37 -3.53 -0.02 3.18 16 11 C 0.03 0.65 6.98 37.31 0.26 0.91 16 12 O -0.39 -7.56 10.74 -35.23 -0.38 -7.94 16 13 C 0.06 0.97 6.27 37.10 0.23 1.21 16 14 C 0.13 2.39 3.21 -67.64 -0.22 2.18 16 15 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 16 C 0.14 2.47 4.44 -4.04 -0.02 2.45 16 17 N -0.70 -12.42 3.96 -60.29 -0.24 -12.66 16 18 C 0.51 8.82 5.65 -10.98 -0.06 8.75 16 19 O -0.55 -11.07 13.48 5.55 0.07 -11.00 16 20 C -0.11 -1.50 3.00 -91.78 -0.28 -1.78 16 21 C -0.11 -1.49 5.13 -26.73 -0.14 -1.62 16 22 C -0.11 -1.62 4.01 -26.73 -0.11 -1.72 16 23 C -0.11 -1.41 2.52 -91.78 -0.23 -1.65 16 24 C 0.52 7.67 7.43 -10.99 -0.08 7.59 16 25 N -0.86 -9.18 8.77 31.22 0.27 -8.90 16 26 O -0.54 -10.24 16.82 5.56 0.09 -10.14 16 27 C -0.12 -1.73 4.20 -26.73 -0.11 -1.84 16 28 C -0.09 -1.20 5.13 -26.73 -0.14 -1.34 16 29 H 0.26 6.47 8.31 -40.82 -0.34 6.13 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.09 2.16 6.44 -51.93 -0.33 1.83 16 32 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.05 0.81 8.13 -51.93 -0.42 0.39 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.06 1.25 7.54 -51.93 -0.39 0.86 16 38 H 0.42 7.81 6.74 -40.82 -0.28 7.54 16 39 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.09 1.36 6.80 -51.93 -0.35 1.00 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.07 0.93 6.15 -51.93 -0.32 0.61 16 43 H 0.07 1.31 7.22 -51.93 -0.37 0.93 16 44 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.40 3.27 8.25 -40.82 -0.34 2.93 16 46 H 0.40 3.74 8.93 -40.82 -0.36 3.38 16 47 H 0.06 0.87 8.10 -51.93 -0.42 0.45 16 48 H 0.11 2.06 5.26 -51.93 -0.27 1.79 16 49 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 50 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 373.51 15.07 5.63 5.63 Total: -1.00 -29.93 373.51 -8.65 -38.58 By element: Atomic # 1 Polarization: 26.62 SS G_CDS: -8.16 Total: 18.45 kcal Atomic # 6 Polarization: 11.56 SS G_CDS: -1.10 Total: 10.46 kcal Atomic # 7 Polarization: -57.59 SS G_CDS: 0.16 Total: -57.43 kcal Atomic # 8 Polarization: -28.88 SS G_CDS: -0.21 Total: -29.09 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -4.96 Total: 13.39 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.93 -8.65 -38.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050992003.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.627 kcal (2) G-P(sol) polarization free energy of solvation -29.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds