Wall clock time and date at job start Sat Apr 11 2020 05:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00296 * 2 1 4 4 H 1.48507 * 109.47023 * 275.32891 * 3 2 1 5 5 H 1.48505 * 109.47045 * 35.32429 * 3 2 1 6 6 H 1.48492 * 109.47082 * 155.32622 * 3 2 1 7 7 C 1.38817 * 119.99458 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00362 * 337.75145 * 7 2 1 9 9 N 1.36938 * 119.99395 * 157.75702 * 7 2 1 10 10 C 1.47760 * 121.65467 * 323.66706 * 9 7 2 11 11 C 1.53005 * 108.78854 * 276.56130 * 10 9 7 12 12 N 1.47117 * 109.32359 * 301.51920 * 11 10 9 13 13 C 1.35503 * 118.11036 * 101.27304 * 12 11 10 14 14 O 1.21288 * 120.23594 * 0.65871 * 13 12 11 15 15 C 1.50700 * 119.52829 * 180.38288 * 13 12 11 16 16 C 1.53014 * 109.46197 * 114.09254 * 15 13 12 17 17 N 1.47740 * 108.78779 * 305.18545 * 16 15 13 18 18 C 1.34782 * 121.64994 * 271.92358 * 17 16 15 19 19 O 1.21281 * 119.99914 * 176.00612 * 18 17 16 20 20 C 1.50697 * 120.00172 * 356.00182 * 18 17 16 21 21 H 1.09002 * 109.52051 * 53.40853 * 20 18 17 22 22 C 1.53173 * 109.52340 * 173.54034 * 20 18 17 23 23 C 1.53185 * 109.03475 * 176.88833 * 22 20 18 24 24 C 1.53084 * 109.16306 * 303.01756 * 23 22 20 25 25 O 1.42906 * 109.41583 * 57.60514 * 24 23 22 26 26 C 1.42893 * 114.10182 * 298.84351 * 25 24 23 27 27 C 1.47778 * 116.70169 * 91.89922 * 17 16 15 28 28 C 1.47749 * 121.64555 * 143.64575 * 9 7 2 29 29 H 0.97000 * 119.99756 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.58430 * 36.35443 * 10 9 7 31 31 H 1.08999 * 109.58416 * 156.62491 * 10 9 7 32 32 H 1.08999 * 109.52514 * 61.46212 * 11 10 9 33 33 H 1.09001 * 109.52839 * 181.59547 * 11 10 9 34 34 H 0.96995 * 120.94320 * 281.76929 * 12 11 10 35 35 H 1.08994 * 109.47377 * 234.09001 * 15 13 12 36 36 H 1.08999 * 109.46706 * 354.09268 * 15 13 12 37 37 H 1.08994 * 109.58508 * 64.97972 * 16 15 13 38 38 H 1.08998 * 109.58388 * 185.25400 * 16 15 13 39 39 H 1.08998 * 109.54135 * 296.74889 * 22 20 18 40 40 H 1.08993 * 109.54406 * 56.93005 * 22 20 18 41 41 H 1.08998 * 109.52119 * 62.92746 * 23 22 20 42 42 H 1.08996 * 109.51683 * 183.04690 * 23 22 20 43 43 H 1.09001 * 109.48640 * 177.59186 * 24 23 22 44 44 H 1.09004 * 109.48019 * 297.62961 * 24 23 22 45 45 H 1.09002 * 109.48052 * 301.17503 * 26 25 24 46 46 H 1.08997 * 109.48355 * 181.13528 * 26 25 24 47 47 H 1.09000 * 109.57951 * 349.08969 * 27 17 16 48 48 H 1.08999 * 109.58478 * 109.50646 * 27 17 16 49 49 H 1.09002 * 109.58415 * 286.55903 * 28 9 7 50 50 H 1.08998 * 109.69113 * 166.22075 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3852 2.1114 -1.3941 5 1 1.5085 2.6176 0.8096 6 1 3.5995 1.4102 0.5844 7 6 2.0102 -1.2023 -0.0005 8 1 1.5305 -2.1028 0.3532 9 7 3.3031 -1.2462 -0.4495 10 6 3.7583 -0.4172 -1.5848 11 6 3.4054 -1.1330 -2.8903 12 7 4.0477 -2.4565 -2.9088 13 6 3.2875 -3.5392 -2.6157 14 8 2.1095 -3.4070 -2.3592 15 6 3.9148 -4.9094 -2.6168 16 6 3.9071 -5.4748 -1.1950 17 7 4.5721 -4.5097 -0.2955 18 6 5.9043 -4.5345 -0.0923 19 8 6.4288 -3.6838 0.5949 20 6 6.7421 -5.6192 -0.7188 21 1 6.5529 -5.6516 -1.7918 22 6 8.2252 -5.3291 -0.4690 23 6 9.0623 -6.4769 -1.0420 24 6 8.6124 -7.7939 -0.4043 25 8 7.2176 -7.9875 -0.6475 26 6 6.3819 -6.9694 -0.0935 27 6 3.7046 -3.5155 0.3698 28 6 4.3121 -2.1245 0.1778 29 1 -0.4850 0.8401 0.0004 30 1 3.2597 0.5515 -1.5530 31 1 4.8373 -0.2749 -1.5238 32 1 2.3242 -1.2529 -2.9593 33 1 3.7614 -0.5448 -3.7361 34 1 4.9902 -2.5505 -3.1178 35 1 3.3467 -5.5686 -3.2731 36 1 4.9421 -4.8383 -2.9741 37 1 2.8787 -5.6294 -0.8689 38 1 4.4428 -6.4239 -1.1763 39 1 8.5019 -4.3959 -0.9596 40 1 8.4048 -5.2448 0.6028 41 1 8.9202 -6.5277 -2.1215 42 1 10.1156 -6.3051 -0.8209 43 1 9.1753 -8.6196 -0.8396 44 1 8.7923 -7.7576 0.6702 45 1 6.5327 -6.9223 0.9850 46 1 5.3380 -7.2009 -0.3050 47 1 2.7094 -3.5440 -0.0739 48 1 3.6390 -3.7419 1.4340 49 1 4.6013 -1.7155 1.1459 50 1 5.1890 -2.1946 -0.4658 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070945877.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:02 Heat of formation + Delta-G solvation = -67.842653 kcal Electronic energy + Delta-G solvation = -33037.263573 eV Core-core repulsion = 28873.245004 eV Total energy + Delta-G solvation = -4164.018569 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.72371 -39.32896 -38.46531 -36.13385 -35.74648 -33.92957 -33.60747 -32.04879 -31.53047 -30.64590 -29.51803 -26.88878 -25.38606 -25.20387 -23.92158 -23.83272 -22.32972 -20.65376 -20.37223 -19.83091 -18.96278 -17.30709 -16.87339 -16.70491 -16.52289 -16.17756 -15.81154 -15.49386 -15.26053 -14.96068 -14.74517 -14.44632 -14.05178 -13.97114 -13.76636 -13.32670 -13.29843 -13.02547 -12.85714 -12.64556 -12.46383 -12.45940 -12.14925 -11.99544 -11.81540 -11.57320 -11.37085 -11.17760 -11.12715 -10.91505 -10.64140 -10.60961 -10.53039 -10.29647 -9.93297 -9.87574 -9.50456 -9.38979 -9.13143 -8.72709 -8.39068 -8.26455 -6.67468 -5.85827 -3.24041 2.67365 3.00837 3.23533 3.34929 3.52407 3.54908 3.58866 3.79094 4.27726 4.44853 4.56475 4.61449 4.62025 4.75367 4.78487 4.87292 5.00407 5.02182 5.07475 5.17935 5.30843 5.36746 5.41923 5.47138 5.51890 5.56478 5.60883 5.67561 5.75486 5.82844 5.86899 5.99019 5.99249 6.04015 6.12061 6.18569 6.37495 6.39383 6.49164 6.79347 6.81304 6.89860 6.99402 7.08718 7.61745 8.03801 8.12422 8.28781 8.48857 8.88172 9.03324 9.81536 10.27198 11.30232 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019452 B = 0.003793 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.122780 B = 7379.692942 C = 7734.502963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.032 3.968 3 Si 0.876 3.124 4 H -0.289 1.289 5 H -0.305 1.305 6 H -0.273 1.273 7 C -0.239 4.239 8 H 0.080 0.920 9 N -0.600 5.600 10 C 0.117 3.883 11 C 0.092 3.908 12 N -0.723 5.723 13 C 0.514 3.486 14 O -0.507 6.507 15 C -0.159 4.159 16 C 0.107 3.893 17 N -0.611 5.611 18 C 0.519 3.481 19 O -0.530 6.530 20 C -0.143 4.143 21 H 0.101 0.899 22 C -0.102 4.102 23 C -0.156 4.156 24 C 0.057 3.943 25 O -0.377 6.377 26 C 0.065 3.935 27 C 0.094 3.906 28 C 0.147 3.853 29 H 0.260 0.740 30 H 0.053 0.947 31 H 0.042 0.958 32 H 0.098 0.902 33 H 0.053 0.947 34 H 0.389 0.611 35 H 0.103 0.897 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.094 0.906 44 H 0.051 0.949 45 H 0.057 0.943 46 H 0.107 0.893 47 H 0.114 0.886 48 H 0.054 0.946 49 H 0.028 0.972 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.048 -15.415 -6.058 23.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.167 4.167 3 Si 0.708 3.292 4 H -0.218 1.218 5 H -0.233 1.233 6 H -0.198 1.198 7 C -0.368 4.368 8 H 0.097 0.903 9 N -0.325 5.325 10 C -0.010 4.010 11 C -0.034 4.034 12 N -0.375 5.375 13 C 0.299 3.701 14 O -0.380 6.380 15 C -0.201 4.201 16 C -0.017 4.017 17 N -0.345 5.345 18 C 0.306 3.694 19 O -0.406 6.406 20 C -0.165 4.165 21 H 0.119 0.881 22 C -0.140 4.140 23 C -0.193 4.193 24 C -0.020 4.020 25 O -0.295 6.295 26 C -0.011 4.011 27 C -0.027 4.027 28 C 0.021 3.979 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.116 0.884 33 H 0.071 0.929 34 H 0.221 0.779 35 H 0.122 0.878 36 H 0.092 0.908 37 H 0.113 0.887 38 H 0.108 0.892 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.095 0.905 43 H 0.112 0.888 44 H 0.070 0.930 45 H 0.076 0.924 46 H 0.124 0.876 47 H 0.132 0.868 48 H 0.073 0.927 49 H 0.046 0.954 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 16.213 -14.915 -5.542 22.716 hybrid contribution 1.014 1.323 -0.078 1.669 sum 17.227 -13.591 -5.620 22.651 Atomic orbital electron populations 1.69893 1.05826 1.26240 1.52281 1.25380 0.95003 0.97348 0.98994 0.86940 0.80515 0.85194 0.76573 1.21752 1.23303 1.19811 1.18534 0.85617 0.93933 1.38676 0.90301 1.44687 1.07735 1.48307 1.31773 1.21845 0.96586 0.94600 0.87950 1.22191 1.00979 0.82603 0.97660 1.46070 1.12080 1.07343 1.72038 1.20326 0.87203 0.85762 0.76840 1.90828 1.15473 1.85920 1.45797 1.22212 1.02133 0.96552 0.99217 1.22028 0.99986 0.91781 0.87877 1.48910 1.06416 1.33418 1.45735 1.20202 0.81855 0.86062 0.81241 1.90720 1.71488 1.39157 1.39267 1.22025 0.96780 0.95305 1.02394 0.88091 1.21397 0.91670 0.98413 1.02512 1.22220 1.00348 0.95365 1.01401 1.22637 0.82128 0.97582 0.99644 1.87961 1.16854 1.46692 1.78036 1.22747 0.95385 0.85679 0.97334 1.22779 0.95245 0.88366 0.96358 1.21359 0.90886 0.88920 0.96734 0.93025 0.92912 0.93963 0.88389 0.92901 0.77865 0.87847 0.90751 0.88703 0.89190 0.90801 0.90755 0.90958 0.90522 0.88767 0.93023 0.92433 0.87588 0.86757 0.92745 0.95370 0.92522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.91 13.97 55.49 0.78 -27.14 16 2 C 0.03 0.94 5.36 -17.43 -0.09 0.85 16 3 Si 0.88 22.63 25.00 -169.99 -4.25 18.38 16 4 H -0.29 -7.19 6.69 56.52 0.38 -6.81 16 5 H -0.30 -8.06 7.11 56.52 0.40 -7.66 16 6 H -0.27 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.24 -6.63 9.31 -15.06 -0.14 -6.77 16 8 H 0.08 2.40 6.75 -52.49 -0.35 2.04 16 9 N -0.60 -14.08 1.91 -171.20 -0.33 -14.40 16 10 C 0.12 2.47 5.14 -3.35 -0.02 2.45 16 11 C 0.09 1.69 6.58 -3.70 -0.02 1.67 16 12 N -0.72 -11.15 4.71 -59.68 -0.28 -11.43 16 13 C 0.51 8.43 4.78 -10.66 -0.05 8.37 16 14 O -0.51 -11.03 15.25 5.55 0.08 -10.94 16 15 C -0.16 -1.77 6.17 -27.88 -0.17 -1.94 16 16 C 0.11 1.18 5.26 -3.35 -0.02 1.16 16 17 N -0.61 -8.57 2.44 -171.64 -0.42 -8.99 16 18 C 0.52 7.14 6.44 -10.98 -0.07 7.07 16 19 O -0.53 -9.29 14.06 5.56 0.08 -9.21 16 20 C -0.14 -1.42 1.93 -91.63 -0.18 -1.60 16 21 H 0.10 0.88 6.98 -51.93 -0.36 0.51 16 22 C -0.10 -0.97 4.68 -26.55 -0.12 -1.10 16 23 C -0.16 -1.11 6.14 -26.59 -0.16 -1.27 16 24 C 0.06 0.42 6.84 37.20 0.25 0.67 16 25 O -0.38 -3.55 10.76 -35.23 -0.38 -3.93 16 26 C 0.07 0.60 5.83 37.21 0.22 0.82 16 27 C 0.09 1.76 4.92 -3.34 -0.02 1.74 16 28 C 0.15 3.07 4.51 -3.35 -0.02 3.05 16 29 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 30 H 0.05 1.24 3.07 -51.93 -0.16 1.08 16 31 H 0.04 0.81 7.76 -51.93 -0.40 0.41 16 32 H 0.10 2.22 6.98 -51.93 -0.36 1.86 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.39 4.80 8.71 -40.82 -0.36 4.45 16 35 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.07 0.65 7.03 -51.93 -0.37 0.29 16 37 H 0.09 1.15 7.83 -51.93 -0.41 0.75 16 38 H 0.09 0.72 4.26 -51.93 -0.22 0.50 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.07 0.80 7.94 -51.93 -0.41 0.39 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.11 0.86 5.20 -51.93 -0.27 0.59 16 47 H 0.11 2.45 4.22 -51.93 -0.22 2.23 16 48 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 49 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 50 H 0.06 1.12 5.79 -51.93 -0.30 0.82 16 LS Contribution 365.14 15.07 5.50 5.50 Total: -1.00 -35.02 365.14 -7.41 -42.43 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -7.58 Total: 4.56 kcal Atomic # 6 Polarization: 15.79 SS G_CDS: -0.61 Total: 15.18 kcal Atomic # 7 Polarization: -61.72 SS G_CDS: -0.25 Total: -61.97 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: -0.22 Total: -24.08 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -4.25 Total: 18.38 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.02 -7.41 -42.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070945877.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.416 kcal (2) G-P(sol) polarization free energy of solvation -35.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds