Wall clock time and date at job start Sat Apr 11 2020 05:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99846 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99598 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99591 * 3 2 1 7 7 C 1.38811 * 120.00460 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00021 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99586 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99727 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.52456 * 34.87622 * 10 9 7 12 12 C 1.53173 * 109.52375 * 274.68881 * 10 9 7 13 13 C 1.53177 * 109.03605 * 297.07331 * 12 10 9 14 14 C 1.53097 * 109.16319 * 303.02221 * 13 12 10 15 15 O 1.42899 * 109.41740 * 57.60709 * 14 13 12 16 16 C 1.42908 * 114.09473 * 298.84522 * 15 14 13 17 17 H 1.09000 * 109.48563 * 301.16143 * 16 15 14 18 18 C 1.53001 * 109.47543 * 181.13932 * 16 15 14 19 19 C 1.53049 * 109.45653 * 180.08305 * 18 16 15 20 20 C 1.53191 * 109.31144 * 178.60173 * 19 18 16 21 21 N 1.46924 * 108.76820 * 54.65182 * 20 19 18 22 22 C 1.34781 * 120.63048 * 126.35877 * 21 20 19 23 23 O 1.21276 * 119.99777 * 180.02562 * 22 21 20 24 24 C 1.50701 * 119.99722 * 0.02613 * 22 21 20 25 25 C 1.50704 * 109.46864 * 179.97438 * 24 22 21 26 26 N 1.34774 * 119.99742 * 180.02562 * 25 24 22 27 27 O 1.21282 * 119.99973 * 0.02562 * 25 24 22 28 28 C 1.46927 * 118.74097 * 306.38921 * 21 20 19 29 29 C 1.53041 * 109.46356 * 60.02818 * 18 16 15 30 30 H 0.97001 * 119.99952 * 179.97438 * 1 2 3 31 31 H 0.96998 * 120.00177 * 0.02562 * 9 7 2 32 32 H 1.08998 * 109.54752 * 56.94078 * 12 10 9 33 33 H 1.09003 * 109.54447 * 177.21334 * 12 10 9 34 34 H 1.08998 * 109.52461 * 183.11626 * 13 12 10 35 35 H 1.09000 * 109.57261 * 62.95593 * 13 12 10 36 36 H 1.08994 * 109.47960 * 297.62094 * 14 13 12 37 37 H 1.09002 * 109.47686 * 177.58913 * 14 13 12 38 38 H 1.09005 * 109.46477 * 300.04953 * 18 16 15 39 39 H 1.09004 * 109.49346 * 298.56159 * 19 18 16 40 40 H 1.08995 * 109.49816 * 58.65967 * 19 18 16 41 41 H 1.09004 * 109.59640 * 294.86690 * 20 19 18 42 42 H 1.08994 * 109.70426 * 174.50533 * 20 19 18 43 43 H 1.08998 * 109.47082 * 299.99610 * 24 22 21 44 44 H 1.09003 * 109.47074 * 60.00319 * 24 22 21 45 45 H 0.96993 * 120.00145 * 359.97438 * 26 25 24 46 46 H 0.97001 * 119.99661 * 180.02562 * 26 25 24 47 47 H 1.09003 * 109.58228 * 293.81536 * 28 21 20 48 48 H 1.08997 * 109.70490 * 173.46384 * 28 21 20 49 49 H 1.08996 * 109.49805 * 301.33607 * 29 18 16 50 50 H 1.09002 * 109.49454 * 61.39717 * 29 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1040 1.6964 -1.2125 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9702 -3.5508 0.5880 12 6 2.4164 -4.0410 -1.4383 13 6 1.1254 -4.2620 -2.2325 14 6 0.2847 -5.3356 -1.5364 15 8 0.0131 -4.9297 -0.1935 16 6 1.1816 -4.7537 0.6103 17 1 1.7416 -5.6881 0.6474 18 6 0.7698 -4.3491 2.0272 19 6 2.0214 -4.1586 2.8871 20 6 1.6069 -3.7198 4.2951 21 7 0.6492 -4.6962 4.8318 22 6 0.8631 -5.2827 6.0263 23 8 0.0652 -6.0875 6.4581 24 6 2.0937 -4.9384 6.8251 25 6 2.0941 -5.7246 8.1109 26 7 3.1049 -5.5776 8.9902 27 8 1.1849 -6.4894 8.3543 28 6 -0.5458 -5.0217 4.0413 29 6 -0.1072 -5.4456 2.6361 30 1 -0.4850 -0.8401 -0.0004 31 1 0.3556 -2.3881 -0.0002 32 1 2.9938 -3.2385 -1.8971 33 1 3.0040 -4.9591 -1.4350 34 1 1.3707 -4.5897 -3.2427 35 1 0.5610 -3.3306 -2.2786 36 1 0.8329 -6.2776 -1.5277 37 1 -0.6547 -5.4665 -2.0736 38 1 0.2094 -3.4148 1.9898 39 1 2.5692 -5.0992 2.9455 40 1 2.6569 -3.3941 2.4403 41 1 1.1388 -2.7365 4.2485 42 1 2.4846 -3.6764 4.9398 43 1 2.9836 -5.1868 6.2467 44 1 2.0933 -3.8722 7.0516 45 1 3.8322 -4.9662 8.7953 46 1 3.1053 -6.0839 9.8176 47 1 -1.1895 -4.1446 3.9742 48 1 -1.0895 -5.8383 4.5164 49 1 -0.9868 -5.5972 2.0107 50 1 0.4607 -6.3740 2.6964 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075407213.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:22 Heat of formation + Delta-G solvation = -111.879086 kcal Electronic energy + Delta-G solvation = -31434.593862 eV Core-core repulsion = 27268.665730 eV Total energy + Delta-G solvation = -4165.928132 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.58875 -39.64454 -38.76742 -36.94306 -34.86441 -33.95260 -33.49198 -32.53824 -31.66510 -30.44373 -29.92761 -28.06708 -25.75378 -24.13003 -23.33189 -22.82156 -22.50347 -21.35601 -20.17581 -19.11749 -18.88337 -17.68574 -17.47257 -17.31662 -16.13951 -16.06831 -15.87629 -15.66585 -15.57028 -14.88192 -14.62174 -14.31658 -13.86505 -13.81142 -13.68267 -13.63883 -13.45118 -13.39848 -13.05167 -12.98000 -12.47145 -12.28183 -12.15333 -11.97525 -11.61907 -11.19428 -11.13873 -10.90549 -10.72628 -10.63564 -10.46873 -10.27971 -10.26193 -10.11519 -10.04373 -9.89199 -9.69822 -9.46970 -9.30323 -8.95783 -8.79666 -8.53129 -7.01043 -6.09245 -3.08991 2.43652 2.69837 2.78444 3.43647 3.47733 3.50884 3.68942 4.04104 4.28041 4.64794 4.65486 4.81533 4.87278 4.94827 5.01469 5.10344 5.20669 5.31572 5.38017 5.39694 5.42367 5.46414 5.49781 5.59401 5.65932 5.74239 5.81109 5.85675 5.91554 5.97885 6.01753 6.09545 6.10384 6.23401 6.24694 6.33887 6.45625 6.53563 6.57032 6.67293 6.71336 6.80319 6.89831 7.04783 7.42602 7.63663 7.79554 8.05863 8.27189 8.76698 9.23890 10.10622 10.27798 11.38714 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011393 B = 0.003329 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2457.086963 B = 8410.088148 C = 9945.713301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.042 4.042 3 Si 1.075 2.925 4 H -0.286 1.286 5 H -0.298 1.298 6 H -0.296 1.296 7 C -0.329 4.329 8 H 0.061 0.939 9 N -0.722 5.722 10 C 0.155 3.845 11 H 0.056 0.944 12 C -0.140 4.140 13 C -0.147 4.147 14 C 0.067 3.933 15 O -0.375 6.375 16 C 0.092 3.908 17 H 0.047 0.953 18 C -0.070 4.070 19 C -0.125 4.125 20 C 0.108 3.892 21 N -0.611 5.611 22 C 0.514 3.486 23 O -0.505 6.505 24 C -0.168 4.168 25 C 0.515 3.485 26 N -0.862 5.862 27 O -0.498 6.498 28 C 0.114 3.886 29 C -0.124 4.124 30 H 0.257 0.743 31 H 0.372 0.628 32 H 0.065 0.935 33 H 0.042 0.958 34 H 0.055 0.945 35 H 0.079 0.921 36 H 0.039 0.961 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.059 0.941 40 H 0.091 0.909 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.122 0.878 44 H 0.122 0.878 45 H 0.399 0.601 46 H 0.402 0.598 47 H 0.069 0.931 48 H 0.089 0.911 49 H 0.082 0.918 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.406 -10.332 9.051 16.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.240 4.240 3 Si 0.907 3.093 4 H -0.212 1.212 5 H -0.225 1.225 6 H -0.224 1.224 7 C -0.460 4.460 8 H 0.079 0.921 9 N -0.365 5.365 10 C 0.044 3.956 11 H 0.074 0.926 12 C -0.181 4.181 13 C -0.185 4.185 14 C -0.010 4.010 15 O -0.294 6.294 16 C 0.034 3.966 17 H 0.065 0.935 18 C -0.089 4.089 19 C -0.163 4.163 20 C -0.015 4.015 21 N -0.346 5.346 22 C 0.299 3.701 23 O -0.378 6.378 24 C -0.211 4.211 25 C 0.298 3.702 26 N -0.427 5.427 27 O -0.370 6.370 28 C -0.008 4.008 29 C -0.162 4.162 30 H 0.068 0.932 31 H 0.207 0.793 32 H 0.084 0.916 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.057 0.943 37 H 0.103 0.897 38 H 0.110 0.890 39 H 0.078 0.922 40 H 0.110 0.890 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.140 0.860 44 H 0.140 0.860 45 H 0.227 0.773 46 H 0.232 0.768 47 H 0.087 0.913 48 H 0.107 0.893 49 H 0.100 0.900 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.128 -9.513 9.364 15.132 hybrid contribution 0.932 -1.401 -0.276 1.705 sum 8.059 -10.914 9.088 16.329 Atomic orbital electron populations 1.70860 1.06015 1.28628 1.53260 1.25628 0.97019 1.00676 1.00700 0.83301 0.74240 0.76057 0.75711 1.21171 1.22518 1.22403 1.19979 0.91728 0.85809 1.48466 0.92122 1.42287 1.04958 0.99880 1.89384 1.20761 0.94568 0.87100 0.93187 0.92648 1.22242 0.96549 0.99732 0.99561 1.22021 0.97899 1.00475 0.98078 1.22468 0.99575 0.95563 0.83384 1.87868 1.30823 1.88991 1.21690 1.22399 0.86945 0.96702 0.90581 0.93499 1.20976 0.96408 0.99889 0.91625 1.21918 0.98023 1.02095 0.94290 1.21799 0.92202 0.92352 0.95104 1.48166 1.24303 1.43246 1.18901 1.19881 0.87244 0.81582 0.81388 1.90832 1.45984 1.32674 1.68329 1.21648 1.00318 1.03239 0.95872 1.20058 0.82133 0.82918 0.85113 1.43870 1.26168 1.48929 1.23780 1.90909 1.34398 1.35668 1.75976 1.21608 0.86615 1.01551 0.91041 1.21918 1.00904 0.98316 0.95105 0.93170 0.79342 0.91640 0.93957 0.92597 0.90245 0.94321 0.89737 0.88950 0.92227 0.89048 0.90408 0.90106 0.86027 0.85972 0.77257 0.76758 0.91312 0.89263 0.89990 0.92299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -27.89 13.70 55.49 0.76 -27.13 16 2 C -0.04 -1.15 5.50 -17.43 -0.10 -1.24 16 3 Si 1.08 24.73 29.92 -169.99 -5.09 19.65 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.30 -6.63 7.11 56.52 0.40 -6.22 16 6 H -0.30 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.33 -8.46 9.93 -15.06 -0.15 -8.61 16 8 H 0.06 1.55 7.83 -52.49 -0.41 1.14 16 9 N -0.72 -16.32 3.77 -53.29 -0.20 -16.52 16 10 C 0.15 2.81 2.18 -67.80 -0.15 2.66 16 11 H 0.06 1.01 6.48 -51.93 -0.34 0.67 16 12 C -0.14 -2.40 5.70 -26.55 -0.15 -2.56 16 13 C -0.15 -2.41 5.96 -26.59 -0.16 -2.57 16 14 C 0.07 0.99 6.84 37.21 0.25 1.25 16 15 O -0.37 -6.36 9.32 -35.23 -0.33 -6.69 16 16 C 0.09 1.46 1.91 -26.68 -0.05 1.41 16 17 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 18 C -0.07 -1.05 1.77 -90.57 -0.16 -1.21 16 19 C -0.13 -1.60 5.04 -26.61 -0.13 -1.73 16 20 C 0.11 1.21 6.34 -3.71 -0.02 1.19 16 21 N -0.61 -7.82 2.97 -172.77 -0.51 -8.33 16 22 C 0.51 7.07 7.69 -10.98 -0.08 6.99 16 23 O -0.50 -9.34 13.60 -18.95 -0.26 -9.60 16 24 C -0.17 -1.49 4.53 -29.03 -0.13 -1.62 16 25 C 0.52 5.64 8.09 -10.98 -0.09 5.55 16 26 N -0.86 -5.17 8.87 31.22 0.28 -4.90 16 27 O -0.50 -8.41 15.02 -18.96 -0.28 -8.69 16 28 C 0.11 1.56 6.43 -3.71 -0.02 1.54 16 29 C -0.12 -1.70 5.23 -26.61 -0.14 -1.84 16 30 H 0.26 7.58 6.77 -40.82 -0.28 7.30 16 31 H 0.37 9.14 5.97 -40.82 -0.24 8.90 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.08 1.57 7.76 -51.93 -0.40 1.17 16 36 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.09 1.69 7.30 -51.93 -0.38 1.31 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.09 1.31 6.42 -51.93 -0.33 0.98 16 41 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.08 0.64 5.93 -51.93 -0.31 0.33 16 43 H 0.12 0.72 7.69 -51.93 -0.40 0.32 16 44 H 0.12 0.74 7.94 -51.93 -0.41 0.33 16 45 H 0.40 1.01 8.83 -40.82 -0.36 0.65 16 46 H 0.40 2.16 8.93 -40.82 -0.36 1.80 16 47 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 48 H 0.09 1.31 7.01 -51.93 -0.36 0.94 16 49 H 0.08 1.16 7.64 -51.93 -0.40 0.77 16 50 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 385.59 15.07 5.81 5.81 Total: -1.00 -35.96 385.59 -9.12 -45.08 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: -8.01 Total: 12.10 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -1.29 Total: -0.79 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: 0.32 Total: -56.88 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -0.87 Total: -24.98 kcal Atomic # 14 Polarization: 24.73 SS G_CDS: -5.09 Total: 19.65 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.96 -9.12 -45.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075407213.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.795 kcal (2) G-P(sol) polarization free energy of solvation -35.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds