Wall clock time and date at job start Sat Apr 11 2020 05:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 119.99936 * 2 1 4 4 H 1.48503 * 109.46825 * 239.99649 * 3 2 1 5 5 H 1.48495 * 109.47513 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46837 * 120.00016 * 3 2 1 7 7 C 1.38808 * 119.99571 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99897 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00596 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00325 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.63372 * 35.40677 * 10 9 7 12 12 C 1.53493 * 109.63512 * 274.99511 * 10 9 7 13 13 C 1.52478 * 109.14823 * 126.09386 * 12 10 9 14 14 C 1.53113 * 109.67289 * 43.93114 * 13 12 10 15 15 C 1.53436 * 109.37472 * 77.01347 * 14 13 12 16 16 C 1.53397 * 108.50566 * 287.68227 * 15 14 13 17 17 N 1.46059 * 110.12692 * 316.30263 * 16 15 14 18 18 C 1.34780 * 120.18343 * 293.04085 * 17 16 15 19 19 O 1.21286 * 120.00208 * 355.44249 * 18 17 16 20 20 C 1.50694 * 119.99881 * 175.43512 * 18 17 16 21 21 H 1.09001 * 109.87352 * 309.30451 * 20 18 17 22 22 C 1.54107 * 109.87772 * 70.31010 * 20 18 17 23 23 C 1.54811 * 104.18711 * 121.45448 * 22 20 18 24 24 C 1.54998 * 102.09357 * 20.88145 * 23 22 20 25 25 H 1.09004 * 110.61795 * 81.63234 * 24 23 22 26 26 C 1.50696 * 110.61874 * 204.47692 * 24 23 22 27 27 N 1.34780 * 120.00107 * 294.99745 * 26 24 23 28 28 O 1.21279 * 120.00005 * 115.00157 * 26 24 23 29 29 O 1.43740 * 109.88122 * 188.14188 * 20 18 17 30 30 C 1.47127 * 119.62410 * 113.06279 * 17 16 15 31 31 H 0.97003 * 120.00025 * 0.02562 * 1 2 3 32 32 H 0.97004 * 119.99559 * 359.97438 * 9 7 2 33 33 H 1.08998 * 109.52394 * 6.19299 * 12 10 9 34 34 H 1.08994 * 109.52630 * 245.99811 * 12 10 9 35 35 H 1.09002 * 109.43951 * 283.86911 * 13 12 10 36 36 H 1.09003 * 109.43555 * 163.98984 * 13 12 10 37 37 H 1.08997 * 109.49347 * 196.99461 * 14 13 12 38 38 H 1.09000 * 109.48909 * 317.03900 * 14 13 12 39 39 H 1.09000 * 109.63043 * 47.36412 * 15 14 13 40 40 H 1.09001 * 109.62948 * 167.95684 * 15 14 13 41 41 H 1.09003 * 109.35358 * 196.10217 * 16 15 14 42 42 H 1.09006 * 109.26933 * 76.44076 * 16 15 14 43 43 H 1.08994 * 110.48669 * 240.12971 * 22 20 18 44 44 H 1.08999 * 110.48763 * 2.64688 * 22 20 18 45 45 H 1.08995 * 110.90575 * 139.08052 * 23 22 20 46 46 H 1.09004 * 110.90672 * 262.65035 * 23 22 20 47 47 H 0.96997 * 119.99254 * 0.02562 * 27 26 24 48 48 H 0.97002 * 119.99962 * 180.02562 * 27 26 24 49 49 H 1.09000 * 109.84586 * 168.35421 * 30 17 16 50 50 H 1.09000 * 109.90631 * 47.39977 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0017 11 1 2.9652 -3.5554 0.5971 12 6 2.4260 -4.0412 -1.4381 13 6 3.9279 -4.2911 -1.5207 14 6 4.3787 -5.1240 -0.3176 15 6 3.9856 -6.5907 -0.5378 16 6 2.4649 -6.7161 -0.3796 17 7 2.0158 -5.9534 0.7822 18 6 2.3733 -6.3368 2.0239 19 8 2.9998 -7.3627 2.1851 20 6 1.9947 -5.4906 3.2120 21 1 2.2878 -4.4553 3.0380 22 6 0.4743 -5.5718 3.4500 23 6 0.3447 -6.1154 4.8937 24 6 1.7314 -5.7727 5.4954 25 1 1.7624 -4.7327 5.8204 26 6 2.0549 -6.6952 6.6423 27 7 1.3091 -6.6625 7.7645 28 8 2.9863 -7.4670 6.5555 29 8 2.6397 -5.9920 4.3947 30 6 1.1707 -4.7646 0.5894 31 1 -0.4850 0.8401 -0.0004 32 1 0.3555 -2.3880 0.0005 33 1 2.1541 -3.2294 -2.1127 34 1 1.8898 -4.9468 -1.7217 35 1 4.4550 -3.3370 -1.5194 36 1 4.1559 -4.8296 -2.4405 37 1 5.4607 -5.0498 -0.2089 38 1 3.8961 -4.7497 0.5852 39 1 4.2759 -6.9009 -1.5415 40 1 4.4839 -7.2182 0.2011 41 1 2.2009 -7.7654 -0.2473 42 1 1.9772 -6.3310 -1.2752 43 1 0.0227 -4.5828 3.3727 44 1 0.0130 -6.2574 2.7392 45 1 -0.4511 -5.6015 5.4328 46 1 0.1770 -7.1925 4.8902 47 1 0.5639 -6.0455 7.8336 48 1 1.5176 -7.2561 8.5028 49 1 0.7616 -4.4422 1.5469 50 1 0.3591 -4.9943 -0.1010 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088381719.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:38 Heat of formation + Delta-G solvation = -85.538840 kcal Electronic energy + Delta-G solvation = -31939.584925 eV Core-core repulsion = 27774.798991 eV Total energy + Delta-G solvation = -4164.785934 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.96929 -39.91328 -38.44574 -37.27004 -34.62274 -34.20624 -34.02305 -32.27679 -32.04231 -30.41311 -29.39009 -27.24000 -26.72104 -24.79918 -23.76061 -22.65308 -21.83127 -21.29980 -20.76019 -19.58246 -18.81803 -17.89271 -17.56820 -17.06482 -16.75674 -16.38046 -16.06071 -15.67789 -15.09444 -14.94858 -14.71025 -14.48607 -14.36932 -13.94854 -13.75848 -13.61952 -13.55949 -13.24283 -12.89499 -12.44128 -12.40311 -12.07399 -11.95217 -11.86565 -11.70715 -11.45323 -11.18980 -11.10898 -10.94308 -10.90480 -10.59481 -10.41992 -10.33354 -10.19391 -10.09068 -9.96395 -9.92152 -9.81675 -9.62841 -9.21176 -8.92223 -8.41499 -7.04443 -5.85273 -3.14420 2.37892 2.59914 2.82847 3.17309 3.38913 3.44174 3.44995 3.88276 4.15360 4.39308 4.53203 4.57144 4.63177 4.81652 4.93830 4.99821 5.14371 5.20897 5.23007 5.27640 5.37724 5.42572 5.44305 5.47724 5.54880 5.63442 5.72739 5.74577 5.79443 5.82196 5.88716 6.00497 6.02820 6.22409 6.31606 6.37543 6.38476 6.50794 6.56373 6.60530 6.69594 6.78326 6.90119 7.03834 7.09477 7.52331 7.65095 8.02598 8.32902 8.35428 9.44803 9.99370 10.34363 11.36921 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010020 B = 0.003906 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2793.862909 B = 7166.312210 C = 9009.130613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.010 4.010 3 Si 0.904 3.096 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.237 4.237 8 H 0.069 0.931 9 N -0.722 5.722 10 C 0.155 3.845 11 H 0.065 0.935 12 C -0.149 4.149 13 C -0.112 4.112 14 C -0.130 4.130 15 C -0.134 4.134 16 C 0.113 3.887 17 N -0.600 5.600 18 C 0.517 3.483 19 O -0.519 6.519 20 C 0.056 3.944 21 H 0.105 0.895 22 C -0.145 4.145 23 C -0.141 4.141 24 C 0.054 3.946 25 H 0.103 0.897 26 C 0.523 3.477 27 N -0.854 5.854 28 O -0.515 6.515 29 O -0.318 6.318 30 C 0.090 3.910 31 H 0.256 0.744 32 H 0.383 0.617 33 H 0.072 0.928 34 H 0.053 0.947 35 H 0.058 0.942 36 H 0.050 0.950 37 H 0.051 0.949 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.093 0.907 43 H 0.099 0.901 44 H 0.086 0.914 45 H 0.094 0.906 46 H 0.083 0.917 47 H 0.402 0.598 48 H 0.404 0.596 49 H 0.089 0.911 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.659 -11.992 8.076 14.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.206 4.206 3 Si 0.735 3.265 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.368 4.368 8 H 0.087 0.913 9 N -0.364 5.364 10 C 0.045 3.955 11 H 0.082 0.918 12 C -0.189 4.189 13 C -0.150 4.150 14 C -0.167 4.167 15 C -0.172 4.172 16 C -0.009 4.009 17 N -0.335 5.335 18 C 0.303 3.697 19 O -0.394 6.394 20 C -0.006 4.006 21 H 0.123 0.877 22 C -0.183 4.183 23 C -0.179 4.179 24 C -0.008 4.008 25 H 0.121 0.879 26 C 0.307 3.693 27 N -0.420 5.420 28 O -0.389 6.389 29 O -0.234 6.234 30 C -0.033 4.033 31 H 0.065 0.935 32 H 0.216 0.784 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.111 0.889 43 H 0.118 0.882 44 H 0.105 0.895 45 H 0.112 0.888 46 H 0.102 0.898 47 H 0.230 0.770 48 H 0.236 0.764 49 H 0.107 0.893 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.329 -12.942 7.927 15.235 hybrid contribution -0.326 1.339 0.143 1.385 sum -1.655 -11.603 8.070 14.230 Atomic orbital electron populations 1.69636 1.05045 1.25818 1.57603 1.24696 0.95466 0.97562 1.02864 0.86320 0.78593 0.83659 0.77935 1.21282 1.21716 1.21249 1.19136 0.90944 0.83841 1.42857 0.91266 1.42373 1.05647 0.99548 1.88820 1.21163 0.94717 0.85742 0.93927 0.91779 1.22721 0.94968 1.00704 1.00486 1.21478 0.97202 0.99354 0.96992 1.21943 1.00125 0.94562 1.00077 1.22076 0.95842 0.97624 1.01682 1.21649 0.95523 0.95573 0.88168 1.47876 1.51466 1.28895 1.05246 1.20261 0.79783 0.85906 0.83711 1.90707 1.39130 1.24450 1.85144 1.22794 0.93205 0.98387 0.86172 0.87702 1.23003 0.94374 1.03855 0.97070 1.23114 0.95871 1.03017 0.95865 1.23042 0.90221 0.98914 0.88585 0.87924 1.20190 0.82199 0.83590 0.83370 1.43722 1.35522 1.44534 1.18242 1.90810 1.28663 1.38647 1.80747 1.89123 1.37716 1.82913 1.13690 1.22597 0.93290 0.84777 1.02638 0.93456 0.78383 0.90916 0.92838 0.92324 0.93110 0.93007 0.90360 0.91378 0.91293 0.91880 0.88913 0.88216 0.89509 0.88775 0.89810 0.77004 0.76413 0.89309 0.90481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.15 13.06 55.49 0.72 -25.43 16 2 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 3 Si 0.90 21.35 29.55 -169.99 -5.02 16.33 16 4 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.24 -6.03 9.94 -15.06 -0.15 -6.18 16 8 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 9 N -0.72 -15.92 4.99 -52.87 -0.26 -16.18 16 10 C 0.16 2.69 2.40 -67.35 -0.16 2.53 16 11 H 0.06 1.21 5.40 -51.93 -0.28 0.93 16 12 C -0.15 -2.40 5.26 -26.74 -0.14 -2.54 16 13 C -0.11 -1.68 5.67 -26.94 -0.15 -1.83 16 14 C -0.13 -1.92 5.43 -26.45 -0.14 -2.06 16 15 C -0.13 -1.82 5.55 -26.30 -0.15 -1.96 16 16 C 0.11 1.48 5.12 -4.07 -0.02 1.46 16 17 N -0.60 -8.42 1.72 -172.90 -0.30 -8.72 16 18 C 0.52 8.30 5.99 -10.99 -0.07 8.23 16 19 O -0.52 -10.27 15.58 -13.90 -0.22 -10.49 16 20 C 0.06 0.78 2.95 -27.31 -0.08 0.70 16 21 H 0.11 1.47 7.75 -51.93 -0.40 1.07 16 22 C -0.15 -1.50 4.95 -25.20 -0.12 -1.62 16 23 C -0.14 -1.22 6.57 -24.72 -0.16 -1.38 16 24 C 0.05 0.60 3.76 -26.83 -0.10 0.50 16 25 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 26 C 0.52 6.28 7.48 -10.99 -0.08 6.20 16 27 N -0.85 -5.55 8.86 31.22 0.28 -5.27 16 28 O -0.52 -9.11 17.40 -13.51 -0.24 -9.34 16 29 O -0.32 -5.13 10.03 -64.26 -0.64 -5.77 16 30 C 0.09 1.26 5.00 -3.38 -0.02 1.25 16 31 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.38 8.89 7.80 -40.82 -0.32 8.57 16 33 H 0.07 1.37 7.88 -51.93 -0.41 0.97 16 34 H 0.05 0.75 4.49 -51.93 -0.23 0.52 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.05 0.68 7.85 -51.93 -0.41 0.27 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.08 1.29 3.69 -51.93 -0.19 1.10 16 39 H 0.07 0.80 7.89 -51.93 -0.41 0.39 16 40 H 0.07 1.06 7.37 -51.93 -0.38 0.68 16 41 H 0.06 0.83 8.07 -51.93 -0.42 0.41 16 42 H 0.09 1.10 5.06 -51.93 -0.26 0.84 16 43 H 0.10 0.90 7.55 -51.93 -0.39 0.51 16 44 H 0.09 0.89 7.66 -51.93 -0.40 0.49 16 45 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.08 0.79 8.05 -51.93 -0.42 0.37 16 47 H 0.40 1.24 8.83 -40.82 -0.36 0.88 16 48 H 0.40 2.22 8.93 -40.82 -0.36 1.86 16 49 H 0.09 1.18 4.44 -51.93 -0.23 0.95 16 50 H 0.08 1.00 7.97 -51.93 -0.41 0.59 16 LS Contribution 379.49 15.07 5.72 5.72 Total: -1.00 -35.47 379.49 -9.14 -44.60 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: -7.53 Total: 11.64 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: -1.64 Total: 2.92 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: 0.44 Total: -55.60 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -1.10 Total: -25.60 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.47 -9.14 -44.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088381719.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.935 kcal (2) G-P(sol) polarization free energy of solvation -35.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds