Wall clock time and date at job start Sat Apr 11 2020 05:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 119.99936 * 2 1 4 4 H 1.48503 * 109.46825 * 239.99649 * 3 2 1 5 5 H 1.48495 * 109.47513 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46837 * 120.00016 * 3 2 1 7 7 C 1.38808 * 119.99571 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99897 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00596 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00325 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.63372 * 35.40677 * 10 9 7 12 12 C 1.53493 * 109.63512 * 274.99511 * 10 9 7 13 13 C 1.52478 * 109.14823 * 126.09386 * 12 10 9 14 14 C 1.53113 * 109.67289 * 43.93114 * 13 12 10 15 15 C 1.53436 * 109.37472 * 77.01347 * 14 13 12 16 16 C 1.53397 * 108.50566 * 287.68227 * 15 14 13 17 17 N 1.46059 * 110.12692 * 316.30263 * 16 15 14 18 18 C 1.34780 * 120.18343 * 293.04085 * 17 16 15 19 19 O 1.21286 * 120.00208 * 355.44249 * 18 17 16 20 20 C 1.50694 * 119.99881 * 175.43512 * 18 17 16 21 21 H 1.09001 * 109.87352 * 309.30451 * 20 18 17 22 22 C 1.54107 * 109.87772 * 70.31010 * 20 18 17 23 23 C 1.54811 * 104.18711 * 121.45448 * 22 20 18 24 24 C 1.54998 * 102.09357 * 20.88145 * 23 22 20 25 25 H 1.09004 * 110.61795 * 81.63234 * 24 23 22 26 26 C 1.50696 * 110.61874 * 204.47692 * 24 23 22 27 27 N 1.34780 * 120.00107 * 294.99745 * 26 24 23 28 28 O 1.21279 * 120.00005 * 115.00157 * 26 24 23 29 29 O 1.43740 * 109.88122 * 188.14188 * 20 18 17 30 30 C 1.47127 * 119.62410 * 113.06279 * 17 16 15 31 31 H 0.97003 * 120.00025 * 0.02562 * 1 2 3 32 32 H 0.97004 * 119.99559 * 359.97438 * 9 7 2 33 33 H 1.08998 * 109.52394 * 6.19299 * 12 10 9 34 34 H 1.08994 * 109.52630 * 245.99811 * 12 10 9 35 35 H 1.09002 * 109.43951 * 283.86911 * 13 12 10 36 36 H 1.09003 * 109.43555 * 163.98984 * 13 12 10 37 37 H 1.08997 * 109.49347 * 196.99461 * 14 13 12 38 38 H 1.09000 * 109.48909 * 317.03900 * 14 13 12 39 39 H 1.09000 * 109.63043 * 47.36412 * 15 14 13 40 40 H 1.09001 * 109.62948 * 167.95684 * 15 14 13 41 41 H 1.09003 * 109.35358 * 196.10217 * 16 15 14 42 42 H 1.09006 * 109.26933 * 76.44076 * 16 15 14 43 43 H 1.08994 * 110.48669 * 240.12971 * 22 20 18 44 44 H 1.08999 * 110.48763 * 2.64688 * 22 20 18 45 45 H 1.08995 * 110.90575 * 139.08052 * 23 22 20 46 46 H 1.09004 * 110.90672 * 262.65035 * 23 22 20 47 47 H 0.96997 * 119.99254 * 0.02562 * 27 26 24 48 48 H 0.97002 * 119.99962 * 180.02562 * 27 26 24 49 49 H 1.09000 * 109.84586 * 168.35421 * 30 17 16 50 50 H 1.09000 * 109.90631 * 47.39977 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0017 11 1 2.9652 -3.5554 0.5971 12 6 2.4260 -4.0412 -1.4381 13 6 3.9279 -4.2911 -1.5207 14 6 4.3787 -5.1240 -0.3176 15 6 3.9856 -6.5907 -0.5378 16 6 2.4649 -6.7161 -0.3796 17 7 2.0158 -5.9534 0.7822 18 6 2.3733 -6.3368 2.0239 19 8 2.9998 -7.3627 2.1851 20 6 1.9947 -5.4906 3.2120 21 1 2.2878 -4.4553 3.0380 22 6 0.4743 -5.5718 3.4500 23 6 0.3447 -6.1154 4.8937 24 6 1.7314 -5.7727 5.4954 25 1 1.7624 -4.7327 5.8204 26 6 2.0549 -6.6952 6.6423 27 7 1.3091 -6.6625 7.7645 28 8 2.9863 -7.4670 6.5555 29 8 2.6397 -5.9920 4.3947 30 6 1.1707 -4.7646 0.5894 31 1 -0.4850 0.8401 -0.0004 32 1 0.3555 -2.3880 0.0005 33 1 2.1541 -3.2294 -2.1127 34 1 1.8898 -4.9468 -1.7217 35 1 4.4550 -3.3370 -1.5194 36 1 4.1559 -4.8296 -2.4405 37 1 5.4607 -5.0498 -0.2089 38 1 3.8961 -4.7497 0.5852 39 1 4.2759 -6.9009 -1.5415 40 1 4.4839 -7.2182 0.2011 41 1 2.2009 -7.7654 -0.2473 42 1 1.9772 -6.3310 -1.2752 43 1 0.0227 -4.5828 3.3727 44 1 0.0130 -6.2574 2.7392 45 1 -0.4511 -5.6015 5.4328 46 1 0.1770 -7.1925 4.8902 47 1 0.5639 -6.0455 7.8336 48 1 1.5176 -7.2561 8.5028 49 1 0.7616 -4.4422 1.5469 50 1 0.3591 -4.9943 -0.1010 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088381719.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:37 Heat of formation + Delta-G solvation = -111.317202 kcal Electronic energy + Delta-G solvation = -31940.702758 eV Core-core repulsion = 27774.798991 eV Total energy + Delta-G solvation = -4165.903767 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.07743 -40.96190 -39.52988 -38.55637 -36.22723 -35.42106 -34.88495 -33.80087 -33.11064 -31.57163 -30.79685 -28.55447 -27.92615 -25.97835 -25.32563 -23.88492 -22.82475 -22.52739 -21.61663 -20.87553 -20.00954 -19.26263 -18.60518 -18.25524 -17.80701 -17.51605 -17.17159 -16.96508 -16.42970 -16.16431 -15.87148 -15.65087 -15.57119 -15.24776 -15.13555 -14.85901 -14.60198 -14.53977 -14.41163 -13.70445 -13.51294 -13.26631 -13.07638 -12.89083 -12.82042 -12.77409 -12.63144 -12.61760 -12.29541 -12.20264 -12.00426 -11.85846 -11.67890 -11.55921 -11.49996 -11.43417 -11.00305 -10.86737 -10.73460 -10.70706 -10.42459 -9.65918 -8.89591 -7.87996 -5.14021 1.42951 1.50350 1.51474 1.52640 1.57697 1.74985 2.23123 2.61334 2.97678 3.25792 3.45166 3.48562 3.72935 3.82066 3.86315 3.98384 4.01326 4.04585 4.07002 4.10461 4.14282 4.23079 4.35977 4.41710 4.50290 4.57734 4.63676 4.68301 4.74889 4.77666 4.83917 4.86977 4.98920 5.01191 5.08297 5.15438 5.22832 5.32477 5.39529 5.49877 5.54238 5.61243 5.64266 5.75788 5.86882 6.30542 6.37182 6.40944 7.13286 7.28801 7.43022 8.16789 8.42086 9.34253 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010020 B = 0.003906 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2793.862909 B = 7166.312210 C = 9009.130613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C -0.063 4.063 3 Si 0.955 3.045 4 H -0.286 1.286 5 H -0.296 1.296 6 H -0.282 1.282 7 C -0.229 4.229 8 H 0.065 0.935 9 N -0.727 5.727 10 C 0.154 3.846 11 H 0.049 0.951 12 C -0.141 4.141 13 C -0.106 4.106 14 C -0.126 4.126 15 C -0.127 4.127 16 C 0.108 3.892 17 N -0.591 5.591 18 C 0.514 3.486 19 O -0.564 6.564 20 C 0.052 3.948 21 H 0.101 0.899 22 C -0.141 4.141 23 C -0.129 4.129 24 C 0.044 3.956 25 H 0.131 0.869 26 C 0.521 3.479 27 N -0.823 5.823 28 O -0.585 6.585 29 O -0.362 6.362 30 C 0.100 3.900 31 H 0.250 0.750 32 H 0.377 0.623 33 H 0.045 0.955 34 H 0.080 0.920 35 H 0.040 0.960 36 H 0.074 0.926 37 H 0.050 0.950 38 H 0.059 0.941 39 H 0.093 0.907 40 H 0.046 0.954 41 H 0.066 0.934 42 H 0.113 0.887 43 H 0.119 0.881 44 H 0.088 0.912 45 H 0.140 0.860 46 H 0.074 0.926 47 H 0.422 0.578 48 H 0.413 0.587 49 H 0.099 0.901 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.128 -12.073 8.207 15.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.256 4.256 3 Si 0.786 3.214 4 H -0.212 1.212 5 H -0.223 1.223 6 H -0.209 1.209 7 C -0.361 4.361 8 H 0.083 0.917 9 N -0.368 5.368 10 C 0.045 3.955 11 H 0.066 0.934 12 C -0.181 4.181 13 C -0.144 4.144 14 C -0.164 4.164 15 C -0.166 4.166 16 C -0.014 4.014 17 N -0.324 5.324 18 C 0.302 3.698 19 O -0.442 6.442 20 C -0.009 4.009 21 H 0.118 0.882 22 C -0.178 4.178 23 C -0.166 4.166 24 C -0.017 4.017 25 H 0.148 0.852 26 C 0.305 3.695 27 N -0.389 5.389 28 O -0.464 6.464 29 O -0.280 6.280 30 C -0.023 4.023 31 H 0.059 0.941 32 H 0.210 0.790 33 H 0.064 0.936 34 H 0.098 0.902 35 H 0.058 0.942 36 H 0.093 0.907 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.111 0.889 40 H 0.065 0.935 41 H 0.084 0.916 42 H 0.130 0.870 43 H 0.137 0.863 44 H 0.107 0.893 45 H 0.158 0.842 46 H 0.093 0.907 47 H 0.255 0.745 48 H 0.245 0.755 49 H 0.117 0.883 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.835 -13.013 8.081 15.578 hybrid contribution 0.182 1.325 0.138 1.345 sum -2.653 -11.687 8.219 14.532 Atomic orbital electron populations 1.69747 1.06002 1.25810 1.59620 1.25264 0.96149 1.00033 1.04138 0.85488 0.77418 0.80672 0.77831 1.21237 1.22254 1.20874 1.19364 0.90952 0.85165 1.40612 0.91675 1.42428 1.05451 1.00224 1.88699 1.21284 0.94364 0.85038 0.94788 0.93367 1.22587 0.96058 1.00834 0.98618 1.21414 0.96106 0.98777 0.98055 1.21872 0.99965 0.95379 0.99137 1.22025 0.96029 0.96099 1.02416 1.21802 0.95301 0.95882 0.88366 1.47849 1.50917 1.28471 1.05134 1.20722 0.78910 0.85512 0.84704 1.90683 1.41185 1.26525 1.85826 1.22858 0.95684 0.97221 0.85100 0.88192 1.23051 0.91431 1.05121 0.98236 1.23154 0.95525 1.03005 0.94950 1.23418 0.90786 1.00121 0.87347 0.85175 1.20490 0.81646 0.82833 0.84563 1.43473 1.34721 1.44088 1.16652 1.90781 1.31863 1.41599 1.82187 1.89087 1.40122 1.83375 1.15378 1.22506 0.92794 0.83485 1.03551 0.94125 0.79015 0.93606 0.90155 0.94159 0.90742 0.93073 0.92290 0.88863 0.93504 0.91592 0.86974 0.86310 0.89305 0.84179 0.90716 0.74524 0.75501 0.88311 0.88383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -53.79 13.06 21.65 0.28 -53.51 16 2 C -0.06 -3.34 5.50 84.86 0.47 -2.87 16 3 Si 0.96 43.82 29.55 68.60 2.03 45.85 16 4 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 5 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 7 C -0.23 -11.60 9.94 84.03 0.83 -10.76 16 8 H 0.07 3.30 7.83 -2.91 -0.02 3.28 16 9 N -0.73 -31.55 4.99 -321.18 -1.60 -33.15 16 10 C 0.15 5.19 2.40 45.37 0.11 5.30 16 11 H 0.05 1.82 5.40 -2.39 -0.01 1.81 16 12 C -0.14 -4.33 5.26 30.59 0.16 -4.17 16 13 C -0.11 -3.01 5.67 30.46 0.17 -2.84 16 14 C -0.13 -3.64 5.43 30.78 0.17 -3.48 16 15 C -0.13 -3.29 5.55 30.87 0.17 -3.12 16 16 C 0.11 2.63 5.12 86.60 0.44 3.08 16 17 N -0.59 -15.85 1.72 -819.33 -1.41 -17.26 16 18 C 0.51 16.47 5.99 87.65 0.53 17.00 16 19 O -0.56 -22.90 15.58 15.55 0.24 -22.66 16 20 C 0.05 1.45 2.95 30.22 0.09 1.54 16 21 H 0.10 2.79 7.75 -2.39 -0.02 2.77 16 22 C -0.14 -2.59 4.95 31.59 0.16 -2.43 16 23 C -0.13 -1.88 6.57 31.90 0.21 -1.67 16 24 C 0.04 0.92 3.76 30.53 0.11 1.04 16 25 H 0.13 1.95 8.14 -2.38 -0.02 1.93 16 26 C 0.52 12.19 7.48 87.66 0.66 12.84 16 27 N -0.82 -8.98 8.86 -173.53 -1.54 -10.52 16 28 O -0.59 -21.46 17.40 15.21 0.26 -21.19 16 29 O -0.36 -11.88 10.03 -121.23 -1.22 -13.10 16 30 C 0.10 2.59 5.00 86.47 0.43 3.03 16 31 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 32 H 0.38 17.19 7.80 -92.71 -0.72 16.47 16 33 H 0.05 1.68 7.88 -2.39 -0.02 1.66 16 34 H 0.08 2.02 4.49 -2.39 -0.01 2.00 16 35 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.07 1.79 7.85 -2.39 -0.02 1.77 16 37 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.06 1.95 3.69 -2.39 -0.01 1.94 16 39 H 0.09 1.95 7.89 -2.39 -0.02 1.93 16 40 H 0.05 1.44 7.37 -2.39 -0.02 1.42 16 41 H 0.07 1.62 8.07 -2.39 -0.02 1.60 16 42 H 0.11 2.28 5.06 -2.38 -0.01 2.27 16 43 H 0.12 1.75 7.55 -2.39 -0.02 1.73 16 44 H 0.09 1.61 7.66 -2.39 -0.02 1.59 16 45 H 0.14 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.07 1.26 8.05 -2.39 -0.02 1.24 16 47 H 0.42 1.15 8.83 -92.71 -0.82 0.33 16 48 H 0.41 3.80 8.93 -92.71 -0.83 2.97 16 49 H 0.10 2.41 4.44 -2.39 -0.01 2.40 16 50 H 0.10 2.23 7.97 -2.39 -0.02 2.21 16 Total: -1.00 -80.84 379.49 0.40 -80.44 By element: Atomic # 1 Polarization: 33.96 SS G_CDS: -1.36 Total: 32.60 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: 4.71 Total: 12.49 kcal Atomic # 7 Polarization: -110.17 SS G_CDS: -4.27 Total: -114.44 kcal Atomic # 8 Polarization: -56.24 SS G_CDS: -0.71 Total: -56.95 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -80.84 0.40 -80.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088381719.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.873 kcal (2) G-P(sol) polarization free energy of solvation -80.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds