Wall clock time and date at job start Sat Apr 11 2020 05:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86798 * 119.99882 * 2 1 4 4 H 1.48496 * 109.47185 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46918 * 299.99865 * 3 2 1 6 6 H 1.48500 * 109.47505 * 59.99653 * 3 2 1 7 7 C 1.38809 * 120.00201 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00172 * 157.65507 * 7 2 1 9 9 N 1.36945 * 120.00154 * 337.65846 * 7 2 1 10 10 C 1.46502 * 119.99414 * 326.14944 * 9 7 2 11 11 C 1.53009 * 109.46532 * 264.43395 * 10 9 7 12 12 O 1.42896 * 109.46844 * 65.00723 * 11 10 9 13 13 C 1.46497 * 119.99967 * 146.14336 * 9 7 2 14 14 C 1.53042 * 109.46222 * 299.99747 * 13 9 7 15 15 C 1.53194 * 109.31009 * 181.37226 * 14 13 9 16 16 N 1.46925 * 108.77541 * 305.36968 * 15 14 13 17 17 C 1.34782 * 120.62590 * 233.58568 * 16 15 14 18 18 O 1.21277 * 120.00101 * 0.02562 * 17 16 15 19 19 C 1.50707 * 119.99563 * 180.27468 * 17 16 15 20 20 H 1.09003 * 109.29832 * 319.31185 * 19 17 16 21 21 C 1.52922 * 109.29756 * 78.69093 * 19 17 16 22 22 C 1.53341 * 108.67251 * 171.06358 * 21 19 17 23 23 C 1.53069 * 108.42499 * 292.46799 * 22 21 19 24 24 C 1.50170 * 109.89188 * 48.90305 * 23 22 21 25 25 O 1.21281 * 118.24789 * 162.44344 * 24 23 22 26 26 N 1.33358 * 123.50601 * 342.41359 * 24 23 22 27 27 C 1.46923 * 118.74316 * 53.86309 * 16 15 14 28 28 C 1.53036 * 109.44616 * 60.06397 * 13 9 7 29 29 H 0.96992 * 119.99908 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.47904 * 24.43583 * 10 9 7 31 31 H 1.09002 * 109.47173 * 144.44181 * 10 9 7 32 32 H 1.09003 * 109.46729 * 185.00639 * 11 10 9 33 33 H 1.08998 * 109.47106 * 305.00227 * 11 10 9 34 34 H 0.96705 * 113.99582 * 180.02562 * 12 11 10 35 35 H 1.09007 * 109.45728 * 180.02562 * 13 9 7 36 36 H 1.09003 * 109.49327 * 61.42745 * 14 13 9 37 37 H 1.08995 * 109.49824 * 301.32909 * 14 13 9 38 38 H 1.08998 * 109.58184 * 185.58082 * 15 14 13 39 39 H 1.08995 * 109.70092 * 65.22377 * 15 14 13 40 40 H 1.09007 * 109.60447 * 290.81968 * 21 19 17 41 41 H 1.08998 * 109.60598 * 51.30660 * 21 19 17 42 42 H 1.08996 * 109.67760 * 172.73384 * 22 21 19 43 43 H 1.09006 * 109.70645 * 52.21962 * 22 21 19 44 44 H 1.09001 * 109.40060 * 288.76703 * 23 22 21 45 45 H 1.09006 * 109.33187 * 168.98708 * 23 22 21 46 46 H 0.96999 * 117.94435 * 182.20481 * 26 24 23 47 47 H 1.08999 * 109.58505 * 65.91954 * 27 16 15 48 48 H 1.08995 * 109.58981 * 186.35237 * 27 16 15 49 49 H 1.08996 * 109.49896 * 298.56803 * 28 13 9 50 50 H 1.09005 * 109.49926 * 58.67379 * 28 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3965 1.2124 7 6 2.0104 -1.2021 0.0005 8 1 3.0295 -1.2374 -0.3550 9 7 1.4028 -2.3434 0.4519 10 6 0.4322 -2.2725 1.5469 11 6 1.1354 -2.5741 2.8719 12 8 2.0919 -1.5489 3.1476 13 6 1.7234 -3.6351 -0.1604 14 6 1.3737 -3.5942 -1.6498 15 6 1.6782 -4.9572 -2.2793 16 7 3.0771 -5.3065 -1.9972 17 6 3.9173 -5.6378 -2.9976 18 8 3.5209 -5.6490 -4.1437 19 6 5.3479 -5.9996 -2.6915 20 1 5.7325 -5.3291 -1.9229 21 6 5.4061 -7.4383 -2.1763 22 6 6.8754 -7.8671 -2.0826 23 6 7.4443 -7.9577 -3.5008 24 6 7.1064 -6.7114 -4.2674 25 8 7.7366 -6.4685 -5.2747 26 7 6.1499 -5.8577 -3.9001 27 6 3.5412 -5.2938 -0.6032 28 6 3.2173 -3.9215 0.0070 29 1 -0.4849 0.8400 0.0004 30 1 -0.0007 -1.2729 1.5847 31 1 -0.3580 -3.0046 1.3801 32 1 0.3987 -2.6091 3.6745 33 1 1.6434 -3.5360 2.8029 34 1 2.5771 -1.6758 3.9745 35 1 1.1461 -4.4211 0.3266 36 1 1.9688 -2.8250 -2.1422 37 1 0.3144 -3.3669 -1.7687 38 1 1.5250 -4.9042 -3.3572 39 1 1.0196 -5.7140 -1.8533 40 1 4.9457 -7.4924 -1.1897 41 1 4.8766 -8.0955 -2.8661 42 1 6.9433 -8.8406 -1.5972 43 1 7.4373 -7.1307 -1.5081 44 1 7.0162 -8.8222 -4.0081 45 1 8.5275 -8.0682 -3.4487 46 1 5.9774 -5.0943 -4.4731 47 1 3.0312 -6.0762 -0.0412 48 1 4.6176 -5.4630 -0.5748 49 1 3.7950 -3.1493 -0.5010 50 1 3.4701 -3.9275 1.0673 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098401520.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:02 Heat of formation + Delta-G solvation = -97.001317 kcal Electronic energy + Delta-G solvation = -31375.174666 eV Core-core repulsion = 27209.891682 eV Total energy + Delta-G solvation = -4165.282984 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.04292 -39.60458 -37.74395 -36.47609 -36.21907 -34.72002 -33.27495 -32.22702 -31.17840 -30.38720 -29.73609 -27.77204 -25.87256 -24.63526 -23.40635 -23.05593 -22.70682 -20.94057 -20.09967 -19.43525 -19.09333 -17.50514 -17.47030 -16.64655 -16.50990 -16.25153 -15.58858 -15.34218 -14.97127 -14.92553 -14.46799 -14.38233 -14.07463 -13.97976 -13.77954 -13.70806 -13.42902 -13.26969 -12.89481 -12.61662 -12.32338 -12.16657 -12.09516 -11.82663 -11.54553 -11.47568 -11.40990 -11.22257 -10.97670 -10.86179 -10.69207 -10.52899 -10.27376 -10.13017 -9.92127 -9.89811 -9.81648 -9.52150 -9.17376 -9.13078 -8.54066 -8.40325 -6.60148 -5.74962 -3.25563 2.42288 2.43831 2.84783 3.22372 3.42345 3.50520 3.52727 4.13381 4.22418 4.29280 4.39817 4.52789 4.58674 4.81045 4.96950 5.05447 5.07991 5.20942 5.29644 5.31904 5.37192 5.37566 5.43682 5.44669 5.48263 5.57547 5.73125 5.75185 5.87443 5.96111 5.99304 6.04597 6.16465 6.29425 6.37360 6.52605 6.56101 6.62756 6.70320 6.76689 7.02714 7.12397 7.13743 7.40935 7.66822 7.85720 8.00506 8.11210 8.40164 8.58457 9.21270 9.86839 10.38798 11.28088 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015197 B = 0.003005 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.033115 B = 9314.873755 C = 9753.900058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.014 3.986 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.295 1.295 6 H -0.290 1.290 7 C -0.233 4.233 8 H 0.057 0.943 9 N -0.571 5.571 10 C 0.140 3.860 11 C 0.060 3.940 12 O -0.544 6.544 13 C 0.177 3.823 14 C -0.134 4.134 15 C 0.112 3.888 16 N -0.596 5.596 17 C 0.503 3.497 18 O -0.537 6.537 19 C 0.123 3.877 20 H 0.102 0.898 21 C -0.129 4.129 22 C -0.122 4.122 23 C -0.137 4.137 24 C 0.523 3.477 25 O -0.557 6.557 26 N -0.698 5.698 27 C 0.103 3.897 28 C -0.141 4.141 29 H 0.251 0.749 30 H 0.108 0.892 31 H 0.035 0.965 32 H 0.019 0.981 33 H 0.021 0.979 34 H 0.349 0.651 35 H 0.047 0.953 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.062 0.938 40 H 0.093 0.907 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.101 0.899 45 H 0.102 0.898 46 H 0.406 0.594 47 H 0.069 0.931 48 H 0.077 0.923 49 H 0.070 0.930 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.210 -17.142 3.839 19.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.185 4.185 3 Si 0.727 3.273 4 H -0.204 1.204 5 H -0.222 1.222 6 H -0.216 1.216 7 C -0.363 4.363 8 H 0.075 0.925 9 N -0.290 5.290 10 C 0.014 3.986 11 C -0.020 4.020 12 O -0.345 6.345 13 C 0.069 3.931 14 C -0.174 4.174 15 C -0.011 4.011 16 N -0.330 5.330 17 C 0.288 3.712 18 O -0.414 6.414 19 C 0.014 3.986 20 H 0.119 0.881 21 C -0.167 4.167 22 C -0.159 4.159 23 C -0.176 4.176 24 C 0.310 3.690 25 O -0.436 6.436 26 N -0.351 5.351 27 C -0.020 4.020 28 C -0.181 4.181 29 H 0.061 0.939 30 H 0.126 0.874 31 H 0.053 0.947 32 H 0.037 0.963 33 H 0.039 0.961 34 H 0.192 0.808 35 H 0.065 0.935 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.080 0.920 40 H 0.112 0.888 41 H 0.099 0.901 42 H 0.102 0.898 43 H 0.094 0.906 44 H 0.119 0.881 45 H 0.121 0.879 46 H 0.243 0.757 47 H 0.087 0.913 48 H 0.096 0.904 49 H 0.089 0.911 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.999 -16.826 2.259 18.767 hybrid contribution 0.364 1.037 0.643 1.273 sum 8.363 -15.789 2.902 18.101 Atomic orbital electron populations 1.69966 1.05518 1.25380 1.52905 1.24938 0.94880 0.98432 1.00277 0.86335 0.79710 0.84351 0.76884 1.20409 1.22236 1.21623 1.18793 0.94063 0.85535 1.37896 0.92491 1.43761 1.48750 1.01714 1.34782 1.21074 0.90013 1.04102 0.83443 1.23090 0.90414 0.89262 0.99269 1.86861 1.55483 1.49077 1.43072 1.20300 0.92131 0.89210 0.91489 1.22321 1.02517 0.94460 0.98105 1.21799 0.79764 0.97582 1.01935 1.48142 1.11669 1.66277 1.06866 1.20613 0.87498 0.77630 0.85413 1.90722 1.77269 1.52991 1.20407 1.20953 0.89595 0.99653 0.88413 0.88065 1.21898 0.98301 0.93410 1.03074 1.21673 0.94875 1.03189 0.96201 1.21681 1.03805 0.96172 0.95978 1.20143 0.78980 0.84674 0.85173 1.90770 1.50846 1.75156 1.26823 1.45253 1.35741 1.28691 1.25415 1.22084 0.99296 0.99571 0.81094 1.22468 1.00762 0.94414 1.00481 0.93859 0.87425 0.94690 0.96298 0.96103 0.80834 0.93473 0.91020 0.90863 0.89679 0.91967 0.88809 0.90115 0.89799 0.90565 0.88073 0.87933 0.75722 0.91283 0.90440 0.91131 0.91248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.01 11.34 55.49 0.63 -24.38 16 2 C 0.01 0.37 4.91 -17.43 -0.09 0.28 16 3 Si 0.90 21.96 29.61 -169.99 -5.03 16.92 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 7 C -0.23 -5.96 8.06 -15.06 -0.12 -6.08 16 8 H 0.06 1.49 6.87 -52.49 -0.36 1.13 16 9 N -0.57 -12.66 2.35 -165.61 -0.39 -13.05 16 10 C 0.14 3.04 5.57 -4.04 -0.02 3.02 16 11 C 0.06 1.08 7.39 37.16 0.27 1.36 16 12 O -0.54 -10.64 13.40 -35.23 -0.47 -11.11 16 13 C 0.18 3.12 2.59 -67.89 -0.18 2.94 16 14 C -0.13 -2.38 5.31 -26.61 -0.14 -2.52 16 15 C 0.11 1.61 6.43 -3.71 -0.02 1.59 16 16 N -0.60 -7.67 2.97 -172.50 -0.51 -8.18 16 17 C 0.50 6.74 6.86 -10.98 -0.08 6.67 16 18 O -0.54 -9.29 15.79 5.56 0.09 -9.20 16 19 C 0.12 1.22 2.64 -69.53 -0.18 1.04 16 20 H 0.10 0.87 6.57 -51.93 -0.34 0.53 16 21 C -0.13 -0.90 5.08 -26.60 -0.14 -1.04 16 22 C -0.12 -0.67 6.03 -26.52 -0.16 -0.83 16 23 C -0.14 -1.05 6.03 -28.10 -0.17 -1.22 16 24 C 0.52 6.40 7.71 -11.87 -0.09 6.31 16 25 O -0.56 -9.21 17.78 5.56 0.10 -9.11 16 26 N -0.70 -8.32 4.79 -55.99 -0.27 -8.59 16 27 C 0.10 1.09 5.67 -3.48 -0.02 1.07 16 28 C -0.14 -2.09 5.32 -26.38 -0.14 -2.23 16 29 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 30 H 0.11 2.78 5.34 -51.93 -0.28 2.50 16 31 H 0.03 0.71 8.04 -51.93 -0.42 0.29 16 32 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.35 4.85 9.12 45.56 0.42 5.27 16 35 H 0.05 0.77 7.87 -51.92 -0.41 0.36 16 36 H 0.07 1.49 7.71 -51.93 -0.40 1.09 16 37 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 38 H 0.08 1.34 7.01 -51.93 -0.36 0.98 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.09 0.49 6.99 -51.93 -0.36 0.13 16 41 H 0.08 0.64 8.10 -51.93 -0.42 0.22 16 42 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.08 0.39 8.13 -51.93 -0.42 -0.03 16 44 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.41 5.41 8.44 -40.82 -0.34 5.06 16 47 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.08 0.62 4.98 -51.93 -0.26 0.36 16 49 H 0.07 1.22 7.03 -51.93 -0.37 0.86 16 50 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 388.73 15.07 5.86 5.86 Total: -1.00 -34.31 388.73 -8.54 -42.84 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -7.27 Total: 7.63 kcal Atomic # 6 Polarization: 11.63 SS G_CDS: -1.27 Total: 10.36 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: -0.54 Total: -54.19 kcal Atomic # 8 Polarization: -29.14 SS G_CDS: -0.29 Total: -29.42 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.31 -8.54 -42.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098401520.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.157 kcal (2) G-P(sol) polarization free energy of solvation -34.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds