Wall clock time and date at job start Sat Apr 11 2020 05:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86797 * 120.00580 * 2 1 4 4 H 1.48492 * 109.47117 * 239.99931 * 3 2 1 5 5 H 1.48502 * 109.46737 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47108 * 119.99640 * 3 2 1 7 7 C 1.38950 * 119.99417 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99876 * 179.97438 * 7 2 1 9 9 N 1.37100 * 120.00502 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00276 * 180.02562 * 9 7 2 11 11 O 1.21285 * 120.00077 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99942 * 179.97438 * 10 9 7 13 13 N 1.46897 * 109.46958 * 173.77858 * 12 10 9 14 14 C 1.46843 * 110.99879 * 169.43117 * 13 12 10 15 15 C 1.53039 * 109.52640 * 185.84071 * 14 13 12 16 16 C 1.53208 * 109.29718 * 300.82414 * 15 14 13 17 17 H 1.09004 * 109.51195 * 297.75494 * 16 15 14 18 18 N 1.46500 * 109.57570 * 177.53905 * 16 15 14 19 19 C 1.34775 * 119.99992 * 85.33852 * 18 16 15 20 20 O 1.21275 * 120.00235 * 359.97438 * 19 18 16 21 21 C 1.50697 * 119.99840 * 180.02562 * 19 18 16 22 22 C 1.54260 * 110.03392 * 297.90434 * 21 19 18 23 23 C 1.54960 * 104.16608 * 217.13518 * 22 21 19 24 24 C 1.54893 * 102.77256 * 37.88792 * 23 22 21 25 25 C 1.53877 * 110.03217 * 180.68593 * 21 19 18 26 26 C 1.53121 * 109.11655 * 57.62566 * 16 15 14 27 27 H 1.09004 * 109.50127 * 62.32544 * 26 16 15 28 28 O 1.42901 * 109.50135 * 182.40010 * 26 16 15 29 29 C 1.46844 * 111.00213 * 293.64427 * 13 12 10 30 30 H 0.97000 * 119.99377 * 0.02562 * 1 2 3 31 31 H 0.97004 * 119.99441 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.46736 * 53.78082 * 12 10 9 33 33 H 1.08991 * 109.46911 * 293.78236 * 12 10 9 34 34 H 1.08996 * 109.46478 * 305.85956 * 14 13 12 35 35 H 1.09005 * 109.46087 * 65.82581 * 14 13 12 36 36 H 1.08993 * 109.49917 * 60.76129 * 15 14 13 37 37 H 1.08997 * 109.50701 * 180.84324 * 15 14 13 38 38 H 0.96995 * 119.99749 * 265.34113 * 18 16 15 39 39 H 1.09009 * 110.01810 * 59.30063 * 21 19 18 40 40 H 1.09006 * 110.48712 * 335.78890 * 22 21 19 41 41 H 1.09004 * 110.48843 * 98.42459 * 22 21 19 42 42 H 1.09003 * 110.72288 * 279.58058 * 23 22 21 43 43 H 1.08997 * 110.76906 * 156.21876 * 23 22 21 44 44 H 1.09004 * 110.48761 * 203.40335 * 24 23 22 45 45 H 1.09003 * 110.49093 * 80.76389 * 24 23 22 46 46 H 1.08993 * 110.03683 * 238.56523 * 25 21 19 47 47 H 1.09000 * 110.03168 * 0.02562 * 25 21 19 48 48 H 0.96701 * 114.00011 * 179.97438 * 28 26 16 49 49 H 1.09002 * 109.46560 * 54.14144 * 29 13 12 50 50 H 1.09007 * 109.45422 * 294.17317 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 3.1020 1.6962 -1.2124 5 1 1.2833 2.7464 -0.0006 6 1 3.1020 1.6962 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2035 0.0001 9 7 1.3233 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0016 11 8 3.2099 -3.5580 0.0021 12 6 1.2435 -4.8630 0.0022 13 7 2.1910 -5.9756 -0.1468 14 6 1.5318 -7.2646 0.0987 15 6 2.5747 -8.3845 0.0787 16 6 3.2754 -8.3995 -1.2836 17 1 2.5464 -8.6118 -2.0657 18 7 4.3157 -9.4311 -1.2892 19 6 3.9990 -10.7058 -1.5914 20 8 2.8529 -10.9990 -1.8583 21 6 5.0689 -11.7670 -1.5966 22 6 6.1349 -11.4375 -2.6618 23 6 6.5301 -12.8187 -3.2427 24 6 5.1791 -13.5755 -3.2761 25 6 4.4616 -13.1260 -1.9865 26 6 3.9117 -7.0297 -1.5354 27 1 4.6683 -6.8347 -0.7754 28 8 4.5200 -7.0167 -2.8284 29 6 2.8301 -5.9492 -1.4686 30 1 -0.4849 0.8401 -0.0004 31 1 0.3532 -2.3906 0.0005 32 1 0.5363 -4.8745 -0.8272 33 1 0.7026 -4.9697 0.9424 34 1 1.0415 -7.2423 1.0719 35 1 0.7889 -7.4463 -0.6780 36 1 3.3102 -8.2107 0.8641 37 1 2.0830 -9.3427 0.2461 38 1 5.2322 -9.1967 -1.0754 39 1 5.5328 -11.8340 -0.6124 40 1 5.7123 -10.8030 -3.4409 41 1 6.9975 -10.9552 -2.2020 42 1 7.2397 -13.3240 -2.5874 43 1 6.9385 -12.7129 -4.2477 44 1 5.3448 -14.6528 -3.2648 45 1 4.6016 -13.2867 -4.1543 46 1 4.6315 -13.8527 -1.1921 47 1 3.3930 -13.0178 -2.1724 48 1 4.9434 -6.1775 -3.0555 49 1 3.2827 -4.9715 -1.6338 50 1 2.0810 -6.1372 -2.2379 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099611404.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:28 Heat of formation + Delta-G solvation = -132.671482 kcal Electronic energy + Delta-G solvation = -30087.726811 eV Core-core repulsion = 25920.897052 eV Total energy + Delta-G solvation = -4166.829758 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.55690 -39.35737 -38.02406 -37.14447 -36.02732 -34.79229 -33.89206 -31.74571 -31.21839 -29.73793 -29.32429 -28.92306 -27.06187 -24.69142 -23.39009 -22.74734 -21.68371 -20.96456 -20.30962 -19.45328 -19.21691 -17.91351 -17.60657 -17.23424 -16.66144 -16.03307 -15.90216 -15.42405 -15.26130 -14.93346 -14.69933 -14.45245 -14.02644 -13.87038 -13.75062 -13.66482 -13.60969 -13.32145 -12.93330 -12.68241 -12.34507 -12.00040 -11.92071 -11.71166 -11.60087 -11.49401 -11.42369 -11.39722 -11.26428 -11.17029 -11.06518 -10.99426 -10.80675 -10.47394 -10.45711 -10.24693 -10.06204 -9.74677 -9.50384 -9.13355 -8.50981 -8.02347 -7.93816 -6.44849 -3.85976 2.54143 3.02365 3.17195 3.23537 3.27285 3.77744 3.86585 4.08842 4.16772 4.23847 4.28282 4.45395 4.70766 4.90250 4.95852 5.00822 5.03800 5.10220 5.14082 5.18924 5.19924 5.22347 5.29207 5.30591 5.35673 5.48812 5.52373 5.61550 5.62850 5.68755 5.76993 5.79572 5.84859 5.85745 5.92676 5.96150 6.00262 6.07261 6.15505 6.22835 6.24549 6.41977 7.13860 7.24906 7.40861 7.51557 7.62685 8.02351 8.13216 8.57909 9.14340 9.50779 10.02064 10.72677 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.030436 B = 0.001995 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.754024 B =14031.937852 C =14617.736187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.300 4.300 8 H 0.102 0.898 9 N -0.563 5.563 10 C 0.442 3.558 11 O -0.580 6.580 12 C 0.046 3.954 13 N -0.512 5.512 14 C 0.054 3.946 15 C -0.121 4.121 16 C 0.154 3.846 17 H 0.090 0.910 18 N -0.715 5.715 19 C 0.520 3.480 20 O -0.543 6.543 21 C -0.114 4.114 22 C -0.115 4.115 23 C -0.124 4.124 24 C -0.125 4.125 25 C -0.119 4.119 26 C 0.106 3.894 27 H 0.071 0.929 28 O -0.566 6.566 29 C 0.028 3.972 30 H 0.272 0.728 31 H 0.392 0.608 32 H 0.048 0.952 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.035 0.965 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.401 0.599 39 H 0.097 0.903 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.066 0.934 47 H 0.090 0.910 48 H 0.383 0.617 49 H 0.104 0.896 50 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.490 -22.820 -3.409 24.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.120 0.880 9 N -0.199 5.199 10 C 0.228 3.772 11 O -0.464 6.464 12 C -0.085 4.085 13 N -0.238 5.238 14 C -0.074 4.074 15 C -0.160 4.160 16 C 0.049 3.951 17 H 0.108 0.892 18 N -0.364 5.364 19 C 0.306 3.694 20 O -0.420 6.420 21 C -0.135 4.135 22 C -0.153 4.153 23 C -0.162 4.162 24 C -0.162 4.162 25 C -0.157 4.157 26 C 0.046 3.954 27 H 0.089 0.911 28 O -0.371 6.371 29 C -0.100 4.100 30 H 0.082 0.918 31 H 0.225 0.775 32 H 0.066 0.934 33 H 0.110 0.890 34 H 0.100 0.900 35 H 0.053 0.947 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.235 0.765 39 H 0.115 0.885 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.085 0.915 47 H 0.108 0.892 48 H 0.231 0.769 49 H 0.122 0.878 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 8.479 -23.413 -3.271 25.115 hybrid contribution -0.298 1.622 -0.349 1.685 sum 8.181 -21.791 -3.620 23.556 Atomic orbital electron populations 1.69606 1.05940 1.28309 1.50331 1.25272 0.95640 0.99749 0.97264 0.85913 0.78764 0.80465 0.79049 1.19931 1.20973 1.19886 1.19635 0.93303 0.82200 1.47847 0.87969 1.41880 1.09231 1.04602 1.64231 1.19723 0.88411 0.84506 0.84597 1.90483 1.13650 1.86960 1.55320 1.21858 0.93641 0.91030 1.01941 1.61453 1.31382 1.01348 1.29579 1.22117 0.95162 0.88669 1.01467 1.21933 0.98781 0.98605 0.96706 1.21049 0.90193 0.85550 0.98322 0.89226 1.45919 1.12133 1.07759 1.70634 1.20571 0.89830 0.83310 0.75656 1.90659 1.21439 1.81192 1.48682 1.21956 0.95382 0.94749 1.01416 1.22375 0.97281 0.98063 0.97595 1.22516 0.97370 0.95287 1.00978 1.22370 0.95982 0.99763 0.98113 1.22163 1.02239 0.93857 0.97439 1.21978 0.94846 0.93385 0.85220 0.91082 1.86463 1.75484 1.40463 1.34735 1.22823 0.96804 1.01090 0.89312 0.91783 0.77467 0.93382 0.88998 0.90012 0.94694 0.90487 0.90456 0.76521 0.88502 0.90863 0.90869 0.91299 0.91337 0.91574 0.91531 0.91539 0.89196 0.76902 0.87762 0.94808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.18 13.05 55.50 0.72 -23.46 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.72 29.55 -169.99 -5.02 15.69 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.30 -8.18 9.68 -14.93 -0.14 -8.33 16 8 H 0.10 2.90 7.16 -52.49 -0.38 2.53 16 9 N -0.56 -13.92 5.29 -10.96 -0.06 -13.98 16 10 C 0.44 10.07 7.31 -10.99 -0.08 9.99 16 11 O -0.58 -14.90 14.28 5.55 0.08 -14.82 16 12 C 0.05 0.81 5.45 -4.98 -0.03 0.78 16 13 N -0.51 -8.17 4.35 -236.12 -1.03 -9.20 16 14 C 0.05 0.71 5.46 -3.83 -0.02 0.69 16 15 C -0.12 -1.45 5.68 -26.60 -0.15 -1.61 16 16 C 0.15 1.93 2.21 -67.76 -0.15 1.78 16 17 H 0.09 1.34 7.58 -51.93 -0.39 0.95 16 18 N -0.71 -7.64 4.93 -53.64 -0.26 -7.90 16 19 C 0.52 6.04 6.97 -10.99 -0.08 5.96 16 20 O -0.54 -8.31 14.87 5.56 0.08 -8.23 16 21 C -0.11 -0.95 3.29 -90.66 -0.30 -1.25 16 22 C -0.12 -0.84 6.29 -25.04 -0.16 -0.99 16 23 C -0.12 -0.80 6.91 -24.70 -0.17 -0.97 16 24 C -0.12 -0.91 6.83 -25.07 -0.17 -1.09 16 25 C -0.12 -1.02 6.40 -25.61 -0.16 -1.18 16 26 C 0.11 1.38 3.13 -26.65 -0.08 1.29 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 28 O -0.57 -7.00 13.23 -35.23 -0.47 -7.47 16 29 C 0.03 0.44 4.74 -3.84 -0.02 0.42 16 30 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 31 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 32 H 0.05 0.78 8.12 -51.93 -0.42 0.35 16 33 H 0.09 1.44 7.98 -51.93 -0.41 1.02 16 34 H 0.08 0.97 8.01 -51.93 -0.42 0.55 16 35 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.40 3.46 8.59 -40.82 -0.35 3.11 16 39 H 0.10 0.64 8.14 -51.92 -0.42 0.22 16 40 H 0.07 0.65 7.85 -51.93 -0.41 0.24 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.09 0.99 6.39 -51.93 -0.33 0.66 16 48 H 0.38 3.63 9.08 45.56 0.41 4.04 16 49 H 0.10 1.91 6.05 -51.93 -0.31 1.60 16 50 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 397.45 15.07 5.99 5.99 Total: -1.00 -32.51 397.45 -9.31 -41.83 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: -7.54 Total: 15.54 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: -1.81 Total: 6.01 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: -0.62 Total: -54.54 kcal Atomic # 8 Polarization: -30.22 SS G_CDS: -0.30 Total: -30.52 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.51 -9.31 -41.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099611404.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.842 kcal (2) G-P(sol) polarization free energy of solvation -32.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds