Wall clock time and date at job start Sat Apr 11 2020 05:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86807 * 119.99835 * 2 1 4 4 H 1.48497 * 109.46851 * 239.99795 * 3 2 1 5 5 H 1.48504 * 109.47172 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.46773 * 119.99679 * 3 2 1 7 7 C 1.38948 * 119.99843 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99575 * 180.02562 * 7 2 1 9 9 N 1.37091 * 119.99963 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99566 * 179.97438 * 9 7 2 11 11 O 1.21291 * 120.00380 * 359.97438 * 10 9 7 12 12 C 1.50707 * 119.99817 * 179.97438 * 10 9 7 13 13 N 1.46902 * 109.47079 * 180.02562 * 12 10 9 14 14 C 1.46848 * 110.99842 * 294.21225 * 13 12 10 15 15 C 1.53039 * 109.52206 * 174.16372 * 14 13 12 16 16 C 1.53127 * 109.30993 * 59.15660 * 15 14 13 17 17 H 1.08995 * 109.49209 * 62.29263 * 16 15 14 18 18 N 1.46504 * 109.55139 * 182.48188 * 16 15 14 19 19 C 1.34780 * 119.99709 * 274.69766 * 18 16 15 20 20 O 1.21278 * 120.00110 * 359.97438 * 19 18 16 21 21 C 1.50700 * 119.99430 * 180.02562 * 19 18 16 22 22 C 1.53005 * 109.46836 * 180.02562 * 21 19 18 23 23 C 1.53774 * 113.61454 * 272.49374 * 22 21 19 24 24 C 1.53772 * 87.08405 * 220.01850 * 23 22 21 25 25 C 1.53775 * 87.08167 * 25.43293 * 24 23 22 26 26 C 1.53113 * 109.15521 * 302.40448 * 16 15 14 27 27 H 1.09002 * 109.50833 * 297.63006 * 26 16 15 28 28 O 1.42903 * 109.50211 * 177.56174 * 26 16 15 29 29 C 1.46846 * 110.99895 * 170.00213 * 13 12 10 30 30 H 0.97002 * 120.00038 * 0.02562 * 1 2 3 31 31 H 0.96996 * 120.00571 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.46979 * 59.99706 * 12 10 9 33 33 H 1.09000 * 109.47289 * 300.00134 * 12 10 9 34 34 H 1.09005 * 109.46173 * 294.17566 * 14 13 12 35 35 H 1.08994 * 109.46522 * 54.15270 * 14 13 12 36 36 H 1.08997 * 109.50164 * 179.12019 * 15 14 13 37 37 H 1.08997 * 109.50278 * 299.19329 * 15 14 13 38 38 H 0.96994 * 119.99912 * 94.70178 * 18 16 15 39 39 H 1.09007 * 109.47097 * 299.99583 * 21 19 18 40 40 H 1.08999 * 109.47760 * 60.00016 * 21 19 18 41 41 H 1.09000 * 112.84639 * 43.80063 * 22 21 19 42 42 H 1.09007 * 113.61619 * 334.57100 * 23 22 21 43 43 H 1.09003 * 113.61597 * 105.46565 * 23 22 21 44 44 H 1.08997 * 113.61467 * 270.88452 * 24 23 22 45 45 H 1.09003 * 113.61396 * 139.97949 * 24 23 22 46 46 H 1.09003 * 113.61692 * 220.02187 * 25 24 23 47 47 H 1.09005 * 113.61786 * 89.11416 * 25 24 23 48 48 H 0.96700 * 114.00311 * 180.02562 * 28 26 16 49 49 H 1.09001 * 109.45999 * 65.81967 * 29 13 12 50 50 H 1.08999 * 109.46280 * 305.85225 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7466 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9973 -3.5577 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2438 -4.8629 0.0011 13 7 2.1984 -5.9795 0.0016 14 6 2.9677 -6.0146 -1.2487 15 6 4.0476 -7.0949 -1.1546 16 6 3.3852 -8.4524 -0.9025 17 1 2.7389 -8.7034 -1.7435 18 7 4.4173 -9.4812 -0.7525 19 6 4.9292 -10.0862 -1.8427 20 8 4.5351 -9.7792 -2.9478 21 6 5.9905 -11.1449 -1.6883 22 6 6.3963 -11.6653 -3.0687 23 6 5.5213 -12.8257 -3.5712 24 6 6.8128 -13.4620 -4.1113 25 6 7.5637 -12.6657 -3.0312 26 6 2.5507 -8.3740 0.3788 27 1 3.2032 -8.1621 1.2258 28 8 1.8837 -9.6199 0.5906 29 6 1.5142 -7.2567 0.2402 30 1 -0.4850 0.8401 -0.0004 31 1 0.3534 -2.3906 0.0005 32 1 0.6167 -4.9208 -0.8886 33 1 0.6174 -4.9205 0.8913 34 1 2.2996 -6.2404 -2.0800 35 1 3.4375 -5.0450 -1.4135 36 1 4.6082 -7.1314 -2.0886 37 1 4.7245 -6.8621 -0.3327 38 1 4.7322 -9.7270 0.1314 39 1 6.8612 -10.7168 -1.1914 40 1 5.5988 -11.9676 -1.0901 41 1 6.5281 -10.8677 -3.7997 42 1 5.0539 -13.3988 -2.7703 43 1 4.8177 -12.5359 -4.3516 44 1 7.0578 -13.1564 -5.1285 45 1 6.8599 -14.5418 -3.9697 46 1 8.5091 -12.2466 -3.3757 47 1 7.6548 -13.1950 -2.0826 48 1 1.3350 -9.6420 1.3866 49 1 0.8529 -7.4765 -0.5980 50 1 0.9282 -7.1891 1.1568 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099755764.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:30 Heat of formation + Delta-G solvation = -104.067444 kcal Electronic energy + Delta-G solvation = -29683.828259 eV Core-core repulsion = 25518.238864 eV Total energy + Delta-G solvation = -4165.589394 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.43133 -39.44674 -38.44433 -37.80532 -36.05093 -34.76079 -33.86320 -31.95122 -31.22443 -30.32135 -29.61866 -27.13532 -25.86211 -24.80563 -23.85980 -23.13923 -22.37037 -20.52548 -19.97185 -19.61697 -19.23781 -17.92154 -17.37942 -17.24122 -16.56118 -16.10986 -15.88957 -15.40797 -14.99160 -14.94057 -14.73439 -14.63516 -14.09769 -14.01545 -13.92361 -13.62676 -13.37953 -13.23132 -12.94173 -12.72694 -12.58865 -12.41131 -12.12810 -11.95158 -11.70792 -11.56561 -11.38848 -11.26949 -11.09203 -10.91433 -10.77870 -10.59621 -10.53667 -10.45016 -10.44638 -10.27609 -10.22047 -9.76510 -9.48585 -9.08274 -8.48190 -8.00815 -7.90796 -6.42899 -3.83792 2.60548 3.04745 3.19204 3.25159 3.29243 3.69697 3.88211 4.07664 4.23545 4.29438 4.35993 4.43346 4.59619 4.63049 4.80895 4.87886 4.98200 5.04169 5.08422 5.20332 5.23639 5.26233 5.31510 5.36536 5.42353 5.46220 5.51493 5.60990 5.61379 5.66165 5.69188 5.75409 5.81941 5.82521 5.90931 5.99886 6.03567 6.23021 6.25587 6.30836 6.41907 6.50396 7.18166 7.23493 7.43302 7.46700 7.53904 8.04557 8.18489 8.60088 9.16582 9.52679 10.04243 10.74649 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021790 B = 0.001941 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.659551 B =14418.717968 C =15269.087836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.443 3.557 11 O -0.577 6.577 12 C 0.047 3.953 13 N -0.512 5.512 14 C 0.052 3.948 15 C -0.119 4.119 16 C 0.154 3.846 17 H 0.089 0.911 18 N -0.720 5.720 19 C 0.513 3.487 20 O -0.540 6.540 21 C -0.132 4.132 22 C -0.095 4.095 23 C -0.135 4.135 24 C -0.143 4.143 25 C -0.139 4.139 26 C 0.103 3.897 27 H 0.071 0.929 28 O -0.563 6.563 29 C 0.027 3.973 30 H 0.272 0.728 31 H 0.392 0.608 32 H 0.049 0.951 33 H 0.089 0.911 34 H 0.027 0.973 35 H 0.111 0.889 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.399 0.601 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.077 0.923 43 H 0.069 0.931 44 H 0.079 0.921 45 H 0.065 0.935 46 H 0.067 0.933 47 H 0.080 0.920 48 H 0.379 0.621 49 H 0.041 0.959 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.904 -24.878 -0.261 25.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.199 5.199 10 C 0.228 3.772 11 O -0.462 6.462 12 C -0.084 4.084 13 N -0.238 5.238 14 C -0.076 4.076 15 C -0.158 4.158 16 C 0.050 3.950 17 H 0.107 0.893 18 N -0.370 5.370 19 C 0.300 3.700 20 O -0.416 6.416 21 C -0.172 4.172 22 C -0.113 4.113 23 C -0.172 4.172 24 C -0.181 4.181 25 C -0.176 4.176 26 C 0.043 3.957 27 H 0.089 0.911 28 O -0.368 6.368 29 C -0.103 4.103 30 H 0.082 0.918 31 H 0.225 0.775 32 H 0.067 0.933 33 H 0.107 0.893 34 H 0.045 0.955 35 H 0.129 0.871 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.233 0.767 39 H 0.112 0.888 40 H 0.110 0.890 41 H 0.118 0.882 42 H 0.096 0.904 43 H 0.087 0.913 44 H 0.098 0.902 45 H 0.084 0.916 46 H 0.086 0.914 47 H 0.099 0.901 48 H 0.226 0.774 49 H 0.059 0.941 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.933 -24.582 -1.240 25.860 hybrid contribution -1.122 0.855 0.455 1.482 sum 6.811 -23.728 -0.785 24.699 Atomic orbital electron populations 1.69604 1.05933 1.28276 1.50464 1.25262 0.95633 0.99724 0.97288 0.85917 0.78761 0.80467 0.79068 1.19913 1.20989 1.19900 1.19645 0.93337 0.82193 1.47734 0.87937 1.41854 1.09195 1.04573 1.64317 1.19695 0.88404 0.84498 0.84566 1.90484 1.13645 1.86842 1.55184 1.21843 0.93859 0.91078 1.01658 1.61502 1.24976 1.00917 1.36379 1.22284 0.95019 1.01562 0.88733 1.21906 0.98652 0.92161 1.03036 1.21036 0.88635 0.87980 0.97383 0.89271 1.45963 1.41308 1.40429 1.09317 1.20686 0.82801 0.82113 0.84397 1.90697 1.60955 1.64592 1.25395 1.21705 0.98005 0.97888 0.99558 1.22341 0.96352 0.96808 0.95828 1.22942 0.96553 0.96811 1.00924 1.22796 0.97012 0.99421 0.98832 1.22987 0.97486 0.97710 0.99422 1.22018 0.93042 0.83094 0.97519 0.91091 1.86548 1.66509 1.34289 1.49480 1.22752 0.95768 0.90046 1.01700 0.91816 0.77485 0.93279 0.89282 0.95520 0.87115 0.90556 0.90457 0.76709 0.88826 0.88967 0.88174 0.90430 0.91255 0.90227 0.91607 0.91440 0.90136 0.77409 0.94098 0.90149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.32 13.05 55.50 0.72 -23.60 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.93 29.55 -169.99 -5.02 15.91 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 7 C -0.30 -8.25 9.68 -14.94 -0.14 -8.39 16 8 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 9 N -0.56 -14.04 5.29 -10.96 -0.06 -14.10 16 10 C 0.44 10.21 7.46 -10.98 -0.08 10.13 16 11 O -0.58 -15.12 13.90 5.55 0.08 -15.04 16 12 C 0.05 0.81 5.45 -4.97 -0.03 0.79 16 13 N -0.51 -8.18 4.40 -236.11 -1.04 -9.22 16 14 C 0.05 0.86 5.11 -3.83 -0.02 0.84 16 15 C -0.12 -1.68 5.67 -26.65 -0.15 -1.84 16 16 C 0.15 1.94 2.20 -67.80 -0.15 1.79 16 17 H 0.09 1.34 7.58 -51.93 -0.39 0.95 16 18 N -0.72 -7.59 4.99 -53.68 -0.27 -7.86 16 19 C 0.51 5.97 7.80 -10.98 -0.09 5.89 16 20 O -0.54 -8.46 15.42 5.56 0.09 -8.38 16 21 C -0.13 -1.03 5.54 -27.88 -0.15 -1.19 16 22 C -0.09 -0.81 3.15 -89.81 -0.28 -1.09 16 23 C -0.13 -1.14 7.63 -25.93 -0.20 -1.34 16 24 C -0.14 -1.00 8.08 -25.93 -0.21 -1.21 16 25 C -0.14 -0.92 7.64 -25.92 -0.20 -1.12 16 26 C 0.10 1.13 3.13 -26.66 -0.08 1.05 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 O -0.56 -5.50 13.23 -35.23 -0.47 -5.97 16 29 C 0.03 0.33 5.09 -3.84 -0.02 0.31 16 30 H 0.27 6.97 8.31 -40.82 -0.34 6.64 16 31 H 0.39 9.36 7.90 -40.82 -0.32 9.04 16 32 H 0.05 0.80 8.12 -51.93 -0.42 0.37 16 33 H 0.09 1.37 7.99 -51.93 -0.41 0.96 16 34 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.11 2.21 5.78 -51.93 -0.30 1.91 16 36 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.40 3.18 8.61 -40.82 -0.35 2.83 16 39 H 0.09 0.58 8.14 -51.92 -0.42 0.16 16 40 H 0.09 0.58 7.84 -51.93 -0.41 0.17 16 41 H 0.10 1.05 7.68 -51.93 -0.40 0.65 16 42 H 0.08 0.60 7.90 -51.93 -0.41 0.19 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 47 H 0.08 0.45 8.10 -51.93 -0.42 0.03 16 48 H 0.38 2.12 9.08 45.56 0.41 2.53 16 49 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 50 H 0.08 0.84 8.01 -51.93 -0.42 0.43 16 LS Contribution 401.76 15.07 6.05 6.05 Total: -1.00 -33.36 401.76 -9.39 -42.75 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: -7.58 Total: 14.32 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: -1.90 Total: 5.12 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: -0.64 Total: -54.78 kcal Atomic # 8 Polarization: -29.08 SS G_CDS: -0.30 Total: -29.38 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.36 -9.39 -42.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099755764.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.315 kcal (2) G-P(sol) polarization free energy of solvation -33.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds