Wall clock time and date at job start Sat Apr 11 2020 05:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86804 * 120.00143 * 2 1 4 4 H 1.48502 * 109.46798 * 270.00232 * 3 2 1 5 5 H 1.48500 * 109.46779 * 29.99926 * 3 2 1 6 6 H 1.48499 * 109.47190 * 149.99970 * 3 2 1 7 7 C 1.38949 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00042 * 179.97438 * 7 2 1 9 9 N 1.37099 * 120.00194 * 0.02562 * 7 2 1 10 10 C 1.34772 * 120.00368 * 179.97438 * 9 7 2 11 11 O 1.21296 * 119.99561 * 359.97438 * 10 9 7 12 12 C 1.50694 * 120.00436 * 179.97438 * 10 9 7 13 13 N 1.46897 * 109.47464 * 173.78189 * 12 10 9 14 14 C 1.46844 * 111.00435 * 169.43432 * 13 12 10 15 15 C 1.53035 * 109.52851 * 185.83808 * 14 13 12 16 16 C 1.53113 * 109.27809 * 300.82056 * 15 14 13 17 17 H 1.09003 * 109.57623 * 177.58689 * 16 15 14 18 18 N 1.46502 * 109.52398 * 297.74855 * 16 15 14 19 19 C 1.34778 * 119.99590 * 274.68051 * 18 16 15 20 20 O 1.21275 * 120.00317 * 0.02562 * 19 18 16 21 21 C 1.50700 * 119.99881 * 179.97438 * 19 18 16 22 22 C 1.52995 * 109.47267 * 180.02562 * 21 19 18 23 23 C 1.53781 * 113.61461 * 272.49901 * 22 21 19 24 24 C 1.53781 * 87.08048 * 220.01774 * 23 22 21 25 25 C 1.53775 * 87.08159 * 25.43353 * 24 23 22 26 26 C 1.53123 * 109.16074 * 57.65091 * 16 15 14 27 27 H 1.09006 * 109.50308 * 62.29105 * 26 16 15 28 28 O 1.42904 * 109.50414 * 182.40340 * 26 16 15 29 29 C 1.46846 * 111.00043 * 293.64615 * 13 12 10 30 30 H 0.97004 * 119.99699 * 0.02562 * 1 2 3 31 31 H 0.97000 * 120.00009 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.47162 * 53.77923 * 12 10 9 33 33 H 1.09000 * 109.46985 * 293.78174 * 12 10 9 34 34 H 1.09003 * 109.45894 * 305.85817 * 14 13 12 35 35 H 1.09007 * 109.46410 * 65.81852 * 14 13 12 36 36 H 1.08996 * 109.50260 * 180.87656 * 15 14 13 37 37 H 1.09010 * 109.49774 * 60.76048 * 15 14 13 38 38 H 0.96992 * 119.99828 * 94.68192 * 18 16 15 39 39 H 1.09001 * 109.46812 * 300.00711 * 21 19 18 40 40 H 1.09002 * 109.46864 * 60.00508 * 21 19 18 41 41 H 1.08999 * 112.84843 * 43.80736 * 22 21 19 42 42 H 1.08995 * 113.61488 * 334.56630 * 23 22 21 43 43 H 1.08995 * 113.61271 * 105.46745 * 23 22 21 44 44 H 1.08999 * 113.61399 * 270.88556 * 24 23 22 45 45 H 1.08999 * 113.61267 * 139.98126 * 24 23 22 46 46 H 1.08994 * 113.61642 * 220.01774 * 25 24 23 47 47 H 1.09007 * 113.61916 * 89.11281 * 25 24 23 48 48 H 0.96698 * 113.99880 * 179.80761 * 28 26 16 49 49 H 1.09006 * 109.45921 * 294.17718 * 29 13 12 50 50 H 1.08997 * 109.46385 * 54.13797 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3234 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2101 -3.5578 0.0001 12 6 1.2437 -4.8629 0.0011 13 7 2.1911 -5.9755 -0.1490 14 6 1.5323 -7.2646 0.0963 15 6 2.5752 -8.3844 0.0751 16 6 3.2741 -8.3984 -1.2871 17 1 4.0477 -9.1664 -1.2928 18 7 2.2936 -8.6833 -2.3377 19 6 1.9793 -9.9591 -2.6380 20 8 2.5078 -10.8711 -2.0383 21 6 0.9702 -10.2522 -3.7182 22 6 0.7975 -11.7660 -3.8576 23 6 1.8016 -12.4140 -4.8254 24 6 0.6400 -13.2937 -5.3170 25 6 -0.3030 -12.1714 -4.8523 26 6 3.9109 -7.0289 -1.5394 27 1 4.6681 -6.8342 -0.7798 28 8 4.5176 -7.0158 -2.8332 29 6 2.8293 -5.9485 -1.4713 30 1 -0.4850 0.8401 -0.0004 31 1 0.3534 -2.3907 0.0005 32 1 0.5358 -4.8742 -0.8277 33 1 0.7035 -4.9702 0.9418 34 1 1.0426 -7.2427 1.0700 35 1 0.7887 -7.4461 -0.6798 36 1 2.0835 -9.3428 0.2418 37 1 3.3113 -8.2109 0.8601 38 1 1.8706 -7.9539 -2.8170 39 1 0.0140 -9.8004 -3.4544 40 1 1.3194 -9.8374 -4.6638 41 1 0.7256 -12.2741 -2.8960 42 1 2.1818 -11.7292 -5.5833 43 1 2.5916 -12.9737 -4.3247 44 1 0.5259 -14.2206 -4.7549 45 1 0.6359 -13.4486 -6.3959 46 1 -1.2120 -12.5352 -4.3734 47 1 -0.4982 -11.4201 -5.6176 48 1 4.9389 -6.1759 -3.0616 49 1 2.0797 -6.1360 -2.2402 50 1 3.2817 -4.9706 -1.6363 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099755765.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:33 Heat of formation + Delta-G solvation = -102.922487 kcal Electronic energy + Delta-G solvation = -30183.744279 eV Core-core repulsion = 26018.204534 eV Total energy + Delta-G solvation = -4165.539745 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.58214 -39.45426 -38.41144 -37.72129 -36.02929 -34.57051 -33.86070 -31.92650 -31.27760 -30.31598 -29.54199 -27.35685 -25.85370 -24.82592 -23.99509 -23.12771 -22.52173 -20.90945 -19.62241 -19.27773 -19.17834 -17.93195 -17.41086 -17.23752 -16.20139 -16.04998 -15.86767 -15.58015 -15.35410 -15.01680 -14.76393 -14.60287 -14.14852 -14.03812 -13.80433 -13.74491 -13.27122 -13.19711 -12.81299 -12.71229 -12.62822 -12.41419 -12.12685 -11.90051 -11.72329 -11.71082 -11.54818 -11.30356 -11.17979 -11.00917 -10.90801 -10.58399 -10.46014 -10.44129 -10.39613 -10.27409 -10.00573 -9.77468 -9.53278 -9.10181 -8.52121 -8.04486 -7.96000 -6.47309 -3.88368 2.60729 3.09491 3.13336 3.22752 3.28267 3.76677 3.83774 4.08154 4.21829 4.30075 4.36842 4.44726 4.60481 4.68831 4.83911 4.87033 4.99704 5.09027 5.09877 5.18675 5.19394 5.22859 5.24923 5.32617 5.44796 5.47853 5.49350 5.61662 5.64069 5.66414 5.67773 5.74680 5.82306 5.84036 5.91203 5.93277 6.01328 6.08062 6.20523 6.22320 6.26364 6.46225 7.11172 7.22819 7.44696 7.49650 7.62114 8.00243 8.18491 8.55365 9.12253 9.48227 9.99472 10.70249 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020571 B = 0.002111 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.781297 B =13259.358826 C =13617.068885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.442 3.558 11 O -0.579 6.579 12 C 0.047 3.953 13 N -0.510 5.510 14 C 0.054 3.946 15 C -0.123 4.123 16 C 0.154 3.846 17 H 0.092 0.908 18 N -0.716 5.716 19 C 0.515 3.485 20 O -0.544 6.544 21 C -0.133 4.133 22 C -0.093 4.093 23 C -0.135 4.135 24 C -0.143 4.143 25 C -0.139 4.139 26 C 0.103 3.897 27 H 0.081 0.919 28 O -0.566 6.566 29 C 0.026 3.974 30 H 0.272 0.728 31 H 0.392 0.608 32 H 0.046 0.954 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.031 0.969 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.399 0.601 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.099 0.901 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.079 0.921 45 H 0.065 0.935 46 H 0.067 0.933 47 H 0.080 0.920 48 H 0.383 0.617 49 H 0.027 0.973 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.805 -20.232 -8.107 21.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.227 3.773 11 O -0.463 6.463 12 C -0.084 4.084 13 N -0.236 5.236 14 C -0.074 4.074 15 C -0.162 4.162 16 C 0.050 3.950 17 H 0.110 0.890 18 N -0.368 5.368 19 C 0.301 3.699 20 O -0.421 6.421 21 C -0.173 4.173 22 C -0.112 4.112 23 C -0.172 4.172 24 C -0.181 4.181 25 C -0.177 4.177 26 C 0.043 3.957 27 H 0.099 0.901 28 O -0.371 6.371 29 C -0.102 4.102 30 H 0.082 0.918 31 H 0.225 0.775 32 H 0.064 0.936 33 H 0.109 0.891 34 H 0.096 0.904 35 H 0.049 0.951 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.234 0.766 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.117 0.883 42 H 0.096 0.904 43 H 0.087 0.913 44 H 0.097 0.903 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.099 0.901 48 H 0.231 0.769 49 H 0.045 0.955 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.582 -21.275 -7.333 22.511 hybrid contribution -0.985 1.922 -0.758 2.289 sum -1.567 -19.353 -8.091 21.034 Atomic orbital electron populations 1.69612 1.05947 1.28216 1.50438 1.25272 0.95641 0.99763 0.97265 0.85858 0.79266 0.80795 0.78380 1.20420 1.20902 1.19392 1.19687 0.93340 0.82174 1.47703 0.87903 1.41886 1.09207 1.04622 1.64259 1.19727 0.88428 0.84503 0.84646 1.90496 1.13626 1.86937 1.55223 1.21855 0.93594 0.91120 1.01823 1.61412 1.31414 1.01311 1.29436 1.22123 0.95301 0.88882 1.01062 1.21930 0.99258 0.98451 0.96571 1.20990 0.90813 0.96266 0.86979 0.88959 1.46039 1.44097 1.07748 1.38909 1.20663 0.82853 0.82477 0.83874 1.90673 1.53698 1.44681 1.53033 1.21713 0.98951 0.98213 0.98451 1.22324 0.96693 0.93258 0.98914 1.22941 0.96832 0.98959 0.98466 1.22797 0.96934 0.97509 1.00824 1.22990 0.97158 0.98609 0.98893 1.22028 0.94599 0.93388 0.85664 0.90130 1.86459 1.75612 1.40449 1.34586 1.22852 0.96755 1.01579 0.89011 0.91833 0.77507 0.93572 0.89069 0.90383 0.95096 0.90398 0.89689 0.76596 0.88938 0.88920 0.88254 0.90385 0.91279 0.90266 0.91587 0.91471 0.90090 0.76906 0.95493 0.87900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.92 13.05 55.50 0.72 -23.20 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 20.55 29.55 -169.99 -5.02 15.52 16 4 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.30 -8.07 9.68 -14.93 -0.14 -8.22 16 8 H 0.10 2.91 7.16 -52.48 -0.38 2.53 16 9 N -0.56 -13.69 5.29 -10.96 -0.06 -13.75 16 10 C 0.44 9.86 7.31 -10.99 -0.08 9.78 16 11 O -0.58 -14.71 14.28 5.54 0.08 -14.63 16 12 C 0.05 0.79 5.45 -4.98 -0.03 0.76 16 13 N -0.51 -7.76 4.35 -236.12 -1.03 -8.79 16 14 C 0.05 0.66 5.31 -3.84 -0.02 0.64 16 15 C -0.12 -1.44 5.76 -26.65 -0.15 -1.59 16 16 C 0.15 1.89 2.51 -67.81 -0.17 1.72 16 17 H 0.09 1.27 7.58 -51.93 -0.39 0.88 16 18 N -0.72 -7.92 4.17 -53.69 -0.22 -8.14 16 19 C 0.51 5.96 7.80 -10.98 -0.09 5.88 16 20 O -0.54 -8.11 15.42 5.56 0.09 -8.02 16 21 C -0.13 -1.11 5.54 -27.89 -0.15 -1.27 16 22 C -0.09 -0.80 3.15 -89.81 -0.28 -1.09 16 23 C -0.13 -1.15 7.63 -25.92 -0.20 -1.35 16 24 C -0.14 -1.01 8.08 -25.92 -0.21 -1.22 16 25 C -0.14 -0.96 7.64 -25.92 -0.20 -1.15 16 26 C 0.10 1.32 3.36 -26.65 -0.09 1.23 16 27 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 28 O -0.57 -6.91 13.15 -35.23 -0.46 -7.37 16 29 C 0.03 0.38 4.58 -3.84 -0.02 0.36 16 30 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 31 H 0.39 9.15 7.90 -40.82 -0.32 8.83 16 32 H 0.05 0.70 8.12 -51.93 -0.42 0.28 16 33 H 0.09 1.39 7.98 -51.93 -0.41 0.97 16 34 H 0.08 0.90 8.01 -51.93 -0.42 0.48 16 35 H 0.03 0.36 7.69 -51.93 -0.40 -0.04 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.08 1.00 8.14 -51.92 -0.42 0.58 16 38 H 0.40 4.01 7.01 -40.82 -0.29 3.72 16 39 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.09 0.67 7.84 -51.93 -0.41 0.26 16 41 H 0.10 1.01 7.67 -51.93 -0.40 0.61 16 42 H 0.08 0.63 7.90 -51.93 -0.41 0.22 16 43 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.08 0.50 8.10 -51.92 -0.42 0.07 16 48 H 0.38 3.58 9.08 45.56 0.41 4.00 16 49 H 0.03 0.36 6.64 -51.93 -0.34 0.01 16 50 H 0.10 1.81 6.05 -51.93 -0.31 1.50 16 LS Contribution 398.05 15.07 6.00 6.00 Total: -1.00 -31.96 398.05 -9.26 -41.22 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: -7.43 Total: 16.18 kcal Atomic # 6 Polarization: 6.91 SS G_CDS: -1.93 Total: 4.98 kcal Atomic # 7 Polarization: -53.29 SS G_CDS: -0.58 Total: -53.88 kcal Atomic # 8 Polarization: -29.73 SS G_CDS: -0.30 Total: -30.02 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.96 -9.26 -41.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099755765.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.704 kcal (2) G-P(sol) polarization free energy of solvation -31.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds