Wall clock time and date at job start Sat Apr 11 2020 05:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86796 * 120.00238 * 2 1 4 4 H 1.48500 * 109.47099 * 270.00310 * 3 2 1 5 5 H 1.48501 * 109.47101 * 30.00450 * 3 2 1 6 6 H 1.48497 * 109.47019 * 150.00515 * 3 2 1 7 7 C 1.38947 * 119.99737 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00343 * 179.97438 * 7 2 1 9 9 N 1.37104 * 119.99820 * 0.02562 * 7 2 1 10 10 C 1.34774 * 119.99517 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00772 * 359.97438 * 10 9 7 12 12 C 1.50712 * 119.99680 * 179.97438 * 10 9 7 13 13 N 1.46898 * 109.46931 * 179.97438 * 12 10 9 14 14 C 1.46847 * 111.00446 * 293.95732 * 13 12 10 15 15 C 1.53034 * 109.52538 * 174.16346 * 14 13 12 16 16 C 1.53113 * 109.28122 * 59.17756 * 15 14 13 17 17 H 1.08996 * 109.52429 * 182.37755 * 16 15 14 18 18 N 1.46504 * 109.52551 * 62.24743 * 16 15 14 19 19 C 1.34776 * 119.99735 * 84.99915 * 18 16 15 20 20 O 1.21282 * 119.99940 * 0.02562 * 19 18 16 21 21 C 1.50698 * 120.00035 * 179.97438 * 19 18 16 22 22 C 1.53006 * 109.47184 * 180.02562 * 21 19 18 23 23 C 1.53776 * 113.61554 * 272.50074 * 22 21 19 24 24 C 1.53782 * 87.08009 * 220.01694 * 23 22 21 25 25 C 1.53779 * 87.08198 * 25.43282 * 24 23 22 26 26 C 1.53128 * 109.15924 * 302.34744 * 16 15 14 27 27 H 1.09000 * 109.50029 * 297.71159 * 26 16 15 28 28 O 1.42896 * 109.50370 * 177.59551 * 26 16 15 29 29 C 1.46848 * 110.99768 * 169.74357 * 13 12 10 30 30 H 0.97006 * 119.99399 * 359.97438 * 1 2 3 31 31 H 0.96994 * 120.00195 * 359.97438 * 9 7 2 32 32 H 1.08996 * 109.46782 * 60.00062 * 12 10 9 33 33 H 1.08995 * 109.46860 * 300.00016 * 12 10 9 34 34 H 1.09000 * 109.46362 * 54.13857 * 14 13 12 35 35 H 1.09004 * 109.46181 * 294.17765 * 14 13 12 36 36 H 1.08995 * 109.50114 * 299.23316 * 15 14 13 37 37 H 1.09004 * 109.50283 * 179.11831 * 15 14 13 38 38 H 0.96998 * 120.00303 * 265.00088 * 18 16 15 39 39 H 1.09001 * 109.46665 * 60.00498 * 21 19 18 40 40 H 1.08993 * 109.47304 * 300.00054 * 21 19 18 41 41 H 1.09003 * 112.84427 * 43.80687 * 22 21 19 42 42 H 1.09004 * 113.61654 * 334.57123 * 23 22 21 43 43 H 1.09005 * 113.61592 * 105.46636 * 23 22 21 44 44 H 1.08995 * 113.61557 * 270.88449 * 24 23 22 45 45 H 1.09003 * 113.60762 * 139.98385 * 24 23 22 46 46 H 1.08996 * 113.61570 * 220.01797 * 25 24 23 47 47 H 1.09000 * 113.61317 * 89.10796 * 25 24 23 48 48 H 0.96699 * 113.99999 * 180.02562 * 28 26 16 49 49 H 1.09001 * 109.46504 * 305.85845 * 29 13 12 50 50 H 1.09007 * 109.46045 * 65.82669 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4457 2.6526 0.7001 6 1 3.5457 1.4400 0.6999 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3232 -2.3906 -0.0016 10 6 1.9971 -3.5578 -0.0016 11 8 3.2100 -3.5580 -0.0011 12 6 1.2435 -4.8630 -0.0022 13 7 2.1980 -5.9795 -0.0027 14 6 2.9632 -6.0173 -1.2555 15 6 4.0433 -7.0975 -1.1628 16 6 3.3810 -8.4540 -0.9063 17 1 4.1492 -9.2196 -0.7975 18 7 2.5076 -8.7932 -2.0325 19 6 3.0192 -9.3954 -3.1244 20 8 4.2025 -9.6568 -3.1744 21 6 2.1208 -9.7449 -4.2827 22 6 2.9454 -10.4148 -5.3837 23 6 3.5812 -9.4199 -6.3689 24 6 3.2239 -10.4168 -7.4840 25 6 2.1002 -10.9224 -6.5640 26 6 2.5514 -8.3734 0.3783 27 1 3.2073 -8.1594 1.2221 28 8 1.8851 -9.6188 0.5948 29 6 1.5146 -7.2563 0.2409 30 1 -0.4849 0.8402 0.0004 31 1 0.3533 -2.3906 -0.0016 32 1 0.6172 -4.9204 -0.8924 33 1 0.6165 -4.9208 0.8875 34 1 3.4323 -5.0480 -1.4239 35 1 2.2924 -6.2447 -2.0840 36 1 4.7226 -6.8634 -0.3432 37 1 4.6008 -7.1359 -2.0986 38 1 1.5612 -8.5845 -1.9924 39 1 1.6620 -8.8366 -4.6735 40 1 1.3423 -10.4290 -3.9452 41 1 3.6449 -11.1559 -4.9970 42 1 3.0451 -8.4735 -6.4409 43 1 4.6541 -9.2898 -6.2267 44 1 4.0006 -11.1579 -7.6725 45 1 2.8614 -9.9410 -8.3952 46 1 1.9774 -12.0053 -6.5793 47 1 1.1592 -10.3868 -6.6892 48 1 1.3396 -9.6394 1.3930 49 1 0.9317 -7.1868 1.1593 50 1 0.8505 -7.4779 -0.5947 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099755766.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:35 Heat of formation + Delta-G solvation = -101.512059 kcal Electronic energy + Delta-G solvation = -30244.925683 eV Core-core repulsion = 26079.447099 eV Total energy + Delta-G solvation = -4165.478584 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.57745 -39.44208 -38.39227 -37.78766 -36.06859 -34.57658 -33.84645 -31.94072 -31.24648 -30.25035 -29.61735 -27.32696 -25.81362 -24.79361 -23.96214 -23.09782 -22.58727 -20.91642 -19.58847 -19.31305 -19.13807 -17.94020 -17.42781 -17.32078 -16.27807 -16.10880 -15.75339 -15.41270 -15.36585 -14.99637 -14.73534 -14.56422 -14.12607 -14.04254 -13.99986 -13.71513 -13.36222 -13.15623 -12.72876 -12.67605 -12.63807 -12.43262 -12.15810 -12.08102 -11.68028 -11.57712 -11.40415 -11.29549 -11.13499 -10.87560 -10.79975 -10.55623 -10.49625 -10.41416 -10.39962 -10.26728 -10.15927 -9.76766 -9.51275 -9.07874 -8.48878 -8.02967 -7.93266 -6.45383 -3.86187 2.63969 3.10201 3.15275 3.24401 3.30121 3.68933 3.85574 4.06135 4.21817 4.32518 4.40597 4.48184 4.62538 4.65376 4.74574 4.83365 4.96746 5.05354 5.12431 5.21071 5.23383 5.26166 5.33032 5.36535 5.44974 5.48676 5.52926 5.58398 5.64692 5.65696 5.70262 5.75941 5.78602 5.87848 5.90616 5.97338 6.05196 6.20542 6.26745 6.30551 6.44792 6.49961 7.15470 7.21783 7.45534 7.45591 7.52039 8.02522 8.21120 8.57569 9.14516 9.50189 10.01672 10.72290 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012830 B = 0.002413 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.888583 B =11602.052676 C =12925.644104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.298 4.298 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.443 3.557 11 O -0.576 6.576 12 C 0.047 3.953 13 N -0.510 5.510 14 C 0.053 3.947 15 C -0.122 4.122 16 C 0.155 3.845 17 H 0.092 0.908 18 N -0.717 5.717 19 C 0.515 3.485 20 O -0.542 6.542 21 C -0.133 4.133 22 C -0.093 4.093 23 C -0.135 4.135 24 C -0.143 4.143 25 C -0.139 4.139 26 C 0.101 3.899 27 H 0.081 0.919 28 O -0.563 6.563 29 C 0.024 3.976 30 H 0.271 0.729 31 H 0.392 0.608 32 H 0.047 0.953 33 H 0.089 0.911 34 H 0.107 0.893 35 H 0.023 0.977 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.398 0.602 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.099 0.901 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.079 0.921 45 H 0.066 0.934 46 H 0.066 0.934 47 H 0.080 0.920 48 H 0.379 0.621 49 H 0.079 0.921 50 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.009 -20.850 -6.717 21.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.228 3.772 11 O -0.460 6.460 12 C -0.084 4.084 13 N -0.236 5.236 14 C -0.074 4.074 15 C -0.160 4.160 16 C 0.050 3.950 17 H 0.110 0.890 18 N -0.368 5.368 19 C 0.301 3.699 20 O -0.419 6.419 21 C -0.173 4.173 22 C -0.112 4.112 23 C -0.172 4.172 24 C -0.181 4.181 25 C -0.176 4.176 26 C 0.041 3.959 27 H 0.099 0.901 28 O -0.368 6.368 29 C -0.105 4.105 30 H 0.081 0.919 31 H 0.225 0.775 32 H 0.065 0.935 33 H 0.107 0.893 34 H 0.125 0.875 35 H 0.041 0.959 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.232 0.768 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.117 0.883 42 H 0.097 0.903 43 H 0.088 0.912 44 H 0.097 0.903 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.099 0.901 48 H 0.226 0.774 49 H 0.097 0.903 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 0.177 -20.961 -6.913 22.072 hybrid contribution -1.787 1.122 0.026 2.110 sum -1.610 -19.838 -6.886 21.061 Atomic orbital electron populations 1.69613 1.05945 1.28179 1.50592 1.25261 0.95637 0.99743 0.97298 0.85860 0.79271 0.80795 0.78398 1.20415 1.20918 1.19380 1.19694 0.93361 0.82163 1.47578 0.87886 1.41866 1.09176 1.04599 1.64376 1.19696 0.88421 0.84491 0.84596 1.90495 1.13626 1.86821 1.55058 1.21842 0.93836 0.91195 1.01502 1.61457 1.25069 1.00790 1.36276 1.22260 0.95099 1.01643 0.88402 1.21923 0.98303 0.92423 1.03393 1.21011 0.92413 0.97892 0.83687 0.88998 1.46005 1.12257 1.61450 1.17133 1.20659 0.89015 0.76741 0.83465 1.90682 1.16627 1.53667 1.80889 1.21709 0.98692 1.02385 0.94487 1.22327 0.97627 0.98778 0.92472 1.22949 1.01546 0.97227 0.95515 1.22796 0.98704 0.99298 0.97263 1.22987 0.97727 1.00803 0.96098 1.22060 0.93375 0.82787 0.97629 0.90129 1.86541 1.66804 1.34277 1.49133 1.22796 0.95907 0.90541 1.01231 0.91864 0.77524 0.93486 0.89327 0.87503 0.95909 0.89659 0.90476 0.76774 0.88976 0.88939 0.88277 0.90318 0.91207 0.90280 0.91557 0.91529 0.90111 0.77400 0.90287 0.94789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.12 13.05 55.50 0.72 -23.40 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 20.79 29.55 -169.99 -5.02 15.77 16 4 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 7 C -0.30 -8.14 9.68 -14.93 -0.14 -8.29 16 8 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 9 N -0.56 -13.86 5.29 -10.96 -0.06 -13.91 16 10 C 0.44 10.02 7.46 -10.98 -0.08 9.94 16 11 O -0.58 -14.94 13.92 5.55 0.08 -14.87 16 12 C 0.05 0.79 5.45 -4.97 -0.03 0.76 16 13 N -0.51 -7.77 4.39 -236.11 -1.04 -8.80 16 14 C 0.05 0.83 4.96 -3.84 -0.02 0.81 16 15 C -0.12 -1.69 5.76 -26.66 -0.15 -1.85 16 16 C 0.15 1.90 2.51 -67.80 -0.17 1.73 16 17 H 0.09 1.26 7.58 -51.93 -0.39 0.87 16 18 N -0.72 -7.95 4.17 -53.68 -0.22 -8.17 16 19 C 0.51 6.19 7.80 -10.99 -0.09 6.11 16 20 O -0.54 -8.45 15.42 5.56 0.09 -8.36 16 21 C -0.13 -1.15 5.54 -27.88 -0.15 -1.31 16 22 C -0.09 -0.85 3.15 -89.81 -0.28 -1.13 16 23 C -0.13 -1.25 7.63 -25.92 -0.20 -1.45 16 24 C -0.14 -1.10 8.08 -25.92 -0.21 -1.31 16 25 C -0.14 -1.00 7.64 -25.92 -0.20 -1.20 16 26 C 0.10 1.09 3.36 -26.65 -0.09 1.00 16 27 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 28 O -0.56 -5.34 13.14 -35.23 -0.46 -5.81 16 29 C 0.02 0.27 4.93 -3.83 -0.02 0.25 16 30 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 31 H 0.39 9.20 7.90 -40.82 -0.32 8.88 16 32 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 33 H 0.09 1.32 7.98 -51.93 -0.41 0.90 16 34 H 0.11 2.09 5.80 -51.93 -0.30 1.78 16 35 H 0.02 0.33 7.69 -51.93 -0.40 -0.07 16 36 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.40 3.79 7.01 -40.82 -0.29 3.50 16 39 H 0.09 0.70 7.84 -51.93 -0.41 0.29 16 40 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.10 1.06 7.67 -51.93 -0.40 0.66 16 42 H 0.08 0.71 7.90 -51.93 -0.41 0.30 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.08 0.52 8.10 -51.93 -0.42 0.10 16 48 H 0.38 2.05 9.08 45.56 0.41 2.46 16 49 H 0.08 0.78 8.01 -51.93 -0.42 0.36 16 50 H 0.03 0.35 6.64 -51.93 -0.34 0.01 16 LS Contribution 397.64 15.07 5.99 5.99 Total: -1.00 -32.71 397.64 -9.27 -41.98 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: -7.42 Total: 15.02 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: -1.93 Total: 4.56 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: -0.59 Total: -54.29 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -0.30 Total: -29.03 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.71 -9.27 -41.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099755766.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.530 kcal (2) G-P(sol) polarization free energy of solvation -32.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds