Wall clock time and date at job start Sat Apr 11 2020 05:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99563 * 2 1 4 4 H 1.48501 * 109.46526 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47326 * 299.99608 * 3 2 1 6 6 H 1.48492 * 109.47202 * 59.99920 * 3 2 1 7 7 C 1.38810 * 120.00297 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00088 * 197.38255 * 7 2 1 9 9 N 1.36943 * 119.99976 * 17.37670 * 7 2 1 10 10 C 1.46926 * 120.62631 * 27.66165 * 9 7 2 11 11 C 1.53192 * 108.77678 * 126.41250 * 10 9 7 12 12 C 1.53047 * 109.31079 * 54.63170 * 11 10 9 13 13 H 1.09001 * 109.45524 * 178.61887 * 12 11 10 14 14 N 1.46499 * 109.45907 * 58.65750 * 12 11 10 15 15 C 1.34774 * 119.99852 * 84.93273 * 14 12 11 16 16 O 1.21281 * 120.00095 * 359.97438 * 15 14 12 17 17 C 1.50703 * 119.99753 * 179.97438 * 15 14 12 18 18 N 1.46499 * 109.47086 * 179.97438 * 17 15 14 19 19 C 1.34777 * 120.00327 * 180.02562 * 18 17 15 20 20 O 1.21283 * 119.99782 * 0.02562 * 19 18 17 21 21 C 1.50699 * 120.00230 * 179.97438 * 19 18 17 22 22 C 1.54266 * 110.03040 * 297.90771 * 21 19 18 23 23 C 1.54971 * 104.15865 * 217.13425 * 22 21 19 24 24 C 1.54890 * 102.77540 * 37.89082 * 23 22 21 25 25 C 1.53870 * 110.03150 * 180.68723 * 21 19 18 26 26 C 1.53039 * 109.53871 * 298.63789 * 12 11 10 27 27 H 1.09006 * 109.52367 * 301.39666 * 26 12 11 28 28 O 1.42897 * 109.49818 * 181.31892 * 26 12 11 29 29 C 1.46925 * 120.63289 * 207.68161 * 9 7 2 30 30 H 0.96998 * 120.00601 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.58363 * 246.19783 * 10 9 7 32 32 H 1.08997 * 109.59292 * 6.62235 * 10 9 7 33 33 H 1.08992 * 109.49950 * 174.58303 * 11 10 9 34 34 H 1.09000 * 109.49716 * 294.65360 * 11 10 9 35 35 H 0.97004 * 119.99698 * 264.92998 * 14 12 11 36 36 H 1.08995 * 109.47755 * 300.00155 * 17 15 14 37 37 H 1.09010 * 109.46910 * 60.00576 * 17 15 14 38 38 H 0.97004 * 120.00170 * 0.02562 * 18 17 15 39 39 H 1.08997 * 110.01592 * 59.29732 * 21 19 18 40 40 H 1.08994 * 110.49038 * 335.78334 * 22 21 19 41 41 H 1.09004 * 110.48642 * 98.43041 * 22 21 19 42 42 H 1.09001 * 110.71834 * 279.58133 * 23 22 21 43 43 H 1.08994 * 110.92281 * 156.29729 * 23 22 21 44 44 H 1.09000 * 110.48798 * 203.40775 * 24 23 22 45 45 H 1.08999 * 110.59965 * 80.81635 * 24 23 22 46 46 H 1.08994 * 110.03626 * 238.56676 * 25 21 19 47 47 H 1.09003 * 110.03393 * 359.95888 * 25 21 19 48 48 H 0.96699 * 113.99903 * 180.16056 * 28 26 12 49 49 H 1.08997 * 109.58240 * 113.79907 * 29 9 7 50 50 H 1.08997 * 109.58559 * 353.37470 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0533 -1.2233 0.2800 9 7 1.3725 -2.3612 -0.3531 10 6 0.2281 -2.3347 -1.2741 11 6 0.5010 -3.3050 -2.4278 12 6 0.8189 -4.6901 -1.8597 13 1 0.9894 -5.3882 -2.6793 14 7 -0.3090 -5.1557 -1.0489 15 6 -1.3507 -5.7766 -1.6369 16 8 -1.3546 -5.9494 -2.8373 17 6 -2.5106 -6.2560 -0.8027 18 7 -3.5057 -6.8918 -1.6697 19 6 -4.6363 -7.3986 -1.1391 20 8 -4.8300 -7.3278 0.0560 21 6 -5.6602 -8.0522 -2.0310 22 6 -6.2099 -7.0268 -3.0441 23 6 -7.7104 -7.3909 -3.1757 24 6 -8.0968 -7.7798 -1.7270 25 6 -6.8592 -8.5311 -1.1941 26 6 2.0745 -4.6101 -0.9884 27 1 2.9088 -4.2405 -1.5847 28 8 2.3881 -5.9096 -0.4834 29 6 1.8194 -3.6547 0.1815 30 1 -0.4851 0.8400 -0.0004 31 1 -0.6741 -2.6411 -0.7447 32 1 0.0987 -1.3265 -1.6675 33 1 -0.3797 -3.3673 -3.0669 34 1 1.3493 -2.9471 -3.0111 35 1 -0.3059 -5.0171 -0.0888 36 1 -2.1554 -6.9773 -0.0668 37 1 -2.9647 -5.4078 -0.2903 38 1 -3.3510 -6.9481 -2.6256 39 1 -5.2124 -8.8946 -2.5581 40 1 -6.0957 -6.0129 -2.6608 41 1 -5.7055 -7.1316 -4.0047 42 1 -7.8445 -8.2358 -3.8511 43 1 -8.2911 -6.5325 -3.5131 44 1 -8.9691 -8.4334 -1.7272 45 1 -8.2890 -6.8889 -1.1291 46 1 -6.9940 -9.6058 -1.3157 47 1 -6.7003 -8.2915 -0.1427 48 1 3.1733 -5.9334 0.0806 49 1 1.0470 -4.0686 0.8296 50 1 2.7401 -3.5173 0.7485 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099847450.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:46 Heat of formation + Delta-G solvation = -114.277634 kcal Electronic energy + Delta-G solvation = -30368.704184 eV Core-core repulsion = 26202.672043 eV Total energy + Delta-G solvation = -4166.032141 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.49139 -39.76555 -38.10487 -37.19142 -35.51158 -34.58409 -34.09573 -31.88933 -30.52894 -29.86320 -28.91671 -28.73815 -27.16835 -25.28442 -22.52671 -22.19414 -21.85048 -20.98295 -20.72860 -19.81329 -18.83046 -17.99180 -17.21560 -16.77115 -16.39919 -16.32626 -15.89498 -15.60925 -15.24756 -14.97645 -14.68302 -14.51671 -14.29198 -13.92298 -13.71486 -13.51059 -13.43044 -13.15957 -12.87157 -12.58947 -12.24144 -12.06112 -11.92139 -11.73564 -11.59025 -11.36556 -11.34717 -11.24130 -11.03261 -10.94663 -10.75707 -10.74940 -10.41898 -10.27538 -10.01684 -9.93734 -9.90514 -9.71665 -9.49815 -9.24720 -8.75059 -8.57379 -6.83877 -5.92017 -3.36290 2.51931 2.73104 2.83318 3.29682 3.38131 3.39624 3.54612 4.21452 4.30410 4.33336 4.45453 4.50007 4.78941 4.96109 5.09506 5.19030 5.22236 5.22619 5.23933 5.30383 5.36158 5.38948 5.40058 5.40988 5.50648 5.59141 5.63085 5.67845 5.83569 5.87578 5.90006 5.97658 6.04550 6.09868 6.16547 6.26485 6.38197 6.45278 6.57480 6.60927 6.80726 7.20203 7.40367 7.52188 7.67003 7.68059 7.85065 8.11166 8.30075 8.32612 9.05939 9.68223 10.22996 11.16113 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015122 B = 0.002443 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.144405 B =11458.170219 C =12466.245476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.006 3.994 3 Si 0.904 3.096 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.260 4.260 8 H 0.067 0.933 9 N -0.587 5.587 10 C 0.171 3.829 11 C -0.153 4.153 12 C 0.167 3.833 13 H 0.080 0.920 14 N -0.697 5.697 15 C 0.511 3.489 16 O -0.551 6.551 17 C 0.098 3.902 18 N -0.715 5.715 19 C 0.520 3.480 20 O -0.541 6.541 21 C -0.111 4.111 22 C -0.117 4.117 23 C -0.124 4.124 24 C -0.125 4.125 25 C -0.119 4.119 26 C 0.075 3.925 27 H 0.067 0.933 28 O -0.571 6.571 29 C 0.118 3.882 30 H 0.255 0.745 31 H 0.021 0.979 32 H 0.090 0.910 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.405 0.595 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.412 0.588 39 H 0.099 0.901 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.066 0.934 45 H 0.067 0.933 46 H 0.066 0.934 47 H 0.090 0.910 48 H 0.375 0.625 49 H 0.023 0.977 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.668 -15.644 -4.986 18.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.194 4.194 3 Si 0.733 3.267 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.216 1.216 7 C -0.389 4.389 8 H 0.085 0.915 9 N -0.311 5.311 10 C 0.046 3.954 11 C -0.193 4.193 12 C 0.062 3.938 13 H 0.098 0.902 14 N -0.348 5.348 15 C 0.296 3.704 16 O -0.430 6.430 17 C -0.029 4.029 18 N -0.369 5.369 19 C 0.306 3.694 20 O -0.418 6.418 21 C -0.133 4.133 22 C -0.155 4.155 23 C -0.161 4.161 24 C -0.162 4.162 25 C -0.157 4.157 26 C 0.014 3.986 27 H 0.085 0.915 28 O -0.376 6.376 29 C -0.010 4.010 30 H 0.065 0.935 31 H 0.039 0.961 32 H 0.108 0.892 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.241 0.759 36 H 0.115 0.885 37 H 0.118 0.882 38 H 0.249 0.751 39 H 0.117 0.883 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.085 0.915 47 H 0.109 0.891 48 H 0.221 0.779 49 H 0.041 0.959 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.400 -15.710 -5.305 19.061 hybrid contribution 1.143 1.180 0.380 1.686 sum -8.257 -14.530 -4.926 17.423 Atomic orbital electron populations 1.70034 1.05294 1.25679 1.53185 1.25057 0.95303 0.98548 1.00444 0.86213 0.79343 0.83748 0.77368 1.20214 1.21441 1.21642 1.19191 0.92747 0.84610 1.42333 0.91496 1.44025 1.35943 1.00905 1.50239 1.20802 0.88476 0.98464 0.87691 1.22596 1.01569 0.94693 1.00486 1.20868 0.83601 0.96486 0.92827 0.90226 1.45850 1.19284 1.57711 1.11970 1.20340 0.83735 0.77853 0.88466 1.90651 1.79642 1.57884 1.14789 1.21079 0.88754 0.99801 0.93301 1.45706 1.19235 1.59669 1.12322 1.20612 0.81827 0.78011 0.88945 1.90679 1.77298 1.57989 1.15853 1.21934 0.95440 0.99237 0.96651 1.22396 0.96244 0.98615 0.98229 1.22510 0.95289 1.01247 0.97067 1.22371 0.97529 1.00341 0.95987 1.22172 0.92341 0.99690 1.01486 1.22750 0.96091 0.83023 0.96701 0.91483 1.86471 1.50773 1.30217 1.70123 1.21545 0.98575 0.87719 0.93150 0.93499 0.96062 0.89153 0.91838 0.91373 0.75869 0.88489 0.88218 0.75050 0.88302 0.90917 0.90646 0.91284 0.91264 0.91567 0.91445 0.91474 0.89129 0.77871 0.95925 0.92185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.95 11.19 55.49 0.62 -24.33 16 2 C 0.01 0.15 4.91 -17.43 -0.09 0.07 16 3 Si 0.90 20.84 29.59 -169.99 -5.03 15.81 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.26 -6.67 9.59 -15.06 -0.14 -6.81 16 8 H 0.07 1.69 7.89 -52.49 -0.41 1.27 16 9 N -0.59 -13.45 3.00 -172.33 -0.52 -13.97 16 10 C 0.17 3.82 5.05 -3.71 -0.02 3.80 16 11 C -0.15 -2.85 5.77 -26.61 -0.15 -3.00 16 12 C 0.17 2.80 2.47 -67.89 -0.17 2.64 16 13 H 0.08 1.40 7.58 -51.93 -0.39 1.00 16 14 N -0.70 -10.85 4.15 -53.76 -0.22 -11.08 16 15 C 0.51 7.75 7.86 -10.99 -0.09 7.67 16 16 O -0.55 -9.58 15.33 5.56 0.09 -9.49 16 17 C 0.10 1.27 6.15 -5.19 -0.03 1.24 16 18 N -0.71 -8.66 5.46 -61.47 -0.34 -9.00 16 19 C 0.52 6.45 7.00 -10.99 -0.08 6.38 16 20 O -0.54 -8.52 15.21 5.55 0.08 -8.43 16 21 C -0.11 -1.02 3.29 -90.66 -0.30 -1.32 16 22 C -0.12 -0.96 6.30 -25.03 -0.16 -1.12 16 23 C -0.12 -0.88 6.91 -24.69 -0.17 -1.05 16 24 C -0.12 -0.98 6.83 -25.07 -0.17 -1.15 16 25 C -0.12 -1.08 6.40 -25.61 -0.16 -1.24 16 26 C 0.08 1.20 3.36 -26.61 -0.09 1.12 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 28 O -0.57 -8.06 13.21 -35.23 -0.47 -8.52 16 29 C 0.12 2.17 5.84 -3.71 -0.02 2.15 16 30 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 31 H 0.02 0.50 7.74 -51.93 -0.40 0.10 16 32 H 0.09 2.31 6.04 -51.93 -0.31 2.00 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.41 6.10 6.87 -40.82 -0.28 5.82 16 36 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.10 1.31 8.14 -51.92 -0.42 0.88 16 38 H 0.41 4.72 7.42 -40.82 -0.30 4.42 16 39 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.69 7.85 -51.93 -0.41 0.28 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.09 1.03 6.39 -51.93 -0.33 0.69 16 48 H 0.37 3.74 9.08 45.56 0.41 4.16 16 49 H 0.02 0.42 6.64 -51.93 -0.34 0.08 16 50 H 0.06 1.07 7.93 -51.93 -0.41 0.66 16 LS Contribution 393.63 15.07 5.93 5.93 Total: -1.00 -31.49 393.63 -9.08 -40.57 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: -7.40 Total: 13.14 kcal Atomic # 6 Polarization: 11.20 SS G_CDS: -1.84 Total: 9.36 kcal Atomic # 7 Polarization: -57.91 SS G_CDS: -0.45 Total: -58.37 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.30 Total: -26.44 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.03 Total: 15.81 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.49 -9.08 -40.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099847450.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.703 kcal (2) G-P(sol) polarization free energy of solvation -31.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds