Wall clock time and date at job start Sat Apr 11 2020 05:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99684 * 2 1 4 4 H 1.48504 * 109.47275 * 269.99690 * 3 2 1 5 5 H 1.48498 * 109.47444 * 29.99594 * 3 2 1 6 6 H 1.48498 * 109.47288 * 150.00065 * 3 2 1 7 7 C 1.38808 * 120.00083 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00345 * 163.08307 * 7 2 1 9 9 N 1.36936 * 120.00060 * 343.07635 * 7 2 1 10 10 C 1.46929 * 120.63155 * 331.83648 * 9 7 2 11 11 C 1.53191 * 108.77352 * 233.58522 * 10 9 7 12 12 C 1.53036 * 109.31170 * 305.36254 * 11 10 9 13 13 H 1.09001 * 109.46510 * 301.35821 * 12 11 10 14 14 N 1.46505 * 109.45973 * 181.38735 * 12 11 10 15 15 C 1.34776 * 119.99658 * 85.00023 * 14 12 11 16 16 O 1.21278 * 120.00558 * 0.02562 * 15 14 12 17 17 C 1.50706 * 119.99745 * 180.02562 * 15 14 12 18 18 C 1.52998 * 109.47235 * 180.02562 * 17 15 14 19 19 N 1.46503 * 109.47365 * 180.02562 * 18 17 15 20 20 C 1.34776 * 119.99875 * 179.97438 * 19 18 17 21 21 O 1.21275 * 120.00121 * 359.97438 * 20 19 18 22 22 C 1.50699 * 119.99482 * 180.02562 * 20 19 18 23 23 C 1.53786 * 113.61250 * 277.49408 * 22 20 19 24 24 C 1.53781 * 87.08278 * 220.02043 * 23 22 20 25 25 C 1.53786 * 113.61069 * 180.02562 * 22 20 19 26 26 C 1.53040 * 109.53818 * 61.36979 * 12 11 10 27 27 H 1.08995 * 109.49767 * 58.58749 * 26 12 11 28 28 O 1.42898 * 109.49774 * 178.67761 * 26 12 11 29 29 C 1.46929 * 120.63176 * 151.81295 * 9 7 2 30 30 H 0.96997 * 120.00351 * 0.02562 * 1 2 3 31 31 H 1.08996 * 109.58327 * 113.79812 * 10 9 7 32 32 H 1.08998 * 109.58399 * 353.37622 * 10 9 7 33 33 H 1.09007 * 109.49248 * 185.41689 * 11 10 9 34 34 H 1.08991 * 109.50097 * 65.31965 * 11 10 9 35 35 H 0.96998 * 120.00353 * 265.00236 * 14 12 11 36 36 H 1.09000 * 109.47431 * 59.99970 * 17 15 14 37 37 H 1.08997 * 109.47008 * 300.00163 * 17 15 14 38 38 H 1.09007 * 109.47056 * 299.99835 * 18 17 15 39 39 H 1.09000 * 109.47195 * 59.99508 * 18 17 15 40 40 H 0.97000 * 119.99590 * 359.97438 * 19 18 17 41 41 H 1.08995 * 112.85697 * 48.80419 * 22 20 19 42 42 H 1.09001 * 113.61408 * 334.57233 * 23 22 20 43 43 H 1.09003 * 113.61232 * 105.47802 * 23 22 20 44 44 H 1.09000 * 113.61840 * 270.88616 * 24 23 22 45 45 H 1.09000 * 113.68927 * 139.98662 * 24 23 22 46 46 H 1.08996 * 113.61292 * 254.52435 * 25 22 20 47 47 H 1.08997 * 113.61643 * 25.34608 * 25 22 20 48 48 H 0.96701 * 114.00150 * 179.97438 * 28 26 12 49 49 H 1.08996 * 109.58627 * 246.20221 * 29 9 7 50 50 H 1.09006 * 109.58201 * 6.48388 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2225 -0.2716 9 7 1.3701 -2.3622 0.3463 10 6 0.2262 -2.3399 1.2681 11 6 0.4977 -3.3191 2.4145 12 6 0.8120 -4.7007 1.8363 13 1 -0.0281 -5.0408 1.2308 14 7 1.0397 -5.6476 2.9308 15 6 -0.0051 -6.2706 3.5110 16 8 -1.1336 -6.0478 3.1269 17 6 0.2291 -7.2442 4.6373 18 6 -1.1122 -7.8061 5.1128 19 7 -0.8846 -8.7521 6.2081 20 6 -1.9294 -9.3750 6.7885 21 8 -3.0579 -9.1521 6.4044 22 6 -1.6953 -10.3477 7.9155 23 6 -1.3094 -11.7588 7.4412 24 6 -2.2129 -12.2976 8.5629 25 6 -2.9872 -10.9727 8.4680 26 6 2.0674 -4.6173 0.9649 27 1 2.9024 -4.2536 1.5637 28 8 2.3778 -5.9137 0.4503 29 6 1.8137 -3.6529 -0.1979 30 1 -0.4850 0.8400 -0.0004 31 1 -0.6769 -2.6404 0.7370 32 1 0.0994 -1.3342 1.6687 33 1 -0.3830 -3.3840 3.0537 34 1 1.3474 -2.9676 2.9996 35 1 1.9423 -5.8261 3.2378 36 1 0.7224 -6.7323 5.4635 37 1 0.8607 -8.0603 4.2866 38 1 -1.7442 -6.9901 5.4635 39 1 -1.6051 -8.3181 4.2865 40 1 0.0180 -8.9301 6.5155 41 1 -1.0372 -9.9501 8.6880 42 1 -1.6681 -11.9961 6.4396 43 1 -0.2539 -11.9927 7.5804 44 1 -1.6956 -12.4343 9.5126 45 1 -2.8005 -13.1683 8.2718 46 1 -3.2867 -10.5720 9.4364 47 1 -3.8049 -10.9940 7.7476 48 1 3.1638 -5.9357 -0.1126 49 1 1.0400 -4.0604 -0.8486 50 1 2.7331 -3.5130 -0.7667 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100032483.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:01 Heat of formation + Delta-G solvation = -90.214760 kcal Electronic energy + Delta-G solvation = -29347.484970 eV Core-core repulsion = 25182.496274 eV Total energy + Delta-G solvation = -4164.988697 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.56981 -39.83618 -38.15546 -37.71812 -35.45385 -35.31701 -34.32594 -32.11702 -31.26443 -29.89061 -28.57990 -27.23244 -26.04446 -25.28505 -23.72581 -22.38909 -21.75923 -21.27440 -20.27439 -19.76456 -19.38557 -17.82584 -17.29624 -16.93440 -16.60920 -16.22236 -15.88745 -15.82693 -15.67841 -14.86768 -14.77938 -14.49546 -14.04931 -13.88492 -13.62717 -13.50151 -13.22512 -13.11512 -12.87126 -12.77495 -12.46107 -12.29350 -12.11308 -12.08370 -11.65901 -11.60059 -11.55492 -11.13372 -10.97175 -10.89000 -10.82961 -10.70240 -10.35706 -10.30662 -10.02186 -9.96087 -9.83578 -9.74214 -9.44001 -9.31508 -8.78360 -8.47977 -6.79015 -5.87112 -3.31822 2.38845 2.76554 2.77652 3.32297 3.39793 3.41234 3.47114 4.07855 4.15909 4.29794 4.34143 4.38338 4.48512 4.50565 4.80636 4.83944 4.89208 5.11218 5.21303 5.23692 5.27069 5.31109 5.35647 5.44534 5.45640 5.52025 5.55692 5.66171 5.69084 5.74526 5.84571 5.93892 5.98953 6.08554 6.16992 6.28683 6.45304 6.49759 6.63959 6.74686 6.83195 7.21939 7.26547 7.58257 7.68544 7.70474 7.87598 7.99510 8.35442 8.39313 9.10784 9.73167 10.29198 11.21475 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026345 B = 0.001794 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.550102 B =15607.818356 C =16192.307870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.006 3.994 3 Si 0.904 3.096 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.261 4.261 8 H 0.066 0.934 9 N -0.588 5.588 10 C 0.171 3.829 11 C -0.146 4.146 12 C 0.162 3.838 13 H 0.088 0.912 14 N -0.715 5.715 15 C 0.514 3.486 16 O -0.537 6.537 17 C -0.152 4.152 18 C 0.133 3.867 19 N -0.732 5.732 20 C 0.520 3.480 21 O -0.535 6.535 22 C -0.140 4.140 23 C -0.124 4.124 24 C -0.143 4.143 25 C -0.119 4.119 26 C 0.080 3.920 27 H 0.056 0.944 28 O -0.572 6.572 29 C 0.120 3.880 30 H 0.256 0.744 31 H 0.024 0.976 32 H 0.093 0.907 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.396 0.604 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.399 0.601 41 H 0.113 0.887 42 H 0.085 0.915 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.072 0.928 46 H 0.071 0.929 47 H 0.095 0.905 48 H 0.374 0.626 49 H 0.029 0.971 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.593 -21.925 16.190 27.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.194 4.194 3 Si 0.733 3.267 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.390 4.390 8 H 0.084 0.916 9 N -0.312 5.312 10 C 0.045 3.955 11 C -0.187 4.187 12 C 0.058 3.942 13 H 0.106 0.894 14 N -0.365 5.365 15 C 0.299 3.701 16 O -0.414 6.414 17 C -0.193 4.193 18 C 0.009 3.991 19 N -0.383 5.383 20 C 0.306 3.694 21 O -0.410 6.410 22 C -0.161 4.161 23 C -0.162 4.162 24 C -0.180 4.180 25 C -0.157 4.157 26 C 0.019 3.981 27 H 0.074 0.926 28 O -0.376 6.376 29 C -0.007 4.007 30 H 0.066 0.934 31 H 0.042 0.958 32 H 0.111 0.889 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.229 0.771 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.233 0.767 41 H 0.131 0.869 42 H 0.104 0.896 43 H 0.094 0.906 44 H 0.101 0.899 45 H 0.091 0.909 46 H 0.090 0.910 47 H 0.114 0.886 48 H 0.220 0.780 49 H 0.047 0.953 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.289 -21.589 15.939 26.932 hybrid contribution 1.991 1.015 -0.088 2.237 sum 4.280 -20.573 15.851 26.322 Atomic orbital electron populations 1.70030 1.05312 1.25806 1.53031 1.25085 0.95295 0.98557 1.00424 0.86285 0.79110 0.83488 0.77778 1.21287 1.21456 1.20454 1.19136 0.92523 0.84604 1.42781 0.91583 1.44036 1.35916 1.01154 1.50055 1.20834 0.88741 0.98276 0.87692 1.22598 1.00983 0.94333 1.00745 1.21015 0.97559 0.89156 0.86444 0.89409 1.46077 1.09098 1.44483 1.36829 1.20207 0.85265 0.81209 0.83423 1.90758 1.22600 1.64220 1.63840 1.21800 0.99318 0.99669 0.98504 1.21054 0.95844 0.92655 0.89518 1.46038 1.09788 1.45193 1.37328 1.20532 0.84692 0.80761 0.83445 1.90728 1.22855 1.63530 1.63934 1.22823 1.01530 0.94567 0.97178 1.22831 1.00514 0.93110 0.99699 1.22829 0.98547 0.97781 0.98847 1.22809 0.96071 0.95036 1.01750 1.22768 0.95977 0.83154 0.96153 0.92621 1.86475 1.50720 1.30516 1.69883 1.21527 0.98825 0.87458 0.92931 0.93387 0.95762 0.88886 0.91915 0.92377 0.77073 0.88418 0.88403 0.90416 0.90489 0.76729 0.86941 0.89596 0.90635 0.89867 0.90918 0.90986 0.88610 0.77989 0.95339 0.92165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.75 11.20 55.49 0.62 -25.13 16 2 C 0.01 0.16 4.92 -17.43 -0.09 0.07 16 3 Si 0.90 21.11 29.59 -169.99 -5.03 16.08 16 4 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 7 C -0.26 -6.91 9.58 -15.06 -0.14 -7.06 16 8 H 0.07 1.69 7.89 -52.49 -0.41 1.28 16 9 N -0.59 -14.23 2.99 -172.32 -0.52 -14.74 16 10 C 0.17 4.06 5.30 -3.71 -0.02 4.04 16 11 C -0.15 -2.83 5.65 -26.61 -0.15 -2.98 16 12 C 0.16 2.84 2.12 -67.89 -0.14 2.69 16 13 H 0.09 1.81 7.58 -51.93 -0.39 1.41 16 14 N -0.72 -9.85 4.92 -53.76 -0.26 -10.12 16 15 C 0.51 7.29 7.79 -10.98 -0.09 7.21 16 16 O -0.54 -10.19 15.64 5.56 0.09 -10.11 16 17 C -0.15 -1.36 5.81 -27.88 -0.16 -1.52 16 18 C 0.13 1.47 4.96 -4.04 -0.02 1.45 16 19 N -0.73 -6.09 5.56 -60.29 -0.33 -6.42 16 20 C 0.52 5.40 7.35 -10.99 -0.08 5.32 16 21 O -0.53 -8.14 15.90 5.56 0.09 -8.06 16 22 C -0.14 -0.94 4.15 -90.95 -0.38 -1.32 16 23 C -0.12 -0.67 7.63 -25.92 -0.20 -0.87 16 24 C -0.14 -0.73 8.08 -25.93 -0.21 -0.94 16 25 C -0.12 -0.85 7.40 -25.93 -0.19 -1.04 16 26 C 0.08 1.32 3.14 -26.61 -0.08 1.24 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 28 O -0.57 -8.17 13.16 -35.23 -0.46 -8.63 16 29 C 0.12 2.41 6.14 -3.71 -0.02 2.38 16 30 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.09 2.46 6.06 -51.93 -0.31 2.14 16 33 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.40 4.26 8.60 -40.82 -0.35 3.91 16 36 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 1.04 8.10 -51.92 -0.42 0.62 16 39 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 40 H 0.40 1.89 8.47 -40.82 -0.35 1.55 16 41 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.09 0.56 8.09 -51.93 -0.42 0.14 16 43 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.10 0.88 7.43 -51.93 -0.39 0.50 16 48 H 0.37 3.77 9.08 45.56 0.41 4.19 16 49 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 LS Contribution 403.67 15.07 6.08 6.08 Total: -1.00 -35.23 403.67 -9.38 -44.60 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -7.67 Total: 7.75 kcal Atomic # 6 Polarization: 10.66 SS G_CDS: -1.98 Total: 8.68 kcal Atomic # 7 Polarization: -55.92 SS G_CDS: -0.49 Total: -56.41 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -0.29 Total: -26.79 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.23 -9.38 -44.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100032483.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.613 kcal (2) G-P(sol) polarization free energy of solvation -35.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds