Wall clock time and date at job start Sat Apr 11 2020 05:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99684 * 2 1 4 4 H 1.48504 * 109.47275 * 269.99690 * 3 2 1 5 5 H 1.48498 * 109.47444 * 29.99594 * 3 2 1 6 6 H 1.48498 * 109.47288 * 150.00065 * 3 2 1 7 7 C 1.38808 * 120.00083 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00345 * 163.08307 * 7 2 1 9 9 N 1.36936 * 120.00060 * 343.07635 * 7 2 1 10 10 C 1.46929 * 120.63155 * 331.83648 * 9 7 2 11 11 C 1.53191 * 108.77352 * 233.58522 * 10 9 7 12 12 C 1.53036 * 109.31170 * 305.36254 * 11 10 9 13 13 H 1.09001 * 109.46510 * 301.35821 * 12 11 10 14 14 N 1.46505 * 109.45973 * 181.38735 * 12 11 10 15 15 C 1.34776 * 119.99658 * 85.00023 * 14 12 11 16 16 O 1.21278 * 120.00558 * 0.02562 * 15 14 12 17 17 C 1.50706 * 119.99745 * 180.02562 * 15 14 12 18 18 C 1.52998 * 109.47235 * 180.02562 * 17 15 14 19 19 N 1.46503 * 109.47365 * 180.02562 * 18 17 15 20 20 C 1.34776 * 119.99875 * 179.97438 * 19 18 17 21 21 O 1.21275 * 120.00121 * 359.97438 * 20 19 18 22 22 C 1.50699 * 119.99482 * 180.02562 * 20 19 18 23 23 C 1.53786 * 113.61250 * 277.49408 * 22 20 19 24 24 C 1.53781 * 87.08278 * 220.02043 * 23 22 20 25 25 C 1.53786 * 113.61069 * 180.02562 * 22 20 19 26 26 C 1.53040 * 109.53818 * 61.36979 * 12 11 10 27 27 H 1.08995 * 109.49767 * 58.58749 * 26 12 11 28 28 O 1.42898 * 109.49774 * 178.67761 * 26 12 11 29 29 C 1.46929 * 120.63176 * 151.81295 * 9 7 2 30 30 H 0.96997 * 120.00351 * 0.02562 * 1 2 3 31 31 H 1.08996 * 109.58327 * 113.79812 * 10 9 7 32 32 H 1.08998 * 109.58399 * 353.37622 * 10 9 7 33 33 H 1.09007 * 109.49248 * 185.41689 * 11 10 9 34 34 H 1.08991 * 109.50097 * 65.31965 * 11 10 9 35 35 H 0.96998 * 120.00353 * 265.00236 * 14 12 11 36 36 H 1.09000 * 109.47431 * 59.99970 * 17 15 14 37 37 H 1.08997 * 109.47008 * 300.00163 * 17 15 14 38 38 H 1.09007 * 109.47056 * 299.99835 * 18 17 15 39 39 H 1.09000 * 109.47195 * 59.99508 * 18 17 15 40 40 H 0.97000 * 119.99590 * 359.97438 * 19 18 17 41 41 H 1.08995 * 112.85697 * 48.80419 * 22 20 19 42 42 H 1.09001 * 113.61408 * 334.57233 * 23 22 20 43 43 H 1.09003 * 113.61232 * 105.47802 * 23 22 20 44 44 H 1.09000 * 113.61840 * 270.88616 * 24 23 22 45 45 H 1.09000 * 113.68927 * 139.98662 * 24 23 22 46 46 H 1.08996 * 113.61292 * 254.52435 * 25 22 20 47 47 H 1.08997 * 113.61643 * 25.34608 * 25 22 20 48 48 H 0.96701 * 114.00150 * 179.97438 * 28 26 12 49 49 H 1.08996 * 109.58627 * 246.20221 * 29 9 7 50 50 H 1.09006 * 109.58201 * 6.48388 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2225 -0.2716 9 7 1.3701 -2.3622 0.3463 10 6 0.2262 -2.3399 1.2681 11 6 0.4977 -3.3191 2.4145 12 6 0.8120 -4.7007 1.8363 13 1 -0.0281 -5.0408 1.2308 14 7 1.0397 -5.6476 2.9308 15 6 -0.0051 -6.2706 3.5110 16 8 -1.1336 -6.0478 3.1269 17 6 0.2291 -7.2442 4.6373 18 6 -1.1122 -7.8061 5.1128 19 7 -0.8846 -8.7521 6.2081 20 6 -1.9294 -9.3750 6.7885 21 8 -3.0579 -9.1521 6.4044 22 6 -1.6953 -10.3477 7.9155 23 6 -1.3094 -11.7588 7.4412 24 6 -2.2129 -12.2976 8.5629 25 6 -2.9872 -10.9727 8.4680 26 6 2.0674 -4.6173 0.9649 27 1 2.9024 -4.2536 1.5637 28 8 2.3778 -5.9137 0.4503 29 6 1.8137 -3.6529 -0.1979 30 1 -0.4850 0.8400 -0.0004 31 1 -0.6769 -2.6404 0.7370 32 1 0.0994 -1.3342 1.6687 33 1 -0.3830 -3.3840 3.0537 34 1 1.3474 -2.9676 2.9996 35 1 1.9423 -5.8261 3.2378 36 1 0.7224 -6.7323 5.4635 37 1 0.8607 -8.0603 4.2866 38 1 -1.7442 -6.9901 5.4635 39 1 -1.6051 -8.3181 4.2865 40 1 0.0180 -8.9301 6.5155 41 1 -1.0372 -9.9501 8.6880 42 1 -1.6681 -11.9961 6.4396 43 1 -0.2539 -11.9927 7.5804 44 1 -1.6956 -12.4343 9.5126 45 1 -2.8005 -13.1683 8.2718 46 1 -3.2867 -10.5720 9.4364 47 1 -3.8049 -10.9940 7.7476 48 1 3.1638 -5.9357 -0.1126 49 1 1.0400 -4.0604 -0.8486 50 1 2.7331 -3.5130 -0.7667 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100032483.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:00 Heat of formation + Delta-G solvation = -119.448641 kcal Electronic energy + Delta-G solvation = -29348.752646 eV Core-core repulsion = 25182.496274 eV Total energy + Delta-G solvation = -4166.256373 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.38040 -41.01957 -39.49989 -38.44246 -36.97256 -36.28246 -35.72120 -33.83211 -32.43931 -31.41302 -30.14539 -27.97594 -26.95671 -26.51039 -24.86164 -23.93111 -23.33010 -22.04333 -21.48402 -21.03089 -20.23977 -18.98342 -18.50483 -18.07844 -17.98118 -17.35155 -17.00066 -16.75251 -16.69121 -16.36633 -15.70933 -15.70086 -15.54365 -15.21633 -15.02135 -14.79745 -14.46567 -14.35846 -13.86278 -13.80041 -13.58700 -13.39077 -13.27962 -13.01789 -12.99832 -12.88577 -12.71575 -12.47582 -12.38032 -12.14098 -12.11541 -12.08045 -11.88885 -11.42473 -11.40168 -11.27349 -11.10319 -10.94440 -10.69248 -10.57191 -10.18452 -10.01263 -8.77152 -7.91211 -5.39348 1.47726 1.49458 1.59141 1.59317 1.65652 1.88597 2.47003 2.48689 3.13029 3.26480 3.53494 3.60633 3.62466 3.68255 3.84821 3.86652 3.93639 4.00600 4.04314 4.09190 4.23183 4.26205 4.39144 4.49991 4.53004 4.70823 4.72021 4.81334 4.82526 4.84753 4.88026 4.94023 4.96951 5.02584 5.05410 5.11156 5.11997 5.19986 5.36056 5.37105 5.50532 5.54726 5.59324 5.64544 6.32876 6.54256 6.61643 6.89548 7.08578 7.26381 7.32317 7.77039 8.29960 9.16172 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026345 B = 0.001794 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.550102 B =15607.818356 C =16192.307870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.052 4.052 3 Si 0.972 3.028 4 H -0.285 1.285 5 H -0.297 1.297 6 H -0.263 1.263 7 C -0.266 4.266 8 H 0.079 0.921 9 N -0.603 5.603 10 C 0.178 3.822 11 C -0.128 4.128 12 C 0.169 3.831 13 H 0.050 0.950 14 N -0.700 5.700 15 C 0.507 3.493 16 O -0.594 6.594 17 C -0.131 4.131 18 C 0.138 3.862 19 N -0.711 5.711 20 C 0.511 3.489 21 O -0.594 6.594 22 C -0.132 4.132 23 C -0.118 4.118 24 C -0.132 4.132 25 C -0.133 4.133 26 C 0.105 3.895 27 H 0.078 0.922 28 O -0.570 6.570 29 C 0.115 3.885 30 H 0.250 0.750 31 H -0.013 1.013 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.417 0.583 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.046 0.954 39 H 0.045 0.955 40 H 0.422 0.578 41 H 0.146 0.854 42 H 0.067 0.933 43 H 0.104 0.896 44 H 0.106 0.894 45 H 0.071 0.929 46 H 0.078 0.922 47 H 0.064 0.936 48 H 0.396 0.604 49 H 0.007 0.993 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.021 -23.870 18.389 31.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.247 4.247 3 Si 0.799 3.201 4 H -0.212 1.212 5 H -0.223 1.223 6 H -0.188 1.188 7 C -0.395 4.395 8 H 0.096 0.904 9 N -0.327 5.327 10 C 0.052 3.948 11 C -0.168 4.168 12 C 0.063 3.937 13 H 0.068 0.932 14 N -0.351 5.351 15 C 0.295 3.705 16 O -0.475 6.475 17 C -0.171 4.171 18 C 0.013 3.987 19 N -0.364 5.364 20 C 0.300 3.700 21 O -0.474 6.474 22 C -0.153 4.153 23 C -0.156 4.156 24 C -0.169 4.169 25 C -0.171 4.171 26 C 0.044 3.956 27 H 0.096 0.904 28 O -0.377 6.377 29 C -0.011 4.011 30 H 0.059 0.941 31 H 0.005 0.995 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.255 0.745 36 H 0.155 0.845 37 H 0.154 0.846 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.260 0.740 41 H 0.164 0.836 42 H 0.086 0.914 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.090 0.910 46 H 0.096 0.904 47 H 0.082 0.918 48 H 0.246 0.754 49 H 0.025 0.975 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.848 -23.596 18.155 30.549 hybrid contribution 0.572 1.548 -0.850 1.856 sum 7.419 -22.047 17.306 28.993 Atomic orbital electron populations 1.70213 1.07045 1.26072 1.55066 1.25920 0.95964 1.01961 1.00899 0.85219 0.78176 0.79102 0.77575 1.21178 1.22307 1.18771 1.19578 0.93134 0.85438 1.41394 0.90377 1.44244 1.35622 1.02276 1.50576 1.20548 0.87769 0.97703 0.88782 1.22302 1.01215 0.94536 0.98774 1.20594 0.97090 0.88598 0.87429 0.93212 1.45802 1.10335 1.43380 1.35604 1.21172 0.84234 0.81231 0.83912 1.90754 1.25018 1.66041 1.65661 1.21725 0.98449 0.99479 0.97409 1.20768 0.96752 0.91936 0.89261 1.45816 1.10732 1.43819 1.36020 1.21350 0.84041 0.80765 0.83890 1.90709 1.25357 1.65528 1.65854 1.22966 1.01836 0.94141 0.96357 1.22823 1.02173 0.91738 0.98866 1.22832 0.97958 0.96360 0.99786 1.22841 0.95854 0.97185 1.01247 1.22268 0.95778 0.83176 0.94426 0.90427 1.86447 1.52325 1.28557 1.70412 1.21721 0.98609 0.86393 0.94417 0.94065 0.99498 0.91969 0.92699 0.90785 0.74538 0.84494 0.84577 0.93554 0.93602 0.73990 0.83591 0.91382 0.87785 0.87587 0.91042 0.90360 0.91771 0.75356 0.97459 0.90517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.99 11.20 21.65 0.24 -55.74 16 2 C -0.05 -2.86 4.92 84.86 0.42 -2.44 16 3 Si 0.97 43.71 29.59 68.60 2.03 45.74 16 4 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 5 H -0.30 -13.59 7.11 99.48 0.71 -12.89 16 6 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 7 C -0.27 -14.03 9.58 84.03 0.81 -13.23 16 8 H 0.08 3.87 7.89 -2.91 -0.02 3.85 16 9 N -0.60 -29.51 2.99 -699.11 -2.09 -31.60 16 10 C 0.18 8.89 5.30 86.36 0.46 9.35 16 11 C -0.13 -5.00 5.65 30.67 0.17 -4.82 16 12 C 0.17 5.80 2.12 45.02 0.10 5.90 16 13 H 0.05 2.12 7.58 -2.39 -0.02 2.11 16 14 N -0.70 -17.61 4.92 -442.40 -2.18 -19.79 16 15 C 0.51 13.75 7.79 87.66 0.68 14.43 16 16 O -0.59 -23.39 15.64 -3.02 -0.05 -23.44 16 17 C -0.13 -1.91 5.81 29.85 0.17 -1.73 16 18 C 0.14 2.99 4.96 86.38 0.43 3.41 16 19 N -0.71 -10.49 5.56 -463.06 -2.57 -13.06 16 20 C 0.51 10.42 7.35 87.66 0.64 11.07 16 21 O -0.59 -19.25 15.90 -3.01 -0.05 -19.29 16 22 C -0.13 -1.50 4.15 -11.01 -0.05 -1.54 16 23 C -0.12 -0.98 7.63 31.12 0.24 -0.74 16 24 C -0.13 -1.05 8.08 31.11 0.25 -0.80 16 25 C -0.13 -1.84 7.40 31.11 0.23 -1.61 16 26 C 0.10 3.20 3.14 30.67 0.10 3.29 16 27 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 28 O -0.57 -14.39 13.16 -148.98 -1.96 -16.35 16 29 C 0.12 4.53 6.14 86.36 0.53 5.06 16 30 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 31 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 32 H 0.06 3.46 6.06 -2.39 -0.01 3.45 16 33 H 0.05 2.21 8.14 -2.38 -0.02 2.19 16 34 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 35 H 0.42 7.08 8.60 -92.71 -0.80 6.28 16 36 H 0.14 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.14 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.05 1.30 8.10 -2.38 -0.02 1.28 16 39 H 0.05 1.28 8.10 -2.39 -0.02 1.26 16 40 H 0.42 2.26 8.47 -92.71 -0.79 1.48 16 41 H 0.15 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.07 0.82 8.09 -2.39 -0.02 0.80 16 43 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 44 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 45 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 46 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.06 1.29 7.43 -2.39 -0.02 1.28 16 48 H 0.40 6.35 9.08 -74.06 -0.67 5.68 16 49 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 50 H 0.08 2.73 7.93 -2.38 -0.02 2.71 16 Total: -1.00 -85.03 403.67 -2.73 -87.76 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: -1.29 Total: 20.18 kcal Atomic # 6 Polarization: 20.42 SS G_CDS: 5.18 Total: 25.60 kcal Atomic # 7 Polarization: -113.60 SS G_CDS: -6.60 Total: -120.19 kcal Atomic # 8 Polarization: -57.03 SS G_CDS: -2.06 Total: -59.08 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -85.03 -2.73 -87.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100032483.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.687 kcal (2) G-P(sol) polarization free energy of solvation -85.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds