Wall clock time and date at job start Sat Apr 11 2020 05:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86803 * 119.99815 * 2 1 4 4 H 1.48497 * 109.46875 * 270.00240 * 3 2 1 5 5 H 1.48499 * 109.47160 * 30.00201 * 3 2 1 6 6 H 1.48497 * 109.46929 * 150.00549 * 3 2 1 7 7 C 1.38947 * 120.00050 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99825 * 359.97438 * 7 2 1 9 9 N 1.37099 * 119.99972 * 179.97438 * 7 2 1 10 10 C 1.34781 * 119.99818 * 180.02562 * 9 7 2 11 11 O 1.21291 * 119.99757 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99894 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.47185 * 179.97438 * 12 10 9 14 14 C 1.46902 * 110.99875 * 179.97438 * 13 12 10 15 15 C 1.53777 * 113.61340 * 204.99365 * 14 13 12 16 16 C 1.53778 * 87.08530 * 219.93502 * 15 14 13 17 17 C 1.53001 * 113.61214 * 139.97992 * 16 15 14 18 18 N 1.46507 * 109.46894 * 176.53122 * 17 16 15 19 19 C 1.34770 * 119.99786 * 179.97438 * 18 17 16 20 20 O 1.21280 * 120.00593 * 0.02562 * 19 18 17 21 21 C 1.50706 * 120.00022 * 179.97438 * 19 18 17 22 22 C 1.52997 * 109.47220 * 180.02562 * 21 19 18 23 23 O 1.42896 * 112.91057 * 53.75218 * 22 21 19 24 24 C 1.53784 * 113.61270 * 282.49775 * 22 21 19 25 25 C 1.53779 * 87.08045 * 220.02125 * 24 22 21 26 26 C 1.53779 * 87.08402 * 25.43458 * 25 24 22 27 27 C 1.53781 * 87.16935 * 25.39431 * 16 15 14 28 28 H 0.97005 * 120.00320 * 359.97438 * 1 2 3 29 29 H 0.96994 * 119.99912 * 359.97438 * 9 7 2 30 30 H 1.09000 * 109.47444 * 59.99209 * 12 10 9 31 31 H 1.09004 * 109.47277 * 299.99948 * 12 10 9 32 32 H 1.00898 * 110.99625 * 303.95166 * 13 12 10 33 33 H 1.09002 * 112.85347 * 336.19837 * 14 13 12 34 34 H 1.09004 * 113.61263 * 105.38810 * 15 14 13 35 35 H 1.08996 * 113.61914 * 334.48901 * 15 14 13 36 36 H 1.08993 * 113.61957 * 270.80243 * 16 15 14 37 37 H 1.09001 * 109.47268 * 56.53577 * 17 16 15 38 38 H 1.08996 * 109.47687 * 296.53119 * 17 16 15 39 39 H 0.97003 * 119.99722 * 0.02562 * 18 17 16 40 40 H 1.09001 * 109.46646 * 60.00393 * 21 19 18 41 41 H 1.08999 * 109.47368 * 300.00806 * 21 19 18 42 42 H 0.96699 * 113.99840 * 311.24594 * 23 22 21 43 43 H 1.09002 * 113.61478 * 334.57090 * 24 22 21 44 44 H 1.09004 * 113.61162 * 105.47268 * 24 22 21 45 45 H 1.09006 * 113.61307 * 270.88660 * 25 24 22 46 46 H 1.09007 * 113.61642 * 139.98417 * 25 24 22 47 47 H 1.08997 * 113.61646 * 220.02209 * 26 25 24 48 48 H 1.09000 * 113.61527 * 89.11480 * 26 25 24 49 49 H 1.09000 * 113.61665 * 89.15546 * 27 16 15 50 50 H 1.09004 * 113.61463 * 220.06199 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4402 0.6999 7 6 2.0088 -1.2033 -0.0005 8 1 1.4688 -2.1386 -0.0005 9 7 3.3798 -1.2033 -0.0011 10 6 4.0537 -2.3705 -0.0021 11 8 3.4472 -3.4209 -0.0021 12 6 5.5607 -2.3705 -0.0033 13 7 6.0504 -3.7555 -0.0037 14 6 7.5189 -3.7947 -0.0054 15 6 8.0999 -5.0878 -0.6012 16 6 9.1505 -5.0396 0.5206 17 6 9.4700 -6.4105 1.1203 18 7 10.5349 -6.2714 2.1168 19 6 10.9829 -7.3557 2.7801 20 8 10.5048 -8.4466 2.5518 21 6 12.0788 -7.2127 3.8047 22 6 12.3981 -8.5835 4.4045 23 8 12.6991 -9.5679 3.4134 24 6 11.3709 -9.0538 5.4479 25 6 12.5606 -9.5877 6.2630 26 6 13.4215 -8.5309 5.5512 27 6 8.1289 -4.2323 1.3387 28 1 -0.4851 0.8401 0.0004 29 1 3.8648 -0.3633 -0.0014 30 1 5.9248 -1.8570 0.8866 31 1 5.9234 -1.8563 -0.8933 32 1 5.6755 -4.2717 0.7780 33 1 7.9660 -2.8873 -0.4115 34 1 8.5200 -4.9586 -1.5987 35 1 7.4261 -5.9417 -0.5321 36 1 10.0443 -4.4739 0.2578 37 1 9.7980 -7.0854 0.3298 38 1 8.5773 -6.8157 1.5968 39 1 10.9170 -5.3987 2.2996 40 1 11.7513 -6.5373 4.5950 41 1 12.9715 -6.8082 3.3279 42 1 12.0590 -9.6059 2.6897 43 1 10.8388 -8.2371 5.9357 44 1 10.7051 -9.8361 5.0834 45 1 12.8346 -10.6132 6.0150 46 1 12.4643 -9.4219 7.3361 47 1 14.4111 -8.8910 5.2701 48 1 13.4500 -7.5712 6.0673 49 1 7.4629 -4.8519 1.9393 50 1 8.5723 -3.4134 1.9052 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100311451.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:09 Heat of formation + Delta-G solvation = -80.309193 kcal Electronic energy + Delta-G solvation = -28433.069575 eV Core-core repulsion = 24268.510416 eV Total energy + Delta-G solvation = -4164.559159 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.90901 -39.79988 -38.85661 -38.23233 -35.36245 -34.71803 -34.12557 -33.34757 -31.67266 -31.10023 -28.22700 -26.43217 -26.12304 -25.87639 -24.08658 -23.58872 -21.70435 -21.08731 -20.00787 -19.94474 -19.29801 -18.29937 -17.52605 -17.13807 -16.42067 -16.14587 -16.06779 -15.81352 -15.39690 -15.30886 -15.12632 -14.84225 -14.41997 -14.26119 -14.04544 -13.74436 -13.37058 -13.17221 -12.94060 -12.74224 -12.65941 -12.62761 -12.52563 -12.22622 -12.01638 -11.87833 -11.71336 -11.58118 -11.24446 -11.22095 -11.15071 -10.90093 -10.76558 -10.62961 -10.58936 -10.07497 -10.03279 -9.99038 -9.59428 -9.49742 -8.60213 -8.20935 -8.12152 -6.32830 -3.84392 2.13878 2.69265 2.99776 3.04709 3.12886 3.70307 3.71780 4.02652 4.04144 4.08684 4.15043 4.20329 4.26865 4.34126 4.44650 4.55013 4.66266 4.71133 4.81948 4.86996 4.95221 4.98746 5.13842 5.18930 5.20872 5.23316 5.34674 5.36410 5.49020 5.52759 5.56179 5.59643 5.61288 5.70970 5.72238 5.82718 5.84450 5.88214 5.91326 5.96859 6.03988 6.17713 6.99287 7.12350 7.40513 7.54330 7.56945 7.78877 8.12792 8.57875 8.93221 9.40531 9.80757 10.80299 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023831 B = 0.001495 C = 0.001473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.667844 B =18718.592718 C =19010.095317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.042 3.958 3 Si 0.880 3.120 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.306 4.306 8 H 0.120 0.880 9 N -0.591 5.591 10 C 0.449 3.551 11 O -0.565 6.565 12 C 0.048 3.952 13 N -0.657 5.657 14 C 0.069 3.931 15 C -0.116 4.116 16 C -0.125 4.125 17 C 0.128 3.872 18 N -0.725 5.725 19 C 0.515 3.485 20 O -0.542 6.542 21 C -0.165 4.165 22 C 0.128 3.872 23 O -0.548 6.548 24 C -0.162 4.162 25 C -0.135 4.135 26 C -0.129 4.129 27 C -0.166 4.166 28 H 0.273 0.727 29 H 0.370 0.630 30 H 0.044 0.956 31 H 0.087 0.913 32 H 0.353 0.647 33 H 0.096 0.904 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.402 0.598 40 H 0.105 0.895 41 H 0.102 0.898 42 H 0.389 0.611 43 H 0.083 0.917 44 H 0.076 0.924 45 H 0.084 0.916 46 H 0.068 0.932 47 H 0.077 0.923 48 H 0.093 0.907 49 H 0.086 0.914 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.603 -9.220 8.623 33.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.161 4.161 3 Si 0.707 3.293 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.435 4.435 8 H 0.137 0.863 9 N -0.230 5.230 10 C 0.234 3.766 11 O -0.447 6.447 12 C -0.085 4.085 13 N -0.288 5.288 14 C -0.043 4.043 15 C -0.155 4.155 16 C -0.144 4.144 17 C 0.005 3.995 18 N -0.376 5.376 19 C 0.302 3.698 20 O -0.421 6.421 21 C -0.205 4.205 22 C 0.086 3.914 23 O -0.360 6.360 24 C -0.200 4.200 25 C -0.173 4.173 26 C -0.166 4.166 27 C -0.205 4.205 28 H 0.084 0.916 29 H 0.203 0.797 30 H 0.062 0.938 31 H 0.105 0.895 32 H 0.174 0.826 33 H 0.114 0.886 34 H 0.090 0.910 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.236 0.764 40 H 0.123 0.877 41 H 0.120 0.880 42 H 0.244 0.756 43 H 0.102 0.898 44 H 0.095 0.905 45 H 0.102 0.898 46 H 0.087 0.913 47 H 0.095 0.905 48 H 0.111 0.889 49 H 0.105 0.895 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 30.017 -10.765 8.128 32.908 hybrid contribution 0.408 2.436 0.610 2.544 sum 30.425 -8.329 8.738 32.732 Atomic orbital electron populations 1.69622 1.05645 1.27497 1.49328 1.25039 0.95490 0.97965 0.97646 0.86664 0.79709 0.84050 0.78897 1.19591 1.20187 1.19579 1.19440 0.79266 0.96651 1.48105 0.86285 1.42209 1.07536 1.06157 1.67103 1.19744 0.88260 0.84563 0.84011 1.90569 1.69450 1.30953 1.53684 1.21749 0.94984 0.90643 1.01137 1.59999 1.05218 1.12476 1.51135 1.23026 0.88053 0.98158 0.95028 1.23051 0.96155 0.99059 0.97225 1.22663 0.98021 0.95319 0.98421 1.21440 0.90248 0.97054 0.90729 1.46074 1.39616 1.10552 1.41337 1.20697 0.83138 0.84347 0.81649 1.90581 1.59028 1.26159 1.66356 1.22378 0.98416 1.00704 0.99011 1.21799 0.96265 0.85723 0.87640 1.86344 1.54909 1.57348 1.37430 1.23581 0.97197 1.01703 0.97504 1.22746 0.96350 0.99249 0.98933 1.23069 0.98533 1.00121 0.94866 1.23879 0.98767 1.00016 0.97824 0.91604 0.79713 0.93783 0.89509 0.82600 0.88644 0.90997 0.89022 0.88717 0.91140 0.90962 0.76431 0.87652 0.88015 0.75594 0.89836 0.90497 0.89780 0.91338 0.90468 0.88892 0.89527 0.91552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.65 13.96 55.50 0.77 -24.87 16 2 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 3 Si 0.88 19.15 27.74 -169.99 -4.71 14.43 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 6 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 7 C -0.31 -8.63 10.16 -14.93 -0.15 -8.78 16 8 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 9 N -0.59 -13.93 5.09 -10.96 -0.06 -13.98 16 10 C 0.45 10.05 7.82 -10.99 -0.09 9.97 16 11 O -0.56 -15.11 15.78 5.55 0.09 -15.03 16 12 C 0.05 0.76 6.01 -4.98 -0.03 0.73 16 13 N -0.66 -9.60 6.24 -107.03 -0.67 -10.26 16 14 C 0.07 0.69 4.18 -66.81 -0.28 0.42 16 15 C -0.12 -1.03 7.44 -25.92 -0.19 -1.22 16 16 C -0.13 -0.83 3.75 -89.81 -0.34 -1.17 16 17 C 0.13 0.96 5.50 -4.04 -0.02 0.94 16 18 N -0.72 -4.44 5.56 -60.29 -0.33 -4.77 16 19 C 0.51 4.05 7.58 -10.99 -0.08 3.96 16 20 O -0.54 -6.15 13.60 -14.26 -0.19 -6.34 16 21 C -0.16 -0.89 5.34 -27.88 -0.15 -1.04 16 22 C 0.13 0.97 1.10 -89.80 -0.10 0.87 16 23 O -0.55 -5.59 13.40 -55.05 -0.74 -6.33 16 24 C -0.16 -1.25 7.16 -25.92 -0.19 -1.44 16 25 C -0.14 -0.91 8.02 -25.92 -0.21 -1.12 16 26 C -0.13 -0.77 7.47 -25.92 -0.19 -0.97 16 27 C -0.17 -1.33 7.27 -25.83 -0.19 -1.52 16 28 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.37 7.61 5.76 -40.82 -0.24 7.37 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.09 1.23 8.13 -51.93 -0.42 0.81 16 32 H 0.35 5.43 7.91 -39.29 -0.31 5.12 16 33 H 0.10 0.88 7.87 -51.93 -0.41 0.48 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.09 0.93 8.10 -51.93 -0.42 0.51 16 36 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.66 7.87 -51.93 -0.41 0.26 16 39 H 0.40 1.44 8.47 -40.82 -0.35 1.09 16 40 H 0.11 0.36 8.05 -51.93 -0.42 -0.06 16 41 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.39 3.99 6.18 45.56 0.28 4.27 16 43 H 0.08 0.55 8.04 -51.93 -0.42 0.13 16 44 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 48 H 0.09 0.37 8.10 -51.93 -0.42 -0.05 16 49 H 0.09 0.79 7.61 -51.93 -0.40 0.40 16 50 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 405.60 15.07 6.11 6.11 Total: -1.00 -34.66 405.60 -9.74 -44.39 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: -7.71 Total: 15.99 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: -2.30 Total: 0.66 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: -0.28 Total: -53.89 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -0.84 Total: -27.70 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -4.71 Total: 14.43 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.66 -9.74 -44.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100311451.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.915 kcal (2) G-P(sol) polarization free energy of solvation -34.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds