Wall clock time and date at job start Sat Apr 11 2020 05:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86803 * 119.99815 * 2 1 4 4 H 1.48497 * 109.46875 * 270.00240 * 3 2 1 5 5 H 1.48499 * 109.47160 * 30.00201 * 3 2 1 6 6 H 1.48497 * 109.46929 * 150.00549 * 3 2 1 7 7 C 1.38947 * 120.00050 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99825 * 359.97438 * 7 2 1 9 9 N 1.37099 * 119.99972 * 179.97438 * 7 2 1 10 10 C 1.34781 * 119.99818 * 180.02562 * 9 7 2 11 11 O 1.21291 * 119.99757 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99894 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.47185 * 179.97438 * 12 10 9 14 14 C 1.46902 * 110.99875 * 179.97438 * 13 12 10 15 15 C 1.53777 * 113.61340 * 204.99365 * 14 13 12 16 16 C 1.53778 * 87.08530 * 219.93502 * 15 14 13 17 17 C 1.53001 * 113.61214 * 139.97992 * 16 15 14 18 18 N 1.46507 * 109.46894 * 176.53122 * 17 16 15 19 19 C 1.34770 * 119.99786 * 179.97438 * 18 17 16 20 20 O 1.21280 * 120.00593 * 0.02562 * 19 18 17 21 21 C 1.50706 * 120.00022 * 179.97438 * 19 18 17 22 22 C 1.52997 * 109.47220 * 180.02562 * 21 19 18 23 23 O 1.42896 * 112.91057 * 53.75218 * 22 21 19 24 24 C 1.53784 * 113.61270 * 282.49775 * 22 21 19 25 25 C 1.53779 * 87.08045 * 220.02125 * 24 22 21 26 26 C 1.53779 * 87.08402 * 25.43458 * 25 24 22 27 27 C 1.53781 * 87.16935 * 25.39431 * 16 15 14 28 28 H 0.97005 * 120.00320 * 359.97438 * 1 2 3 29 29 H 0.96994 * 119.99912 * 359.97438 * 9 7 2 30 30 H 1.09000 * 109.47444 * 59.99209 * 12 10 9 31 31 H 1.09004 * 109.47277 * 299.99948 * 12 10 9 32 32 H 1.00898 * 110.99625 * 303.95166 * 13 12 10 33 33 H 1.09002 * 112.85347 * 336.19837 * 14 13 12 34 34 H 1.09004 * 113.61263 * 105.38810 * 15 14 13 35 35 H 1.08996 * 113.61914 * 334.48901 * 15 14 13 36 36 H 1.08993 * 113.61957 * 270.80243 * 16 15 14 37 37 H 1.09001 * 109.47268 * 56.53577 * 17 16 15 38 38 H 1.08996 * 109.47687 * 296.53119 * 17 16 15 39 39 H 0.97003 * 119.99722 * 0.02562 * 18 17 16 40 40 H 1.09001 * 109.46646 * 60.00393 * 21 19 18 41 41 H 1.08999 * 109.47368 * 300.00806 * 21 19 18 42 42 H 0.96699 * 113.99840 * 311.24594 * 23 22 21 43 43 H 1.09002 * 113.61478 * 334.57090 * 24 22 21 44 44 H 1.09004 * 113.61162 * 105.47268 * 24 22 21 45 45 H 1.09006 * 113.61307 * 270.88660 * 25 24 22 46 46 H 1.09007 * 113.61642 * 139.98417 * 25 24 22 47 47 H 1.08997 * 113.61646 * 220.02209 * 26 25 24 48 48 H 1.09000 * 113.61527 * 89.11480 * 26 25 24 49 49 H 1.09000 * 113.61665 * 89.15546 * 27 16 15 50 50 H 1.09004 * 113.61463 * 220.06199 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4402 0.6999 7 6 2.0088 -1.2033 -0.0005 8 1 1.4688 -2.1386 -0.0005 9 7 3.3798 -1.2033 -0.0011 10 6 4.0537 -2.3705 -0.0021 11 8 3.4472 -3.4209 -0.0021 12 6 5.5607 -2.3705 -0.0033 13 7 6.0504 -3.7555 -0.0037 14 6 7.5189 -3.7947 -0.0054 15 6 8.0999 -5.0878 -0.6012 16 6 9.1505 -5.0396 0.5206 17 6 9.4700 -6.4105 1.1203 18 7 10.5349 -6.2714 2.1168 19 6 10.9829 -7.3557 2.7801 20 8 10.5048 -8.4466 2.5518 21 6 12.0788 -7.2127 3.8047 22 6 12.3981 -8.5835 4.4045 23 8 12.6991 -9.5679 3.4134 24 6 11.3709 -9.0538 5.4479 25 6 12.5606 -9.5877 6.2630 26 6 13.4215 -8.5309 5.5512 27 6 8.1289 -4.2323 1.3387 28 1 -0.4851 0.8401 0.0004 29 1 3.8648 -0.3633 -0.0014 30 1 5.9248 -1.8570 0.8866 31 1 5.9234 -1.8563 -0.8933 32 1 5.6755 -4.2717 0.7780 33 1 7.9660 -2.8873 -0.4115 34 1 8.5200 -4.9586 -1.5987 35 1 7.4261 -5.9417 -0.5321 36 1 10.0443 -4.4739 0.2578 37 1 9.7980 -7.0854 0.3298 38 1 8.5773 -6.8157 1.5968 39 1 10.9170 -5.3987 2.2996 40 1 11.7513 -6.5373 4.5950 41 1 12.9715 -6.8082 3.3279 42 1 12.0590 -9.6059 2.6897 43 1 10.8388 -8.2371 5.9357 44 1 10.7051 -9.8361 5.0834 45 1 12.8346 -10.6132 6.0150 46 1 12.4643 -9.4219 7.3361 47 1 14.4111 -8.8910 5.2701 48 1 13.4500 -7.5712 6.0673 49 1 7.4629 -4.8519 1.9393 50 1 8.5723 -3.4134 1.9052 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100311451.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:08 Heat of formation + Delta-G solvation = -109.046345 kcal Electronic energy + Delta-G solvation = -28434.315711 eV Core-core repulsion = 24268.510416 eV Total energy + Delta-G solvation = -4165.805295 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.49800 -40.63730 -40.02548 -39.36136 -36.27499 -35.88970 -35.39355 -34.45798 -33.72495 -31.64526 -29.19165 -27.72945 -26.64824 -26.54323 -25.60758 -24.30642 -22.46108 -21.70110 -21.34662 -20.64744 -20.56907 -20.02208 -18.12707 -17.83830 -17.57854 -17.01801 -16.96091 -16.74771 -16.49499 -16.32509 -15.98563 -15.81934 -15.48958 -15.38931 -15.00425 -14.77785 -14.57925 -14.25448 -14.08596 -13.94756 -13.59796 -13.53604 -13.32732 -13.20694 -13.02867 -12.84354 -12.64777 -12.50691 -12.41283 -12.13440 -11.98899 -11.86734 -11.78440 -11.53660 -11.51079 -11.39487 -11.27665 -10.69129 -10.61629 -10.41702 -10.25200 -10.09837 -9.20008 -8.41457 -6.02899 1.30108 1.36500 1.45317 1.56806 1.95871 2.16169 2.23469 2.77126 3.14876 3.15156 3.41166 3.51345 3.63149 3.63759 3.67280 3.73714 3.92557 3.95868 4.05056 4.18764 4.19121 4.31896 4.40574 4.44521 4.48666 4.54213 4.59084 4.73549 4.74103 4.78998 4.84691 4.87370 4.90072 4.95188 5.03977 5.13066 5.14823 5.24067 5.31020 5.37115 5.43784 5.50204 5.55444 5.92719 6.18765 6.41351 6.52142 6.60050 6.73023 6.87952 7.25187 7.39660 7.96922 8.76313 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023831 B = 0.001495 C = 0.001473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.667844 B =18718.592718 C =19010.095317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.968 3.032 4 H -0.257 1.257 5 H -0.276 1.276 6 H -0.229 1.229 7 C -0.332 4.332 8 H 0.052 0.948 9 N -0.590 5.590 10 C 0.445 3.555 11 O -0.618 6.618 12 C 0.063 3.937 13 N -0.681 5.681 14 C 0.063 3.937 15 C -0.122 4.122 16 C -0.101 4.101 17 C 0.132 3.868 18 N -0.711 5.711 19 C 0.508 3.492 20 O -0.585 6.585 21 C -0.155 4.155 22 C 0.112 3.888 23 O -0.568 6.568 24 C -0.168 4.168 25 C -0.138 4.138 26 C -0.118 4.118 27 C -0.158 4.158 28 H 0.279 0.721 29 H 0.391 0.609 30 H 0.079 0.921 31 H 0.115 0.885 32 H 0.343 0.657 33 H 0.117 0.883 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.124 0.876 37 H 0.060 0.940 38 H 0.048 0.952 39 H 0.418 0.582 40 H 0.134 0.866 41 H 0.124 0.876 42 H 0.385 0.615 43 H 0.098 0.902 44 H 0.047 0.953 45 H 0.066 0.934 46 H 0.084 0.916 47 H 0.072 0.928 48 H 0.123 0.877 49 H 0.069 0.931 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.995 -5.529 9.412 36.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.214 4.214 3 Si 0.787 3.213 4 H -0.181 1.181 5 H -0.201 1.201 6 H -0.152 1.152 7 C -0.461 4.461 8 H 0.071 0.929 9 N -0.232 5.232 10 C 0.233 3.767 11 O -0.503 6.503 12 C -0.069 4.069 13 N -0.312 5.312 14 C -0.047 4.047 15 C -0.161 4.161 16 C -0.120 4.120 17 C 0.008 3.992 18 N -0.363 5.363 19 C 0.296 3.704 20 O -0.467 6.467 21 C -0.194 4.194 22 C 0.071 3.929 23 O -0.380 6.380 24 C -0.205 4.205 25 C -0.175 4.175 26 C -0.155 4.155 27 C -0.197 4.197 28 H 0.089 0.911 29 H 0.226 0.774 30 H 0.096 0.904 31 H 0.133 0.867 32 H 0.163 0.837 33 H 0.135 0.865 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.142 0.858 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.255 0.745 40 H 0.152 0.848 41 H 0.142 0.858 42 H 0.239 0.761 43 H 0.117 0.883 44 H 0.066 0.934 45 H 0.085 0.915 46 H 0.102 0.898 47 H 0.090 0.910 48 H 0.141 0.859 49 H 0.088 0.912 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 34.467 -7.049 8.923 36.295 hybrid contribution -1.044 1.101 0.349 1.557 sum 33.424 -5.948 9.273 35.192 Atomic orbital electron populations 1.69813 1.08241 1.29287 1.50235 1.26156 0.96483 1.02833 0.95954 0.85331 0.79517 0.76470 0.79965 1.18149 1.20065 1.15185 1.19014 0.81656 0.94891 1.50541 0.92940 1.42027 1.05732 1.07660 1.67768 1.21140 0.91292 0.83231 0.81013 1.90548 1.71540 1.32960 1.55218 1.21681 0.89071 0.92165 1.03962 1.60016 1.08191 1.11750 1.51212 1.23246 0.85278 0.99414 0.96741 1.23054 0.96644 0.97884 0.98559 1.22539 0.98228 0.94599 0.96595 1.21270 0.89791 0.97485 0.90649 1.45929 1.38814 1.11093 1.40434 1.21229 0.83348 0.83914 0.81865 1.90575 1.60509 1.27913 1.67700 1.22372 0.98239 0.99798 0.99036 1.22110 0.96895 0.86366 0.87577 1.86320 1.55011 1.58809 1.37891 1.23631 0.97169 1.01504 0.98231 1.22749 0.96151 0.98785 0.99865 1.23115 0.97510 1.01118 0.93762 1.23772 0.98542 1.00429 0.96955 0.91141 0.77378 0.90356 0.86684 0.83732 0.86485 0.90178 0.91273 0.85809 0.92125 0.93309 0.74450 0.84773 0.85805 0.76101 0.88347 0.93415 0.91484 0.89773 0.90963 0.85867 0.91209 0.89432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.40 13.96 21.66 0.30 -56.09 16 2 C -0.02 -0.87 5.50 84.93 0.47 -0.40 16 3 Si 0.97 38.09 27.74 68.60 1.90 39.99 16 4 H -0.26 -9.59 7.11 99.48 0.71 -8.89 16 5 H -0.28 -10.79 7.11 99.48 0.71 -10.08 16 6 H -0.23 -7.42 6.52 99.48 0.65 -6.77 16 7 C -0.33 -19.48 10.16 84.04 0.85 -18.62 16 8 H 0.05 3.69 7.39 -2.91 -0.02 3.67 16 9 N -0.59 -27.51 5.09 -306.98 -1.56 -29.08 16 10 C 0.45 19.90 7.82 87.66 0.69 20.58 16 11 O -0.62 -34.56 15.78 -3.06 -0.05 -34.60 16 12 C 0.06 1.82 6.01 85.56 0.51 2.34 16 13 N -0.68 -18.89 6.24 -492.54 -3.08 -21.97 16 14 C 0.06 1.09 4.18 45.50 0.19 1.28 16 15 C -0.12 -1.97 7.44 31.12 0.23 -1.74 16 16 C -0.10 -1.05 3.75 -10.27 -0.04 -1.08 16 17 C 0.13 1.83 5.50 86.38 0.47 2.31 16 18 N -0.71 -7.04 5.56 -463.05 -2.57 -9.61 16 19 C 0.51 7.31 7.58 87.66 0.66 7.98 16 20 O -0.58 -13.63 13.60 15.92 0.22 -13.42 16 21 C -0.15 -1.24 5.34 29.85 0.16 -1.08 16 22 C 0.11 1.57 1.10 -10.27 -0.01 1.56 16 23 O -0.57 -11.86 13.40 -130.03 -1.74 -13.60 16 24 C -0.17 -2.53 7.16 31.12 0.22 -2.31 16 25 C -0.14 -1.74 8.02 31.12 0.25 -1.50 16 26 C -0.12 -1.16 7.47 31.12 0.23 -0.92 16 27 C -0.16 -2.06 7.27 31.18 0.23 -1.84 16 28 H 0.28 15.34 8.31 -92.70 -0.77 14.57 16 29 H 0.39 14.81 5.76 -92.71 -0.53 14.27 16 30 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.12 2.73 8.13 -2.38 -0.02 2.71 16 32 H 0.34 10.56 7.91 -89.70 -0.71 9.85 16 33 H 0.12 1.57 7.87 -2.39 -0.02 1.55 16 34 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 35 H 0.07 1.43 8.10 -2.39 -0.02 1.41 16 36 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.05 0.92 7.87 -2.39 -0.02 0.90 16 39 H 0.42 1.32 8.47 -92.71 -0.79 0.53 16 40 H 0.13 0.33 8.05 -2.39 -0.02 0.31 16 41 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 42 H 0.38 8.43 6.18 -74.06 -0.46 7.98 16 43 H 0.10 1.14 8.04 -2.39 -0.02 1.12 16 44 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 46 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 47 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.12 0.47 8.10 -2.39 -0.02 0.45 16 49 H 0.07 1.19 7.61 -2.39 -0.02 1.17 16 50 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -84.74 405.60 -3.02 -87.76 By element: Atomic # 1 Polarization: 45.65 SS G_CDS: -1.56 Total: 44.09 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: 5.12 Total: 6.54 kcal Atomic # 7 Polarization: -109.85 SS G_CDS: -6.91 Total: -116.76 kcal Atomic # 8 Polarization: -60.05 SS G_CDS: -1.57 Total: -61.62 kcal Atomic # 14 Polarization: 38.09 SS G_CDS: 1.90 Total: 39.99 kcal Total: -84.74 -3.02 -87.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100311451.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.283 kcal (2) G-P(sol) polarization free energy of solvation -84.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds