Wall clock time and date at job start Sat Apr 11 2020 05:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86800 * 119.99692 * 2 1 4 4 H 1.48502 * 109.47453 * 270.00234 * 3 2 1 5 5 H 1.48506 * 109.47177 * 30.00328 * 3 2 1 6 6 H 1.48501 * 109.47270 * 150.00190 * 3 2 1 7 7 C 1.38944 * 120.00655 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00382 * 179.97438 * 7 2 1 9 9 N 1.37098 * 119.99905 * 359.97438 * 7 2 1 10 10 C 1.34781 * 120.00311 * 180.02562 * 9 7 2 11 11 O 1.21288 * 119.99719 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99940 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.46830 * 179.97438 * 12 10 9 14 14 C 1.46900 * 111.00033 * 170.00163 * 13 12 10 15 15 C 1.53234 * 109.34355 * 187.25446 * 14 13 12 16 16 N 1.47086 * 108.52178 * 306.17321 * 15 14 13 17 17 C 1.34777 * 120.87790 * 231.18496 * 16 15 14 18 18 O 1.21279 * 120.00432 * 355.22170 * 17 16 15 19 19 C 1.50703 * 119.99548 * 175.22179 * 17 16 15 20 20 C 1.52999 * 109.46976 * 275.21784 * 19 17 16 21 21 C 1.52998 * 109.47131 * 180.02562 * 20 19 17 22 22 C 1.52997 * 109.47304 * 59.99933 * 21 20 19 23 23 O 1.42906 * 109.46634 * 60.00123 * 22 21 20 24 24 C 1.53002 * 109.47094 * 300.00484 * 22 21 20 25 25 C 1.52994 * 109.46934 * 155.22344 * 19 17 16 26 26 C 1.47081 * 118.23717 * 51.45600 * 16 15 14 27 27 C 1.46902 * 111.00108 * 294.30470 * 13 12 10 28 28 H 0.96994 * 120.00417 * 359.97438 * 1 2 3 29 29 H 0.97003 * 120.00096 * 359.97438 * 9 7 2 30 30 H 1.09006 * 109.47011 * 60.00239 * 12 10 9 31 31 H 1.08990 * 109.47486 * 300.00094 * 12 10 9 32 32 H 1.09004 * 109.49381 * 67.29365 * 14 13 12 33 33 H 1.09000 * 109.49188 * 307.21885 * 14 13 12 34 34 H 1.08996 * 109.63080 * 186.45903 * 15 14 13 35 35 H 1.09001 * 109.62893 * 65.87939 * 15 14 13 36 36 H 1.08994 * 109.47337 * 35.22146 * 19 17 16 37 37 H 1.08994 * 109.47383 * 300.00334 * 20 19 17 38 38 H 1.09007 * 109.46934 * 60.00674 * 20 19 17 39 39 H 1.09006 * 109.47043 * 299.99908 * 21 20 19 40 40 H 1.09002 * 109.47404 * 180.02562 * 21 20 19 41 41 H 1.08995 * 109.47506 * 179.97438 * 22 21 20 42 42 H 0.96697 * 113.99948 * 60.00611 * 23 22 21 43 43 H 1.09001 * 109.46794 * 299.99240 * 24 22 21 44 44 H 1.09006 * 109.46836 * 179.97438 * 24 22 21 45 45 H 1.09002 * 109.46936 * 299.99926 * 25 19 17 46 46 H 1.08999 * 109.47681 * 59.99971 * 25 19 17 47 47 H 1.09001 * 109.62949 * 68.24948 * 26 16 15 48 48 H 1.08999 * 109.62938 * 188.83353 * 26 16 15 49 49 H 1.08994 * 109.48909 * 292.70432 * 27 13 12 50 50 H 1.08996 * 109.49366 * 52.76368 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0466 -1.4001 5 1 1.4454 2.6527 0.7001 6 1 3.5456 1.4403 0.7000 7 6 2.0089 -1.2032 -0.0005 8 1 3.0890 -1.2032 -0.0010 9 7 1.3236 -2.3906 -0.0005 10 6 1.9975 -3.5578 -0.0005 11 8 3.2104 -3.5577 -0.0010 12 6 1.2441 -4.8629 0.0000 13 7 2.1987 -5.9794 -0.0007 14 6 1.5146 -7.2573 0.2379 15 6 2.5573 -8.3669 0.4100 16 7 3.4543 -8.3498 -0.7556 17 6 3.7042 -9.4760 -1.4526 18 8 3.2570 -10.5369 -1.0715 19 6 4.5393 -9.4167 -2.7057 20 6 3.6497 -9.0475 -3.8944 21 6 4.4973 -8.9880 -5.1667 22 6 5.1401 -10.3538 -5.4157 23 8 4.1177 -11.3403 -5.5702 24 6 6.0297 -10.7232 -4.2269 25 6 5.1824 -10.7824 -2.9549 26 6 4.0762 -7.0725 -1.1364 27 6 2.9689 -6.0127 -1.2512 28 1 -0.4850 0.8400 0.0004 29 1 0.3535 -2.3907 0.0002 30 1 0.6171 -4.9209 -0.8898 31 1 0.6178 -4.9205 0.8902 32 1 0.8723 -7.4902 -0.6114 33 1 0.9100 -7.1829 1.1419 34 1 2.0568 -9.3331 0.4728 35 1 3.1336 -8.1902 1.3181 36 1 5.3188 -8.6642 -2.5876 37 1 2.8701 -9.8000 -4.0125 38 1 3.1915 -8.0744 -3.7169 39 1 5.2772 -8.2355 -5.0489 40 1 3.8637 -8.7244 -6.0136 41 1 5.7436 -10.3116 -6.3223 42 1 3.5150 -11.1700 -6.3070 43 1 6.8095 -9.9708 -4.1091 44 1 6.4872 -11.6966 -4.4041 45 1 5.8161 -11.0456 -2.1080 46 1 4.4029 -11.5351 -3.0731 47 1 4.7956 -6.7738 -0.3740 48 1 4.5803 -7.1827 -2.0965 49 1 2.3065 -6.2629 -2.0797 50 1 3.4188 -5.0357 -1.4274 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112812306.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:19 Heat of formation + Delta-G solvation = -120.507141 kcal Electronic energy + Delta-G solvation = -30580.261874 eV Core-core repulsion = 26413.959602 eV Total energy + Delta-G solvation = -4166.302273 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.70822 -39.18110 -38.43929 -37.22687 -35.24603 -34.50228 -33.79444 -31.46062 -31.29880 -31.04931 -30.16905 -28.72125 -25.83263 -24.30964 -23.80671 -23.06556 -23.02016 -21.11192 -20.12614 -19.29709 -18.72189 -17.92492 -17.48225 -16.89708 -16.46329 -16.11156 -15.55249 -15.36486 -15.08918 -14.96432 -14.81759 -14.57707 -14.21418 -13.88757 -13.81883 -13.65085 -13.59745 -13.33045 -13.04576 -12.60124 -12.39906 -12.31962 -12.31130 -11.97063 -11.68369 -11.55897 -11.55269 -11.37850 -11.25906 -11.18136 -11.15396 -10.85312 -10.68942 -10.49424 -10.42500 -10.25974 -10.11554 -9.59737 -9.51510 -8.84888 -8.39258 -8.02679 -7.92402 -6.45842 -3.86877 2.57599 2.92365 3.14273 3.23593 3.29106 3.84151 3.90469 3.93556 4.19391 4.25780 4.39148 4.47701 4.70400 4.77182 4.86181 4.91017 4.99773 5.04457 5.06944 5.12866 5.19838 5.20369 5.25691 5.34024 5.39434 5.41392 5.50509 5.52710 5.65963 5.67901 5.72693 5.77933 5.82022 5.85900 5.90208 5.90753 5.97277 6.13159 6.16486 6.21641 6.25169 6.49853 7.12192 7.28092 7.35352 7.41717 7.51085 8.01741 8.14409 8.56818 9.13574 9.49735 10.00854 10.71799 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017838 B = 0.002309 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.301199 B =12125.683735 C =12999.240531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.443 3.557 11 O -0.579 6.579 12 C 0.046 3.954 13 N -0.514 5.514 14 C 0.041 3.959 15 C 0.118 3.882 16 N -0.612 5.612 17 C 0.520 3.480 18 O -0.546 6.546 19 C -0.106 4.106 20 C -0.103 4.103 21 C -0.151 4.151 22 C 0.103 3.897 23 O -0.562 6.562 24 C -0.112 4.112 25 C -0.097 4.097 26 C 0.112 3.888 27 C 0.040 3.960 28 H 0.272 0.728 29 H 0.392 0.608 30 H 0.047 0.953 31 H 0.090 0.910 32 H 0.034 0.966 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.054 0.946 42 H 0.375 0.625 43 H 0.076 0.924 44 H 0.071 0.929 45 H 0.063 0.937 46 H 0.083 0.917 47 H 0.081 0.919 48 H 0.086 0.914 49 H 0.027 0.973 50 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.056 -18.348 -9.464 21.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.199 5.199 10 C 0.229 3.771 11 O -0.463 6.463 12 C -0.085 4.085 13 N -0.239 5.239 14 C -0.088 4.088 15 C -0.004 4.004 16 N -0.346 5.346 17 C 0.309 3.691 18 O -0.423 6.423 19 C -0.127 4.127 20 C -0.141 4.141 21 C -0.188 4.188 22 C 0.045 3.955 23 O -0.367 6.367 24 C -0.150 4.150 25 C -0.134 4.134 26 C -0.010 4.010 27 C -0.089 4.089 28 H 0.082 0.918 29 H 0.225 0.775 30 H 0.065 0.935 31 H 0.108 0.892 32 H 0.052 0.948 33 H 0.105 0.895 34 H 0.110 0.890 35 H 0.093 0.907 36 H 0.109 0.891 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.072 0.928 42 H 0.222 0.778 43 H 0.094 0.906 44 H 0.090 0.910 45 H 0.081 0.919 46 H 0.101 0.899 47 H 0.100 0.900 48 H 0.104 0.896 49 H 0.045 0.955 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 7.131 -18.922 -8.340 21.874 hybrid contribution -1.183 1.299 -1.071 2.058 sum 5.948 -17.623 -9.412 20.846 Atomic orbital electron populations 1.69605 1.05959 1.28218 1.50462 1.25265 0.95626 0.99753 0.97283 0.85864 0.79270 0.80821 0.78369 1.20429 1.20916 1.19384 1.19689 0.93347 0.82164 1.47662 0.87876 1.41882 1.09225 1.04616 1.64225 1.19707 0.88391 0.84498 0.84534 1.90471 1.13647 1.86869 1.55329 1.21853 0.93889 0.91100 1.01639 1.61494 1.25362 1.01471 1.35583 1.22508 0.95424 0.89564 1.01289 1.21675 0.91585 0.98978 0.88196 1.48289 1.47074 1.08935 1.30287 1.20641 0.80705 0.83156 0.84648 1.90663 1.52812 1.29019 1.69853 1.21361 0.98170 1.00255 0.92941 1.21363 0.97986 1.02132 0.92589 1.22250 1.00319 0.98076 0.98185 1.21796 0.88903 0.87231 0.97605 1.86556 1.44757 1.49740 1.55659 1.21561 0.97160 1.02416 0.93829 1.21272 0.99631 0.95822 0.96722 1.22058 0.95845 0.81857 1.01272 1.22722 0.95283 1.01446 0.89418 0.91833 0.77484 0.93489 0.89181 0.94793 0.89530 0.88998 0.90681 0.89083 0.90658 0.91471 0.90614 0.91254 0.92775 0.77843 0.90581 0.90985 0.91855 0.89850 0.90024 0.89564 0.95526 0.86695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.05 13.05 55.50 0.72 -23.32 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 20.57 29.55 -169.99 -5.02 15.55 16 4 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.30 -8.08 9.68 -14.94 -0.14 -8.23 16 8 H 0.10 2.91 7.16 -52.48 -0.38 2.54 16 9 N -0.56 -13.78 5.29 -10.96 -0.06 -13.83 16 10 C 0.44 9.95 7.44 -10.98 -0.08 9.87 16 11 O -0.58 -14.66 13.91 5.55 0.08 -14.58 16 12 C 0.05 0.79 5.45 -4.98 -0.03 0.76 16 13 N -0.51 -8.12 4.37 -235.47 -1.03 -9.15 16 14 C 0.04 0.53 5.62 -3.70 -0.02 0.51 16 15 C 0.12 1.51 6.58 -3.60 -0.02 1.49 16 16 N -0.61 -7.88 3.00 -172.18 -0.52 -8.39 16 17 C 0.52 6.91 6.81 -10.98 -0.07 6.84 16 18 O -0.55 -9.03 15.57 5.56 0.09 -8.94 16 19 C -0.11 -1.07 1.70 -91.77 -0.16 -1.23 16 20 C -0.10 -0.94 4.92 -26.73 -0.13 -1.07 16 21 C -0.15 -1.04 5.64 -26.73 -0.15 -1.19 16 22 C 0.10 0.74 3.77 -26.73 -0.10 0.64 16 23 O -0.56 -4.67 11.97 -35.23 -0.42 -5.10 16 24 C -0.11 -0.87 5.66 -26.76 -0.15 -1.02 16 25 C -0.10 -0.98 4.58 -26.76 -0.12 -1.10 16 26 C 0.11 1.39 6.45 -3.36 -0.02 1.37 16 27 C 0.04 0.59 5.27 -3.46 -0.02 0.57 16 28 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 29 H 0.39 9.23 7.90 -40.82 -0.32 8.91 16 30 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 31 H 0.09 1.39 7.97 -51.93 -0.41 0.98 16 32 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.09 1.00 7.99 -51.93 -0.41 0.58 16 34 H 0.09 1.18 7.09 -51.93 -0.37 0.81 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.09 0.80 6.33 -51.93 -0.33 0.47 16 37 H 0.07 0.80 7.68 -51.93 -0.40 0.40 16 38 H 0.07 0.63 7.90 -51.92 -0.41 0.22 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.37 1.71 9.08 45.56 0.41 2.12 16 43 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.08 1.05 7.41 -51.93 -0.38 0.66 16 47 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 48 H 0.09 0.85 5.25 -51.93 -0.27 0.58 16 49 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 50 H 0.12 2.05 5.77 -51.93 -0.30 1.75 16 LS Contribution 388.49 15.07 5.85 5.85 Total: -1.00 -32.84 388.49 -8.99 -41.83 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -7.36 Total: 11.38 kcal Atomic # 6 Polarization: 10.02 SS G_CDS: -1.32 Total: 8.70 kcal Atomic # 7 Polarization: -53.82 SS G_CDS: -0.88 Total: -54.70 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -0.26 Total: -28.61 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.84 -8.99 -41.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112812306.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.678 kcal (2) G-P(sol) polarization free energy of solvation -32.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds