Wall clock time and date at job start Sat Apr 11 2020 05:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86806 * 119.99591 * 2 1 4 4 H 1.48501 * 109.46741 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47188 * 299.99636 * 3 2 1 6 6 H 1.48495 * 109.47068 * 60.00424 * 3 2 1 7 7 C 1.38944 * 120.00189 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00124 * 179.97438 * 7 2 1 9 9 N 1.37096 * 120.00146 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00290 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99691 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00107 * 179.97438 * 10 9 7 13 13 N 1.46898 * 109.47185 * 179.97438 * 12 10 9 14 14 C 1.46901 * 111.00164 * 170.00257 * 13 12 10 15 15 C 1.53244 * 109.34168 * 187.25939 * 14 13 12 16 16 N 1.47082 * 108.51362 * 306.16732 * 15 14 13 17 17 C 1.34777 * 120.87841 * 231.18383 * 16 15 14 18 18 O 1.21279 * 120.00162 * 0.02562 * 17 16 15 19 19 C 1.50706 * 120.00146 * 180.02562 * 17 16 15 20 20 C 1.52999 * 109.46953 * 180.02562 * 19 17 16 21 21 O 1.42905 * 109.46728 * 180.02562 * 20 19 17 22 22 C 1.42899 * 113.99778 * 179.97438 * 21 20 19 23 23 C 1.52999 * 109.46889 * 179.97438 * 22 21 20 24 24 C 1.53003 * 117.50215 * 243.62115 * 23 22 21 25 25 C 1.53000 * 117.49963 * 174.99838 * 23 22 21 26 26 C 1.47073 * 118.24084 * 51.46351 * 16 15 14 27 27 C 1.46900 * 111.00213 * 294.30305 * 13 12 10 28 28 H 0.97001 * 120.00248 * 359.97438 * 1 2 3 29 29 H 0.97003 * 119.99688 * 359.97438 * 9 7 2 30 30 H 1.09003 * 109.46965 * 60.00085 * 12 10 9 31 31 H 1.09001 * 109.47496 * 299.99884 * 12 10 9 32 32 H 1.08991 * 109.49457 * 67.29573 * 14 13 12 33 33 H 1.09009 * 109.48889 * 307.21061 * 14 13 12 34 34 H 1.08992 * 109.62858 * 186.46205 * 15 14 13 35 35 H 1.08998 * 109.62738 * 65.87322 * 15 14 13 36 36 H 1.09000 * 109.46974 * 60.00144 * 19 17 16 37 37 H 1.09001 * 109.46547 * 300.00234 * 19 17 16 38 38 H 1.09000 * 109.47486 * 60.00062 * 20 19 17 39 39 H 1.09001 * 109.47362 * 299.99339 * 20 19 17 40 40 H 1.08997 * 109.47171 * 299.99768 * 22 21 20 41 41 H 1.08997 * 109.47442 * 59.99964 * 22 21 20 42 42 H 1.09003 * 115.55052 * 29.33340 * 23 22 21 43 43 H 1.09004 * 117.49403 * 359.97438 * 24 23 22 44 44 H 1.08994 * 117.50232 * 145.02224 * 24 23 22 45 45 H 1.08998 * 117.50223 * 214.98211 * 25 23 22 46 46 H 1.09005 * 117.49660 * 0.02562 * 25 23 22 47 47 H 1.09001 * 109.63240 * 68.24892 * 26 16 15 48 48 H 1.09004 * 109.63279 * 188.83105 * 26 16 15 49 49 H 1.08999 * 109.49361 * 292.70500 * 27 13 12 50 50 H 1.08998 * 109.48994 * 52.78564 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 3.7080 1.3465 -0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8893 2.3964 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2103 -3.5577 0.0010 12 6 1.2439 -4.8629 0.0011 13 7 2.1985 -5.9794 0.0004 14 6 1.5143 -7.2573 0.2390 15 6 2.5570 -8.3669 0.4111 16 7 3.4540 -8.3499 -0.7544 17 6 3.7038 -9.4760 -1.4515 18 8 3.1861 -10.5216 -1.1205 19 6 4.6266 -9.4360 -2.6423 20 6 4.7372 -10.8362 -3.2490 21 8 5.6127 -10.7984 -4.3778 22 6 5.7866 -12.0625 -5.0211 23 6 6.7374 -11.9035 -6.2092 24 6 6.1757 -12.1791 -7.6055 25 6 7.1460 -13.1715 -6.9616 26 6 4.0759 -7.0727 -1.1353 27 6 2.9687 -6.0128 -1.2501 28 1 -0.4850 0.8400 0.0004 29 1 0.3534 -2.3906 0.0005 30 1 0.6169 -4.9208 -0.8886 31 1 0.6176 -4.9205 0.8914 32 1 0.8721 -7.4901 -0.6103 33 1 0.9098 -7.1829 1.1431 34 1 2.0566 -9.3331 0.4739 35 1 3.1333 -8.1901 1.3193 36 1 5.6134 -9.0977 -2.3261 37 1 4.2281 -8.7478 -3.3877 38 1 3.7504 -11.1742 -3.5653 39 1 5.1355 -11.5247 -2.5038 40 1 6.2064 -12.7761 -4.3123 41 1 4.8218 -12.4261 -5.3745 42 1 7.4822 -11.1135 -6.1129 43 1 5.1288 -12.4741 -7.6775 44 1 6.5506 -11.5703 -8.4281 45 1 8.1593 -13.2156 -7.3607 46 1 6.7370 -14.1190 -6.6104 47 1 4.7954 -6.7740 -0.3730 48 1 4.5800 -7.1828 -2.0955 49 1 2.3062 -6.2630 -2.0787 50 1 3.4190 -5.0359 -1.4261 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112847155.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:22 Heat of formation + Delta-G solvation = -80.151773 kcal Electronic energy + Delta-G solvation = -28903.927575 eV Core-core repulsion = 24739.375242 eV Total energy + Delta-G solvation = -4164.552333 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.37589 -38.92118 -38.57377 -37.34882 -36.83813 -34.56514 -33.81631 -32.29751 -31.29535 -30.81389 -28.87616 -27.35536 -25.80397 -24.35104 -23.82431 -23.13561 -22.80176 -21.26310 -20.83700 -19.30868 -18.87432 -17.94987 -17.68123 -16.83596 -16.58226 -16.16672 -15.79681 -15.72835 -15.36687 -15.10101 -14.82681 -14.79632 -14.55703 -14.13952 -13.95416 -13.67234 -13.63004 -13.50620 -13.46946 -12.81586 -12.49019 -12.03922 -11.99656 -11.84981 -11.77756 -11.64653 -11.55500 -11.40009 -11.25363 -11.18059 -11.16324 -10.86305 -10.85079 -10.60070 -10.36801 -10.25810 -9.93717 -9.82744 -9.52207 -8.91270 -8.41578 -8.02382 -7.92873 -6.45205 -3.86176 2.46423 2.66126 3.13859 3.21137 3.24984 3.31669 3.50210 3.84692 3.91315 4.19974 4.33102 4.42060 4.45976 4.56361 4.74488 4.79412 4.88898 4.90782 4.97949 5.04378 5.09455 5.17467 5.19650 5.20861 5.23136 5.23370 5.33085 5.39728 5.45228 5.48002 5.52769 5.54887 5.66775 5.68976 5.77008 5.78032 5.83018 5.86336 6.10219 6.14762 6.21947 6.42891 6.86694 7.09154 7.26638 7.32560 7.52117 7.99414 8.02704 8.57403 9.14413 9.50431 10.01419 10.72437 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015807 B = 0.001771 C = 0.001636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.914583 B =15805.151656 C =17112.402943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.563 5.563 10 C 0.443 3.557 11 O -0.579 6.579 12 C 0.046 3.954 13 N -0.515 5.515 14 C 0.041 3.959 15 C 0.119 3.881 16 N -0.610 5.610 17 C 0.520 3.480 18 O -0.552 6.552 19 C -0.140 4.140 20 C 0.080 3.920 21 O -0.388 6.388 22 C 0.095 3.905 23 C -0.154 4.154 24 C -0.178 4.178 25 C -0.175 4.175 26 C 0.112 3.888 27 C 0.038 3.962 28 H 0.271 0.729 29 H 0.392 0.608 30 H 0.048 0.952 31 H 0.090 0.910 32 H 0.035 0.965 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.054 0.946 41 H 0.051 0.949 42 H 0.115 0.885 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.098 0.902 46 H 0.095 0.905 47 H 0.084 0.916 48 H 0.087 0.913 49 H 0.028 0.972 50 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.021 -22.539 -8.911 25.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.429 4.429 8 H 0.122 0.878 9 N -0.199 5.199 10 C 0.228 3.772 11 O -0.463 6.463 12 C -0.085 4.085 13 N -0.240 5.240 14 C -0.088 4.088 15 C -0.004 4.004 16 N -0.343 5.343 17 C 0.309 3.691 18 O -0.431 6.431 19 C -0.180 4.180 20 C 0.003 3.997 21 O -0.308 6.308 22 C 0.019 3.981 23 C -0.172 4.172 24 C -0.215 4.215 25 C -0.212 4.212 26 C -0.010 4.010 27 C -0.090 4.090 28 H 0.081 0.919 29 H 0.225 0.775 30 H 0.066 0.934 31 H 0.108 0.892 32 H 0.053 0.947 33 H 0.105 0.895 34 H 0.111 0.889 35 H 0.095 0.905 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.133 0.867 43 H 0.114 0.886 44 H 0.115 0.885 45 H 0.117 0.883 46 H 0.113 0.887 47 H 0.102 0.898 48 H 0.105 0.895 49 H 0.046 0.954 50 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 7.848 -22.675 -8.410 25.426 hybrid contribution -1.046 0.713 -0.533 1.373 sum 6.802 -21.962 -8.943 24.669 Atomic orbital electron populations 1.69618 1.05960 1.28102 1.50532 1.25266 0.95624 0.99752 0.97272 0.85803 0.79710 0.81134 0.77712 1.19201 1.20788 1.20741 1.19748 0.93400 0.82160 1.47559 0.87794 1.41882 1.09223 1.04617 1.64198 1.19706 0.88397 0.84503 0.84558 1.90475 1.13637 1.86867 1.55326 1.21853 0.93876 0.91076 1.01664 1.61500 1.25393 1.01478 1.35603 1.22510 0.95407 0.89550 1.01375 1.21708 0.91597 0.99156 0.87941 1.48248 1.46958 1.08858 1.30267 1.20357 0.81742 0.83215 0.83802 1.90681 1.52530 1.30113 1.69739 1.21496 1.01072 0.98937 0.96445 1.22102 0.93758 0.96161 0.87667 1.87803 1.67343 1.30955 1.44680 1.21972 0.97511 0.85639 0.92990 1.22154 1.02158 1.00837 0.92078 1.23084 0.99329 1.03042 0.96007 1.22980 1.00505 0.93869 1.03813 1.22067 0.95882 0.81648 1.01440 1.22735 0.95305 1.01529 0.89454 0.91896 0.77489 0.93442 0.89167 0.94718 0.89461 0.88850 0.90494 0.87826 0.87888 0.92477 0.92417 0.92799 0.93116 0.86731 0.88646 0.88518 0.88344 0.88660 0.89761 0.89452 0.95394 0.86542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.06 13.05 55.50 0.72 -23.34 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.63 29.55 -169.99 -5.02 15.60 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.30 -8.10 9.68 -14.94 -0.14 -8.25 16 8 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 9 N -0.56 -13.78 5.29 -10.97 -0.06 -13.83 16 10 C 0.44 9.94 7.44 -10.99 -0.08 9.86 16 11 O -0.58 -14.67 13.91 5.55 0.08 -14.59 16 12 C 0.05 0.79 5.45 -4.98 -0.03 0.76 16 13 N -0.52 -8.05 4.37 -235.46 -1.03 -9.08 16 14 C 0.04 0.51 5.62 -3.70 -0.02 0.49 16 15 C 0.12 1.44 6.60 -3.60 -0.02 1.41 16 16 N -0.61 -7.50 3.00 -172.18 -0.52 -8.01 16 17 C 0.52 6.47 7.71 -10.98 -0.08 6.38 16 18 O -0.55 -8.40 15.43 5.56 0.09 -8.31 16 19 C -0.14 -1.36 4.43 -27.88 -0.12 -1.48 16 20 C 0.08 0.80 5.23 37.16 0.19 1.00 16 21 O -0.39 -4.00 10.34 -35.23 -0.36 -4.37 16 22 C 0.10 0.78 6.22 37.16 0.23 1.01 16 23 C -0.15 -1.14 6.06 -90.62 -0.55 -1.68 16 24 C -0.18 -1.12 10.18 -26.73 -0.27 -1.40 16 25 C -0.17 -1.00 10.25 -26.73 -0.27 -1.27 16 26 C 0.11 1.35 6.53 -3.37 -0.02 1.33 16 27 C 0.04 0.57 5.27 -3.46 -0.02 0.55 16 28 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 29 H 0.39 9.23 7.90 -40.82 -0.32 8.91 16 30 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 31 H 0.09 1.38 7.97 -51.93 -0.41 0.97 16 32 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.09 0.97 7.99 -51.92 -0.41 0.56 16 34 H 0.09 1.13 7.06 -51.93 -0.37 0.76 16 35 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.10 0.89 7.99 -51.93 -0.41 0.47 16 37 H 0.10 0.92 7.67 -51.93 -0.40 0.52 16 38 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 39 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 40 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.05 0.38 7.87 -51.93 -0.41 -0.03 16 42 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.10 0.57 8.03 -51.93 -0.42 0.15 16 44 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 48 H 0.09 0.83 6.02 -51.93 -0.31 0.52 16 49 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 50 H 0.12 2.08 5.77 -51.93 -0.30 1.78 16 LS Contribution 405.77 15.07 6.11 6.11 Total: -1.00 -31.87 405.77 -9.65 -41.52 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -8.35 Total: 9.10 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: -1.31 Total: 9.20 kcal Atomic # 7 Polarization: -53.39 SS G_CDS: -0.88 Total: -54.27 kcal Atomic # 8 Polarization: -27.07 SS G_CDS: -0.20 Total: -27.27 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.87 -9.65 -41.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112847155.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.637 kcal (2) G-P(sol) polarization free energy of solvation -31.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds