Wall clock time and date at job start Sat Apr 11 2020 05:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86798 * 120.00049 * 2 1 4 4 H 1.48506 * 109.47165 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46986 * 299.99356 * 3 2 1 6 6 H 1.48499 * 109.47236 * 59.99389 * 3 2 1 7 7 C 1.38949 * 119.99832 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00037 * 180.02562 * 7 2 1 9 9 N 1.37099 * 120.00047 * 0.02562 * 7 2 1 10 10 C 1.34781 * 119.99858 * 179.97438 * 9 7 2 11 11 O 1.21286 * 119.99762 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99637 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46524 * 180.02562 * 12 10 9 14 14 C 1.46910 * 110.99775 * 170.00168 * 13 12 10 15 15 C 1.53236 * 109.33884 * 187.25141 * 14 13 12 16 16 N 1.47072 * 108.52303 * 306.16919 * 15 14 13 17 17 C 1.34778 * 120.88219 * 231.18500 * 16 15 14 18 18 O 1.21280 * 119.99904 * 0.02562 * 17 16 15 19 19 C 1.50703 * 119.99907 * 179.97438 * 17 16 15 20 20 C 1.53004 * 109.46981 * 180.02562 * 19 17 16 21 21 H 1.08995 * 109.52091 * 55.12498 * 20 19 17 22 22 C 1.53173 * 109.52254 * 175.31759 * 20 19 17 23 23 C 1.53181 * 109.03676 * 176.88918 * 22 20 19 24 24 C 1.53100 * 109.15732 * 303.01504 * 23 22 20 25 25 O 1.42899 * 109.41499 * 57.61360 * 24 23 22 26 26 C 1.42908 * 114.09482 * 298.83529 * 25 24 23 27 27 C 1.47083 * 118.23708 * 51.46003 * 16 15 14 28 28 C 1.46904 * 111.00295 * 294.29995 * 13 12 10 29 29 H 0.96996 * 119.99750 * 0.02562 * 1 2 3 30 30 H 0.96998 * 120.00187 * 0.02562 * 9 7 2 31 31 H 1.09000 * 109.47225 * 60.00747 * 12 10 9 32 32 H 1.09003 * 109.47216 * 300.00189 * 12 10 9 33 33 H 1.09003 * 109.48841 * 67.29114 * 14 13 12 34 34 H 1.09000 * 109.49188 * 307.21256 * 14 13 12 35 35 H 1.08996 * 109.62684 * 186.45747 * 15 14 13 36 36 H 1.09003 * 109.62539 * 65.88428 * 15 14 13 37 37 H 1.09000 * 109.47007 * 60.00334 * 19 17 16 38 38 H 1.08993 * 109.47512 * 299.99930 * 19 17 16 39 39 H 1.08999 * 109.54116 * 296.74609 * 22 20 19 40 40 H 1.08997 * 109.54950 * 56.92837 * 22 20 19 41 41 H 1.08988 * 109.52544 * 62.91818 * 23 22 20 42 42 H 1.08996 * 109.52230 * 183.04989 * 23 22 20 43 43 H 1.08996 * 109.47674 * 177.59246 * 24 23 22 44 44 H 1.09003 * 109.48180 * 297.62701 * 24 23 22 45 45 H 1.08993 * 109.48601 * 301.17873 * 26 25 24 46 46 H 1.09001 * 109.47929 * 181.14345 * 26 25 24 47 47 H 1.08997 * 109.62882 * 68.25052 * 27 16 15 48 48 H 1.09010 * 109.62776 * 188.83139 * 27 16 15 49 49 H 1.09001 * 109.48972 * 292.71152 * 28 13 12 50 50 H 1.09003 * 109.48897 * 52.76386 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3963 -1.2126 6 1 1.8893 2.3965 1.2124 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0005 11 8 3.2101 -3.5578 0.0010 12 6 1.2437 -4.8630 0.0000 13 7 2.1983 -5.9795 0.0007 14 6 1.5136 -7.2574 0.2383 15 6 2.5561 -8.3670 0.4118 16 7 3.4548 -8.3501 -0.7522 17 6 3.7056 -9.4762 -1.4490 18 8 3.1873 -10.5217 -1.1187 19 6 4.6294 -9.4359 -2.6390 20 6 4.7411 -10.8362 -3.2455 21 1 3.7454 -11.2105 -3.4834 22 6 5.5851 -10.7752 -4.5223 23 6 5.7548 -12.1928 -5.0772 24 6 6.3894 -13.0802 -4.0031 25 8 5.5702 -13.0682 -2.8322 26 6 5.4148 -11.7760 -2.2422 27 6 4.0773 -7.0728 -1.1322 28 6 2.9704 -6.0129 -1.2486 29 1 -0.4849 0.8400 -0.0004 30 1 0.3534 -2.3907 -0.0002 31 1 0.6175 -4.9205 -0.8903 32 1 0.6166 -4.9209 0.8897 33 1 0.8727 -7.4901 -0.6121 34 1 0.9078 -7.1830 1.1413 35 1 2.0554 -9.3332 0.4739 36 1 3.1310 -8.1903 1.3209 37 1 5.6157 -9.0972 -2.3220 38 1 4.2313 -8.7481 -3.3849 39 1 5.0827 -10.1519 -5.2620 40 1 6.5632 -10.3524 -4.2930 41 1 4.7802 -12.5951 -5.3530 42 1 6.3993 -12.1653 -5.9558 43 1 6.4733 -14.1004 -4.3775 44 1 7.3810 -12.7004 -3.7570 45 1 6.3935 -11.3791 -1.9730 46 1 4.7966 -11.8567 -1.3480 47 1 4.7956 -6.7741 -0.3688 48 1 4.5829 -7.1830 -2.0917 49 1 2.3091 -6.2631 -2.0782 50 1 3.4206 -5.0358 -1.4242 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113637101.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:24 Heat of formation + Delta-G solvation = -113.951333 kcal Electronic energy + Delta-G solvation = -29927.801812 eV Core-core repulsion = 25761.783820 eV Total energy + Delta-G solvation = -4166.017992 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.60801 -39.45926 -38.61113 -37.29354 -34.70070 -34.56397 -33.81759 -32.43965 -31.31342 -31.11866 -29.14629 -27.71649 -25.65768 -25.26919 -23.97850 -23.79384 -22.83471 -21.10860 -20.36049 -19.32245 -18.84684 -17.93001 -17.25519 -16.61960 -16.31896 -16.25831 -15.86737 -15.57135 -15.11504 -14.95669 -14.87003 -14.65343 -14.52492 -14.20960 -14.04424 -13.85871 -13.65792 -13.22952 -13.00061 -12.91970 -12.68338 -12.52298 -12.02439 -12.00297 -11.66031 -11.57059 -11.52366 -11.34719 -11.28712 -11.18538 -11.17076 -11.03825 -10.87164 -10.57989 -10.38349 -10.27403 -9.79474 -9.66618 -9.53680 -8.89752 -8.42330 -8.03952 -7.94355 -6.46757 -3.87762 2.49186 2.84646 3.12402 3.23570 3.30112 3.67163 3.82887 3.89605 4.18205 4.22049 4.38637 4.47233 4.60207 4.65455 4.78356 4.86028 4.95667 5.01215 5.07885 5.13366 5.17774 5.18873 5.21112 5.26634 5.30890 5.32573 5.38943 5.47187 5.48684 5.56659 5.66047 5.69610 5.70334 5.75809 5.82010 5.85655 5.96590 6.04166 6.08644 6.13682 6.20385 6.43462 6.98786 7.08861 7.25510 7.34668 7.50538 8.01039 8.04608 8.55742 9.12751 9.48790 9.99706 10.70892 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024857 B = 0.001928 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.194288 B =14521.196110 C =15228.644686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.563 5.563 10 C 0.443 3.557 11 O -0.579 6.579 12 C 0.046 3.954 13 N -0.515 5.515 14 C 0.041 3.959 15 C 0.118 3.882 16 N -0.612 5.612 17 C 0.513 3.487 18 O -0.545 6.545 19 C -0.136 4.136 20 C -0.106 4.106 21 H 0.087 0.913 22 C -0.119 4.119 23 C -0.155 4.155 24 C 0.057 3.943 25 O -0.380 6.380 26 C 0.062 3.938 27 C 0.114 3.886 28 C 0.038 3.962 29 H 0.271 0.729 30 H 0.392 0.608 31 H 0.047 0.953 32 H 0.090 0.910 33 H 0.034 0.966 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.091 0.909 44 H 0.048 0.952 45 H 0.043 0.957 46 H 0.112 0.888 47 H 0.083 0.917 48 H 0.085 0.915 49 H 0.027 0.973 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.592 -20.436 -7.572 23.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.428 4.428 8 H 0.122 0.878 9 N -0.199 5.199 10 C 0.228 3.772 11 O -0.464 6.464 12 C -0.085 4.085 13 N -0.240 5.240 14 C -0.088 4.088 15 C -0.005 4.005 16 N -0.345 5.345 17 C 0.302 3.698 18 O -0.423 6.423 19 C -0.176 4.176 20 C -0.125 4.125 21 H 0.106 0.894 22 C -0.157 4.157 23 C -0.193 4.193 24 C -0.020 4.020 25 O -0.299 6.299 26 C -0.014 4.014 27 C -0.009 4.009 28 C -0.090 4.090 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.065 0.935 32 H 0.108 0.892 33 H 0.052 0.948 34 H 0.105 0.895 35 H 0.112 0.888 36 H 0.094 0.906 37 H 0.113 0.887 38 H 0.116 0.884 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.109 0.891 44 H 0.066 0.934 45 H 0.061 0.939 46 H 0.130 0.870 47 H 0.101 0.899 48 H 0.103 0.897 49 H 0.045 0.955 50 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 8.247 -20.906 -6.933 23.518 hybrid contribution -0.800 1.306 -0.800 1.728 sum 7.447 -19.599 -7.733 22.347 Atomic orbital electron populations 1.69620 1.05957 1.28117 1.50492 1.25277 0.95639 0.99778 0.97283 0.85799 0.79692 0.81116 0.77725 1.19204 1.20780 1.20733 1.19743 0.93381 0.82148 1.47572 0.87805 1.41887 1.09235 1.04626 1.64175 1.19706 0.88390 0.84503 0.84557 1.90470 1.13649 1.86870 1.55368 1.21855 0.93884 0.91076 1.01663 1.61506 1.25312 1.01503 1.35635 1.22511 0.95442 0.89541 1.01342 1.21692 0.91583 0.99131 0.88057 1.48301 1.46909 1.08907 1.30422 1.20664 0.81981 0.83125 0.84050 1.90658 1.52186 1.29906 1.69545 1.21725 1.00297 0.99089 0.96483 1.21557 1.01285 0.94124 0.95557 0.89426 1.21666 1.00221 0.96949 0.96847 1.22176 1.02310 0.95976 0.98838 1.22582 0.93200 1.00410 0.85841 1.87981 1.70579 1.29400 1.41921 1.22866 0.99259 0.82899 0.96412 1.22026 0.95847 0.81822 1.01222 1.22728 0.95300 1.01488 0.89483 0.91882 0.77480 0.93453 0.89168 0.94750 0.89503 0.88827 0.90606 0.88666 0.88429 0.91238 0.91624 0.90983 0.90876 0.89123 0.93379 0.93875 0.86985 0.89890 0.89694 0.95479 0.86617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.98 13.05 55.50 0.72 -23.25 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 20.52 29.55 -169.99 -5.02 15.50 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.30 -8.05 9.68 -14.93 -0.14 -8.20 16 8 H 0.10 2.93 7.16 -52.49 -0.38 2.56 16 9 N -0.56 -13.72 5.29 -10.96 -0.06 -13.77 16 10 C 0.44 9.89 7.44 -10.98 -0.08 9.80 16 11 O -0.58 -14.58 13.91 5.55 0.08 -14.50 16 12 C 0.05 0.78 5.45 -4.97 -0.03 0.76 16 13 N -0.51 -7.98 4.37 -235.45 -1.03 -9.01 16 14 C 0.04 0.51 5.62 -3.70 -0.02 0.49 16 15 C 0.12 1.42 6.60 -3.61 -0.02 1.39 16 16 N -0.61 -7.29 3.00 -172.19 -0.52 -7.81 16 17 C 0.51 6.09 7.44 -10.98 -0.08 6.00 16 18 O -0.54 -8.01 13.42 5.56 0.07 -7.94 16 19 C -0.14 -1.17 3.55 -27.88 -0.10 -1.27 16 20 C -0.11 -0.97 2.04 -90.48 -0.18 -1.15 16 21 H 0.09 0.96 7.96 -51.93 -0.41 0.55 16 22 C -0.12 -0.84 5.31 -26.55 -0.14 -0.98 16 23 C -0.16 -1.07 6.14 -26.59 -0.16 -1.23 16 24 C 0.06 0.44 6.84 37.21 0.25 0.70 16 25 O -0.38 -4.30 10.77 -35.23 -0.38 -4.68 16 26 C 0.06 0.65 5.84 37.21 0.22 0.86 16 27 C 0.11 1.32 6.53 -3.37 -0.02 1.30 16 28 C 0.04 0.56 5.27 -3.46 -0.02 0.54 16 29 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 30 H 0.39 9.19 7.90 -40.82 -0.32 8.87 16 31 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 32 H 0.09 1.38 7.97 -51.93 -0.41 0.97 16 33 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.09 0.97 7.99 -51.93 -0.41 0.56 16 35 H 0.09 1.13 7.06 -51.93 -0.37 0.76 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.10 0.67 7.99 -51.93 -0.41 0.26 16 38 H 0.10 0.72 7.67 -51.93 -0.40 0.32 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.54 8.14 -51.94 -0.42 0.12 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.11 1.40 6.01 -51.93 -0.31 1.09 16 47 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.08 0.75 6.02 -51.92 -0.31 0.44 16 49 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.12 2.03 5.76 -51.93 -0.30 1.73 16 LS Contribution 389.41 15.07 5.87 5.87 Total: -1.00 -31.82 389.41 -9.14 -40.97 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -8.25 Total: 9.14 kcal Atomic # 6 Polarization: 10.12 SS G_CDS: -0.63 Total: 9.49 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: -0.88 Total: -53.85 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -0.23 Total: -27.12 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.82 -9.14 -40.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113637101.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.982 kcal (2) G-P(sol) polarization free energy of solvation -31.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds