Wall clock time and date at job start Sat Apr 11 2020 05:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50695 * 120.00081 * 2 1 4 4 N 1.46501 * 109.47419 * 121.94953 * 3 2 1 5 5 C 1.37845 * 127.13890 * 270.64647 * 4 3 2 6 6 C 1.46876 * 126.49250 * 0.02562 * 5 4 3 7 7 N 1.33081 * 120.33965 * 0.02562 * 6 5 4 8 8 C 1.31464 * 121.63186 * 179.73041 * 7 6 5 9 9 C 1.38856 * 122.19290 * 0.52863 * 8 7 6 10 10 C 1.36708 * 120.45332 * 359.76718 * 9 8 7 11 11 C 1.41281 * 118.37637 * 359.97421 * 10 9 8 12 12 C 1.40648 * 120.98851 * 180.02562 * 11 10 9 13 13 H 1.08005 * 120.00417 * 149.69461 * 12 11 10 14 14 C 1.39991 * 120.00162 * 329.69254 * 12 11 10 15 15 N 1.30827 * 119.99920 * 348.85827 * 14 12 11 16 16 Si 1.86808 * 120.00174 * 168.85808 * 14 12 11 17 17 H 1.48492 * 109.46950 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47061 * 120.00067 * 16 14 12 19 19 H 1.48500 * 109.47054 * 239.99974 * 16 14 12 20 20 N 1.31827 * 107.01500 * 180.27762 * 5 4 3 21 21 N 1.28522 * 109.83851 * 359.74087 * 20 5 4 22 22 C 1.31871 * 110.07937 * 359.97438 * 21 20 5 23 23 N 1.37890 * 126.32790 * 180.02562 * 22 21 20 24 24 C 1.46896 * 111.00030 * 67.64963 * 23 22 21 25 25 C 1.46897 * 110.99976 * 303.69125 * 23 22 21 26 26 C 1.53006 * 109.47019 * 189.99861 * 25 23 22 27 27 C 1.53002 * 117.51724 * 116.28771 * 26 25 23 28 28 C 1.53002 * 117.49797 * 184.91759 * 26 25 23 29 29 H 1.08001 * 119.99860 * 359.97438 * 1 2 3 30 30 H 1.07999 * 119.99946 * 180.02562 * 1 2 3 31 31 H 1.08001 * 119.99860 * 180.02562 * 2 1 3 32 32 H 1.09001 * 109.47233 * 1.94965 * 3 2 1 33 33 H 1.09002 * 109.47128 * 241.95003 * 3 2 1 34 34 H 1.07995 * 118.90744 * 180.29742 * 8 7 6 35 35 H 1.07998 * 119.77803 * 179.73870 * 9 8 7 36 36 H 1.08001 * 120.81501 * 179.97438 * 10 9 8 37 37 H 0.97004 * 119.99714 * 179.97438 * 15 14 12 38 38 H 1.09000 * 109.46899 * 289.56543 * 24 23 22 39 39 H 1.09001 * 109.47000 * 49.56221 * 24 23 22 40 40 H 1.08991 * 109.47382 * 169.56445 * 24 23 22 41 41 H 1.09007 * 109.46745 * 70.00361 * 25 23 22 42 42 H 1.08994 * 109.47321 * 310.00094 * 25 23 22 43 43 H 1.08993 * 115.54917 * 330.58676 * 26 25 23 44 44 H 1.08993 * 117.49872 * 214.97096 * 27 26 25 45 45 H 1.08999 * 117.49573 * 359.97438 * 27 26 25 46 46 H 1.09003 * 117.50173 * 359.97438 * 28 26 25 47 47 H 1.08998 * 117.50103 * 144.99996 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9407 1.3626 1.1720 5 6 2.6276 1.8502 2.4227 6 6 1.3391 2.4169 2.8419 7 7 0.3282 2.4983 1.9801 8 6 -0.8373 2.9960 2.3295 9 6 -1.0833 3.4757 3.6091 10 6 -0.1043 3.4397 4.5627 11 6 1.1552 2.9042 4.2121 12 6 2.2013 2.8400 5.1500 13 1 2.9366 2.0515 5.0858 14 6 2.2895 3.7981 6.1668 15 7 1.5402 4.8697 6.1227 16 14 3.4771 3.5467 7.5867 17 1 4.2042 2.2651 7.4027 18 1 4.4510 4.6672 7.6217 19 1 2.7206 3.5083 8.8639 20 7 3.7055 1.7166 3.1698 21 7 4.6501 1.1826 2.4810 22 6 4.2345 0.9419 1.2528 23 7 4.9742 0.3750 0.2365 24 6 5.2754 -1.0331 0.5269 25 6 6.2059 1.1377 -0.0066 26 6 6.8717 0.6357 -1.2895 27 6 6.9895 1.6188 -2.4560 28 6 8.2341 1.2275 -1.6566 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3557 2.1333 0.0350 33 1 2.6637 1.3781 -0.9070 34 1 -1.6287 3.0366 1.5958 35 1 -2.0545 3.8804 3.8527 36 1 -0.2892 3.8115 5.5597 37 1 1.6011 5.5334 6.8275 38 1 5.9964 -1.0897 1.3424 39 1 4.3594 -1.5486 0.8153 40 1 5.6940 -1.5058 -0.3615 41 1 6.8880 1.0036 0.8331 42 1 5.9636 2.1950 -0.1127 43 1 6.6970 -0.4127 -1.5306 44 1 6.8923 1.2170 -3.4645 45 1 6.5923 2.6232 -2.3097 46 1 8.6559 1.9748 -0.9843 47 1 8.9556 0.5684 -2.1392 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121628372.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:40 Heat of formation + Delta-G solvation = 170.876014 kcal Electronic energy + Delta-G solvation = -29613.632486 eV Core-core repulsion = 25799.567206 eV Total energy + Delta-G solvation = -3814.065280 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.94841 -38.42802 -38.01378 -35.95194 -35.50454 -34.20376 -32.15540 -31.08615 -30.66516 -28.26963 -27.66409 -26.42389 -25.71925 -24.85938 -22.65683 -22.47316 -21.68904 -20.67008 -20.27572 -19.82772 -19.35014 -17.44207 -16.98358 -16.23987 -15.86365 -15.60902 -15.39498 -15.17100 -14.51576 -14.32621 -14.18163 -14.08931 -13.92509 -13.52347 -13.07998 -12.80554 -12.52328 -12.32578 -11.97450 -11.90356 -11.83573 -11.61090 -11.57579 -11.51117 -11.32635 -11.22290 -11.00651 -10.87475 -10.51024 -10.46322 -10.20706 -9.92064 -9.69142 -9.50675 -9.40759 -9.16725 -8.89524 -8.47368 -8.32709 -8.11201 -7.24748 -6.98609 -4.56258 1.89959 2.35158 2.64330 2.94157 3.02949 3.07190 3.14151 3.15395 3.67422 3.84198 3.85888 4.13338 4.53771 4.63266 4.81775 4.90551 5.07663 5.16754 5.22958 5.26418 5.37445 5.49196 5.50627 5.51473 5.53235 5.62839 5.69538 5.77361 5.84349 5.89035 5.99173 6.03743 6.08108 6.12434 6.17257 6.24210 6.38175 6.67246 6.70677 6.77960 6.85097 6.85737 6.93868 7.02547 7.08783 7.31078 7.62982 7.67938 7.85183 7.92859 8.43668 8.53701 8.61420 9.35209 9.62155 9.87778 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.010577 B = 0.004038 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2646.548203 B = 6932.931405 C = 8789.138801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.173 4.173 3 C 0.149 3.851 4 N -0.456 5.456 5 C 0.300 3.700 6 C 0.008 3.992 7 N -0.440 5.440 8 C -0.038 4.038 9 C -0.139 4.139 10 C -0.126 4.126 11 C 0.101 3.899 12 C -0.390 4.390 13 H 0.119 0.881 14 C 0.069 3.931 15 N -0.776 5.776 16 Si 0.920 3.080 17 H -0.251 1.251 18 H -0.271 1.271 19 H -0.271 1.271 20 N -0.280 5.280 21 N -0.317 5.317 22 C 0.299 3.701 23 N -0.459 5.459 24 C 0.038 3.962 25 C 0.100 3.900 26 C -0.146 4.146 27 C -0.176 4.176 28 C -0.180 4.180 29 H 0.109 0.891 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.115 0.885 33 H 0.088 0.912 34 H 0.121 0.879 35 H 0.099 0.901 36 H 0.127 0.873 37 H 0.287 0.713 38 H 0.043 0.957 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.057 0.943 42 H 0.075 0.925 43 H 0.110 0.890 44 H 0.092 0.908 45 H 0.093 0.907 46 H 0.094 0.906 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.271 -6.219 -11.076 13.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.192 4.192 3 C 0.027 3.973 4 N -0.148 5.148 5 C 0.039 3.961 6 C -0.131 4.131 7 N -0.149 5.149 8 C -0.202 4.202 9 C -0.160 4.160 10 C -0.152 4.152 11 C 0.093 3.907 12 C -0.418 4.418 13 H 0.136 0.864 14 C -0.152 4.152 15 N -0.399 5.399 16 Si 0.743 3.257 17 H -0.174 1.174 18 H -0.196 1.196 19 H -0.196 1.196 20 N -0.122 5.122 21 N -0.162 5.162 22 C -0.056 4.056 23 N -0.183 5.183 24 C -0.110 4.110 25 C -0.027 4.027 26 C -0.164 4.164 27 C -0.213 4.213 28 C -0.217 4.217 29 H 0.127 0.873 30 H 0.110 0.890 31 H 0.119 0.881 32 H 0.133 0.867 33 H 0.106 0.894 34 H 0.138 0.862 35 H 0.117 0.883 36 H 0.145 0.855 37 H 0.098 0.902 38 H 0.061 0.939 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.075 0.925 42 H 0.093 0.907 43 H 0.128 0.872 44 H 0.111 0.889 45 H 0.112 0.888 46 H 0.112 0.888 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.049 -6.223 -11.059 13.658 hybrid contribution -0.203 0.284 0.917 0.982 sum 4.847 -5.939 -10.142 12.713 Atomic orbital electron populations 1.23929 0.95757 1.02077 0.97175 1.22879 0.96167 0.97478 1.02691 1.20895 0.92730 0.98156 0.85543 1.46217 1.10417 1.46396 1.11758 1.22353 0.95599 0.98078 0.80035 1.18844 0.88800 1.14748 0.90700 1.66779 0.99989 1.12203 1.35973 1.21365 0.94471 1.08842 0.95565 1.21323 0.98830 1.00497 0.95330 1.21365 0.91924 1.02449 0.99432 1.19150 0.92939 0.88789 0.89782 1.20314 1.08159 1.08737 1.04559 0.86360 1.26233 0.96160 0.93948 0.98901 1.69799 1.32687 1.06308 1.31143 0.86025 0.80023 0.80601 0.79037 1.17365 1.19567 1.19620 1.74815 0.96223 1.17901 1.23267 1.74686 1.24255 1.16494 1.00812 1.21853 0.85526 1.05953 0.92288 1.58193 1.19863 1.02966 1.37296 1.22399 1.01386 0.86478 1.00726 1.21685 0.88487 0.97117 0.95436 1.22266 0.99100 0.99061 0.95989 1.23008 1.01871 1.00172 0.96236 1.22971 0.90992 1.03894 1.03876 0.87255 0.88976 0.88104 0.86734 0.89392 0.86153 0.88295 0.85541 0.90208 0.93874 0.91610 0.90605 0.92518 0.90691 0.87249 0.88938 0.88815 0.88753 0.88786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 14.11 29.01 0.41 -1.76 16 2 C -0.17 -2.66 9.85 -36.03 -0.35 -3.01 16 3 C 0.15 2.52 6.06 -5.20 -0.03 2.49 16 4 N -0.46 -9.24 2.82 -116.17 -0.33 -9.57 16 5 C 0.30 7.21 7.75 -153.47 -1.19 6.02 16 6 C 0.01 0.20 6.96 -80.47 -0.56 -0.35 16 7 N -0.44 -9.81 7.34 -8.15 -0.06 -9.87 16 8 C -0.04 -0.80 11.11 -17.48 -0.19 -0.99 16 9 C -0.14 -2.97 9.98 -39.91 -0.40 -3.37 16 10 C -0.13 -3.04 8.71 -38.98 -0.34 -3.38 16 11 C 0.10 2.61 5.70 -104.47 -0.59 2.01 16 12 C -0.39 -10.13 8.11 -38.02 -0.31 -10.43 16 13 H 0.12 3.18 5.77 -52.48 -0.30 2.88 16 14 C 0.07 1.66 5.26 -17.32 -0.09 1.57 16 15 N -0.78 -18.83 11.02 55.55 0.61 -18.21 16 16 Si 0.92 18.64 29.58 -169.99 -5.03 13.61 16 17 H -0.25 -5.22 7.11 56.52 0.40 -4.82 16 18 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 19 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 20 N -0.28 -7.02 9.27 32.50 0.30 -6.72 16 21 N -0.32 -7.17 12.14 30.26 0.37 -6.80 16 22 C 0.30 5.82 6.34 -319.27 -2.03 3.79 16 23 N -0.46 -6.94 4.75 -182.48 -0.87 -7.81 16 24 C 0.04 0.49 9.27 60.06 0.56 1.04 16 25 C 0.10 1.36 5.09 -3.82 -0.02 1.34 16 26 C -0.15 -1.52 5.70 -90.61 -0.52 -2.03 16 27 C -0.18 -1.67 10.18 -26.73 -0.27 -1.94 16 28 C -0.18 -1.62 10.25 -26.73 -0.27 -1.90 16 29 H 0.11 1.64 7.49 -52.49 -0.39 1.24 16 30 H 0.09 1.15 8.06 -52.49 -0.42 0.73 16 31 H 0.10 1.50 8.06 -52.49 -0.42 1.07 16 32 H 0.11 2.06 5.98 -51.93 -0.31 1.75 16 33 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.12 2.13 8.06 -52.49 -0.42 1.71 16 35 H 0.10 1.82 8.06 -52.49 -0.42 1.39 16 36 H 0.13 3.08 6.48 -52.49 -0.34 2.74 16 37 H 0.29 6.26 8.30 -40.82 -0.34 5.93 16 38 H 0.04 0.58 8.05 -51.93 -0.42 0.16 16 39 H 0.07 0.89 8.05 -51.93 -0.42 0.48 16 40 H 0.08 0.75 6.55 -51.93 -0.34 0.41 16 41 H 0.06 0.82 8.06 -51.93 -0.42 0.40 16 42 H 0.07 1.12 7.79 -51.93 -0.40 0.71 16 43 H 0.11 1.06 6.46 -51.93 -0.34 0.72 16 44 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.09 0.94 8.03 -51.93 -0.42 0.52 16 46 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 390.48 15.07 5.88 5.88 Total: -1.00 -28.34 390.48 -11.94 -40.27 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -6.62 Total: 10.13 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -6.20 Total: -10.92 kcal Atomic # 7 Polarization: -59.01 SS G_CDS: 0.03 Total: -58.98 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -28.34 -11.94 -40.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121628372.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.150 kcal (2) G-P(sol) polarization free energy of solvation -28.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 182.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 170.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds