Wall clock time and date at job start Sat Apr 11 2020 05:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50695 * 120.00081 * 2 1 4 4 N 1.46501 * 109.47419 * 121.94953 * 3 2 1 5 5 C 1.37845 * 127.13890 * 270.64647 * 4 3 2 6 6 C 1.46876 * 126.49250 * 0.02562 * 5 4 3 7 7 N 1.33081 * 120.33965 * 0.02562 * 6 5 4 8 8 C 1.31464 * 121.63186 * 179.73041 * 7 6 5 9 9 C 1.38856 * 122.19290 * 0.52863 * 8 7 6 10 10 C 1.36708 * 120.45332 * 359.76718 * 9 8 7 11 11 C 1.41281 * 118.37637 * 359.97421 * 10 9 8 12 12 C 1.40648 * 120.98851 * 180.02562 * 11 10 9 13 13 H 1.08005 * 120.00417 * 149.69461 * 12 11 10 14 14 C 1.39991 * 120.00162 * 329.69254 * 12 11 10 15 15 N 1.30827 * 119.99920 * 348.85827 * 14 12 11 16 16 Si 1.86808 * 120.00174 * 168.85808 * 14 12 11 17 17 H 1.48492 * 109.46950 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47061 * 120.00067 * 16 14 12 19 19 H 1.48500 * 109.47054 * 239.99974 * 16 14 12 20 20 N 1.31827 * 107.01500 * 180.27762 * 5 4 3 21 21 N 1.28522 * 109.83851 * 359.74087 * 20 5 4 22 22 C 1.31871 * 110.07937 * 359.97438 * 21 20 5 23 23 N 1.37890 * 126.32790 * 180.02562 * 22 21 20 24 24 C 1.46896 * 111.00030 * 67.64963 * 23 22 21 25 25 C 1.46897 * 110.99976 * 303.69125 * 23 22 21 26 26 C 1.53006 * 109.47019 * 189.99861 * 25 23 22 27 27 C 1.53002 * 117.51724 * 116.28771 * 26 25 23 28 28 C 1.53002 * 117.49797 * 184.91759 * 26 25 23 29 29 H 1.08001 * 119.99860 * 359.97438 * 1 2 3 30 30 H 1.07999 * 119.99946 * 180.02562 * 1 2 3 31 31 H 1.08001 * 119.99860 * 180.02562 * 2 1 3 32 32 H 1.09001 * 109.47233 * 1.94965 * 3 2 1 33 33 H 1.09002 * 109.47128 * 241.95003 * 3 2 1 34 34 H 1.07995 * 118.90744 * 180.29742 * 8 7 6 35 35 H 1.07998 * 119.77803 * 179.73870 * 9 8 7 36 36 H 1.08001 * 120.81501 * 179.97438 * 10 9 8 37 37 H 0.97004 * 119.99714 * 179.97438 * 15 14 12 38 38 H 1.09000 * 109.46899 * 289.56543 * 24 23 22 39 39 H 1.09001 * 109.47000 * 49.56221 * 24 23 22 40 40 H 1.08991 * 109.47382 * 169.56445 * 24 23 22 41 41 H 1.09007 * 109.46745 * 70.00361 * 25 23 22 42 42 H 1.08994 * 109.47321 * 310.00094 * 25 23 22 43 43 H 1.08993 * 115.54917 * 330.58676 * 26 25 23 44 44 H 1.08993 * 117.49872 * 214.97096 * 27 26 25 45 45 H 1.08999 * 117.49573 * 359.97438 * 27 26 25 46 46 H 1.09003 * 117.50173 * 359.97438 * 28 26 25 47 47 H 1.08998 * 117.50103 * 144.99996 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9407 1.3626 1.1720 5 6 2.6276 1.8502 2.4227 6 6 1.3391 2.4169 2.8419 7 7 0.3282 2.4983 1.9801 8 6 -0.8373 2.9960 2.3295 9 6 -1.0833 3.4757 3.6091 10 6 -0.1043 3.4397 4.5627 11 6 1.1552 2.9042 4.2121 12 6 2.2013 2.8400 5.1500 13 1 2.9366 2.0515 5.0858 14 6 2.2895 3.7981 6.1668 15 7 1.5402 4.8697 6.1227 16 14 3.4771 3.5467 7.5867 17 1 4.2042 2.2651 7.4027 18 1 4.4510 4.6672 7.6217 19 1 2.7206 3.5083 8.8639 20 7 3.7055 1.7166 3.1698 21 7 4.6501 1.1826 2.4810 22 6 4.2345 0.9419 1.2528 23 7 4.9742 0.3750 0.2365 24 6 5.2754 -1.0331 0.5269 25 6 6.2059 1.1377 -0.0066 26 6 6.8717 0.6357 -1.2895 27 6 6.9895 1.6188 -2.4560 28 6 8.2341 1.2275 -1.6566 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3557 2.1333 0.0350 33 1 2.6637 1.3781 -0.9070 34 1 -1.6287 3.0366 1.5958 35 1 -2.0545 3.8804 3.8527 36 1 -0.2892 3.8115 5.5597 37 1 1.6011 5.5334 6.8275 38 1 5.9964 -1.0897 1.3424 39 1 4.3594 -1.5486 0.8153 40 1 5.6940 -1.5058 -0.3615 41 1 6.8880 1.0036 0.8331 42 1 5.9636 2.1950 -0.1127 43 1 6.6970 -0.4127 -1.5306 44 1 6.8923 1.2170 -3.4645 45 1 6.5923 2.6232 -2.3097 46 1 8.6559 1.9748 -0.9843 47 1 8.9556 0.5684 -2.1392 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121628372.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:39 Heat of formation + Delta-G solvation = 159.138052 kcal Electronic energy + Delta-G solvation = -29614.141482 eV Core-core repulsion = 25799.567206 eV Total energy + Delta-G solvation = -3814.574277 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.60090 -39.92058 -39.34147 -37.09090 -36.84707 -35.98394 -33.59201 -32.78278 -32.46231 -29.91557 -28.73710 -27.89723 -27.44863 -26.13038 -24.39847 -23.42907 -23.19416 -21.95299 -21.79184 -21.07383 -20.68097 -19.26914 -18.40889 -17.56411 -17.48104 -17.08825 -16.89195 -16.47381 -16.01818 -15.74259 -15.59405 -15.50565 -15.00918 -14.65700 -14.51611 -14.38276 -14.14387 -13.77824 -13.47336 -13.41386 -13.28834 -13.12544 -12.92304 -12.82698 -12.55203 -12.36398 -12.35091 -12.25176 -12.12850 -11.65300 -11.48203 -11.27710 -11.24506 -10.97171 -10.91886 -10.60049 -10.40707 -10.12551 -9.91278 -9.77987 -9.03456 -8.76261 -6.43994 0.16261 0.92215 1.03801 1.27045 1.35326 1.48918 1.50938 1.71642 2.07871 2.18162 2.68722 2.72868 3.02056 3.43484 3.68225 3.73326 3.90488 3.96027 4.02897 4.06911 4.13171 4.18602 4.27529 4.29741 4.44100 4.52644 4.58363 4.61922 4.70375 4.74413 4.80165 4.82723 4.84674 4.88751 4.95653 4.99546 5.05840 5.18086 5.21988 5.26634 5.28967 5.31859 5.64460 5.67725 5.70339 5.84009 5.86375 5.90759 6.09004 6.37257 6.57795 6.65665 6.78668 7.56757 7.90764 8.12631 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.010577 B = 0.004038 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2646.548203 B = 6932.931405 C = 8789.138801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.186 4.186 3 C 0.148 3.852 4 N -0.453 5.453 5 C 0.276 3.724 6 C -0.012 4.012 7 N -0.435 5.435 8 C -0.031 4.031 9 C -0.133 4.133 10 C -0.146 4.146 11 C 0.074 3.926 12 C -0.425 4.425 13 H 0.098 0.902 14 C 0.038 3.962 15 N -0.802 5.802 16 Si 0.979 3.021 17 H -0.267 1.267 18 H -0.266 1.266 19 H -0.251 1.251 20 N -0.313 5.313 21 N -0.352 5.352 22 C 0.323 3.677 23 N -0.452 5.452 24 C 0.038 3.962 25 C 0.103 3.897 26 C -0.150 4.150 27 C -0.174 4.174 28 C -0.170 4.170 29 H 0.104 0.896 30 H 0.115 0.885 31 H 0.108 0.892 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.163 0.837 35 H 0.135 0.865 36 H 0.118 0.882 37 H 0.296 0.704 38 H 0.034 0.966 39 H 0.058 0.942 40 H 0.115 0.885 41 H 0.044 0.956 42 H 0.055 0.945 43 H 0.126 0.874 44 H 0.110 0.890 45 H 0.083 0.917 46 H 0.088 0.912 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.846 -7.202 -13.289 15.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.205 4.205 3 C 0.027 3.973 4 N -0.144 5.144 5 C 0.014 3.986 6 C -0.150 4.150 7 N -0.144 5.144 8 C -0.196 4.196 9 C -0.153 4.153 10 C -0.172 4.172 11 C 0.067 3.933 12 C -0.453 4.453 13 H 0.116 0.884 14 C -0.180 4.180 15 N -0.426 5.426 16 Si 0.800 3.200 17 H -0.191 1.191 18 H -0.190 1.190 19 H -0.175 1.175 20 N -0.155 5.155 21 N -0.197 5.197 22 C -0.034 4.034 23 N -0.177 5.177 24 C -0.109 4.109 25 C -0.024 4.024 26 C -0.169 4.169 27 C -0.211 4.211 28 C -0.207 4.207 29 H 0.123 0.877 30 H 0.133 0.867 31 H 0.126 0.874 32 H 0.121 0.879 33 H 0.125 0.875 34 H 0.180 0.820 35 H 0.153 0.847 36 H 0.136 0.864 37 H 0.107 0.893 38 H 0.053 0.947 39 H 0.077 0.923 40 H 0.134 0.866 41 H 0.062 0.938 42 H 0.073 0.927 43 H 0.143 0.857 44 H 0.128 0.872 45 H 0.102 0.898 46 H 0.107 0.893 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.617 -7.207 -13.290 15.807 hybrid contribution -0.154 0.561 1.385 1.502 sum 4.463 -6.646 -11.904 14.346 Atomic orbital electron populations 1.24094 0.95413 1.02945 0.95233 1.22825 0.96549 0.96784 1.04370 1.21077 0.92593 0.98811 0.84815 1.46417 1.10970 1.45523 1.11524 1.22334 0.95452 0.99375 0.81471 1.19059 0.89800 1.15292 0.90839 1.66898 1.00000 1.12331 1.35187 1.22145 0.94755 1.06440 0.96247 1.21711 0.99622 0.99145 0.94848 1.21399 0.92257 1.03581 0.99952 1.19495 0.93709 0.89579 0.90509 1.20269 1.08744 1.09700 1.06595 0.88372 1.26830 0.97492 0.93322 1.00376 1.69794 1.33847 1.06775 1.32152 0.85179 0.78201 0.79551 0.77077 1.19100 1.19031 1.17472 1.74724 0.97168 1.18817 1.24817 1.74609 1.24435 1.18285 1.02410 1.22357 0.85445 1.03385 0.92191 1.58544 1.20262 1.04036 1.34884 1.22513 1.01058 0.84897 1.02419 1.21670 0.87576 0.96125 0.97001 1.22162 1.00173 0.99931 0.94594 1.23073 1.01892 0.99430 0.96727 1.23060 0.90789 1.03638 1.03254 0.87738 0.86696 0.87440 0.87865 0.87535 0.81966 0.84706 0.86424 0.89266 0.94696 0.92305 0.86626 0.93812 0.92655 0.85664 0.87152 0.89843 0.89340 0.86667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.67 14.11 67.78 0.96 -2.72 16 2 C -0.19 -5.43 9.85 25.64 0.25 -5.18 16 3 C 0.15 4.89 6.06 85.63 0.52 5.41 16 4 N -0.45 -18.63 2.82 -521.45 -1.47 -20.10 16 5 C 0.28 13.80 7.75 135.67 1.05 14.85 16 6 C -0.01 -0.61 6.96 43.39 0.30 -0.30 16 7 N -0.44 -19.12 7.34 -179.70 -1.32 -20.44 16 8 C -0.03 -1.24 11.11 84.90 0.94 -0.29 16 9 C -0.13 -5.48 9.98 22.06 0.22 -5.26 16 10 C -0.15 -7.15 8.71 22.66 0.20 -6.95 16 11 C 0.07 3.99 5.70 -19.77 -0.11 3.87 16 12 C -0.42 -23.33 8.11 23.28 0.19 -23.14 16 13 H 0.10 5.68 5.77 -2.91 -0.02 5.66 16 14 C 0.04 1.91 5.26 85.27 0.45 2.36 16 15 N -0.80 -40.02 11.02 21.84 0.24 -39.78 16 16 Si 0.98 39.67 29.58 68.60 2.03 41.70 16 17 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 18 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 19 H -0.25 -9.23 7.11 99.48 0.71 -8.53 16 20 N -0.31 -16.61 9.27 -51.08 -0.47 -17.08 16 21 N -0.35 -16.66 12.14 -58.19 -0.71 -17.37 16 22 C 0.32 12.76 6.34 260.25 1.65 14.41 16 23 N -0.45 -13.35 4.75 -731.24 -3.47 -16.83 16 24 C 0.04 0.92 9.27 127.69 1.18 2.11 16 25 C 0.10 2.77 5.09 86.31 0.44 3.21 16 26 C -0.15 -2.80 5.70 -10.79 -0.06 -2.86 16 27 C -0.17 -2.91 10.18 30.60 0.31 -2.60 16 28 C -0.17 -2.67 10.25 30.60 0.31 -2.36 16 29 H 0.10 2.88 7.49 -2.91 -0.02 2.86 16 30 H 0.11 2.51 8.06 -2.91 -0.02 2.48 16 31 H 0.11 2.99 8.06 -2.91 -0.02 2.97 16 32 H 0.10 3.65 5.98 -2.39 -0.01 3.64 16 33 H 0.11 3.05 8.14 -2.39 -0.02 3.03 16 34 H 0.16 5.04 8.06 -2.91 -0.02 5.02 16 35 H 0.14 4.53 8.06 -2.91 -0.02 4.51 16 36 H 0.12 5.88 6.48 -2.91 -0.02 5.87 16 37 H 0.30 13.18 8.30 -92.71 -0.77 12.41 16 38 H 0.03 0.92 8.05 -2.39 -0.02 0.90 16 39 H 0.06 1.52 8.05 -2.39 -0.02 1.51 16 40 H 0.12 1.91 6.55 -2.39 -0.02 1.90 16 41 H 0.04 1.28 8.06 -2.38 -0.02 1.26 16 42 H 0.05 1.68 7.79 -2.39 -0.02 1.66 16 43 H 0.13 1.96 6.46 -2.39 -0.02 1.95 16 44 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.08 1.57 8.03 -2.39 -0.02 1.55 16 46 H 0.09 1.50 8.14 -2.39 -0.02 1.49 16 47 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -65.38 390.48 4.61 -60.77 By element: Atomic # 1 Polarization: 33.58 SS G_CDS: 0.98 Total: 34.57 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: 8.80 Total: -5.44 kcal Atomic # 7 Polarization: -124.39 SS G_CDS: -7.20 Total: -131.59 kcal Atomic # 14 Polarization: 39.67 SS G_CDS: 2.03 Total: 41.70 kcal Total: -65.38 4.61 -60.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121628372.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 219.904 kcal (2) G-P(sol) polarization free energy of solvation -65.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds