Wall clock time and date at job start Sat Apr 11 2020 05:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50700 * 119.99876 * 2 1 4 4 N 1.46499 * 109.47385 * 124.99776 * 3 2 1 5 5 C 1.37834 * 127.13962 * 89.97037 * 4 3 2 6 6 C 1.46885 * 126.49050 * 0.04296 * 5 4 3 7 7 N 1.33078 * 120.34053 * 359.97438 * 6 5 4 8 8 C 1.31471 * 121.63229 * 179.97438 * 7 6 5 9 9 C 1.38861 * 122.19223 * 359.97438 * 8 7 6 10 10 C 1.36702 * 120.45316 * 0.02562 * 9 8 7 11 11 C 1.41277 * 118.37739 * 359.97438 * 10 9 8 12 12 C 1.40656 * 120.98827 * 179.97438 * 11 10 9 13 13 H 1.08004 * 119.99952 * 149.80778 * 12 11 10 14 14 C 1.39991 * 119.99980 * 329.81051 * 12 11 10 15 15 N 1.30824 * 119.99820 * 349.81955 * 14 12 11 16 16 Si 1.86796 * 120.00104 * 169.82281 * 14 12 11 17 17 H 1.48500 * 109.47167 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47434 * 119.99704 * 16 14 12 19 19 H 1.48501 * 109.47243 * 239.99859 * 16 14 12 20 20 N 1.31824 * 107.01949 * 180.30109 * 5 4 3 21 21 N 1.28520 * 109.83788 * 359.56162 * 20 5 4 22 22 C 1.31873 * 110.07572 * 0.45202 * 21 20 5 23 23 N 1.37891 * 126.33208 * 179.70453 * 22 21 20 24 24 C 1.47437 * 111.00077 * 239.90299 * 23 22 21 25 25 C 1.54327 * 107.23425 * 123.25462 * 24 23 22 26 26 C 1.55134 * 103.01568 * 22.28208 * 25 24 23 27 27 H 1.08999 * 110.99094 * 82.43982 * 26 25 24 28 28 C 1.53004 * 110.99158 * 206.25475 * 26 25 24 29 29 C 1.47841 * 110.99552 * 0.74578 * 23 22 21 30 30 H 1.08003 * 119.99798 * 180.02562 * 1 2 3 31 31 H 1.07998 * 120.00151 * 0.02562 * 1 2 3 32 32 H 1.07998 * 120.00151 * 179.97438 * 2 1 3 33 33 H 1.09002 * 109.47328 * 4.99740 * 3 2 1 34 34 H 1.09003 * 109.46589 * 244.99816 * 3 2 1 35 35 H 1.08005 * 118.90317 * 180.02562 * 8 7 6 36 36 H 1.07999 * 119.76785 * 180.02562 * 9 8 7 37 37 H 1.07997 * 120.81071 * 179.97438 * 10 9 8 38 38 H 0.97004 * 119.99610 * 180.02562 * 15 14 12 39 39 H 1.09005 * 109.88986 * 242.65687 * 24 23 22 40 40 H 1.08999 * 109.89182 * 3.68714 * 24 23 22 41 41 H 1.09004 * 110.70589 * 140.66346 * 25 24 23 42 42 H 1.08997 * 110.70286 * 263.90280 * 25 24 23 43 43 H 1.09002 * 109.46729 * 58.54895 * 28 26 25 44 44 H 1.09001 * 109.47449 * 178.54856 * 28 26 25 45 45 H 1.09001 * 109.46930 * 298.54586 * 28 26 25 46 46 H 1.09000 * 110.37585 * 332.46342 * 29 23 22 47 47 H 1.09004 * 110.37826 * 94.80771 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1314 5 6 4.3015 0.8967 1.1441 6 6 5.0385 0.3121 0.0160 7 7 4.4465 0.1570 -1.1657 8 6 5.0822 -0.3628 -2.1924 9 6 6.4040 -0.7802 -2.1100 10 6 7.0963 -0.6614 -0.9373 11 6 6.4340 -0.1055 0.1800 12 6 7.0938 0.0418 1.4135 13 1 6.8211 0.8476 2.0789 14 6 8.1038 -0.8561 1.7786 15 7 8.3000 -1.9414 1.0750 16 14 9.1715 -0.5046 3.2705 17 1 8.7504 0.7779 3.8895 18 1 9.0207 -1.6040 4.2574 19 1 10.5926 -0.4078 2.8506 20 7 4.7638 1.0994 2.3619 21 7 3.8499 1.6310 3.0925 22 6 2.7454 1.7917 2.3902 23 7 1.5584 2.3258 2.8452 24 6 0.4584 1.3520 2.7202 25 6 -0.1521 1.1688 4.1257 26 6 0.2635 2.4709 4.8596 27 1 -0.4188 3.2873 4.6229 28 6 0.3430 2.2467 6.3710 29 6 1.6690 2.7317 4.2626 30 1 -0.5400 -0.9354 0.0004 31 1 -0.5400 0.9353 -0.0004 32 1 1.8501 -0.9353 0.0004 33 1 1.3586 2.1317 0.0895 34 1 2.6213 1.4025 -0.9314 35 1 4.5591 -0.4680 -3.1315 36 1 6.8883 -1.2016 -2.9785 37 1 8.1244 -0.9845 -0.8666 38 1 8.9996 -2.5638 1.3283 39 1 -0.2981 1.7331 2.0341 40 1 0.8451 0.4008 2.3544 41 1 -1.2376 1.0892 4.0669 42 1 0.2734 0.2954 4.6197 43 1 1.0624 1.4558 6.5836 44 1 0.6613 3.1680 6.8588 45 1 -0.6379 1.9564 6.7473 46 1 2.4168 2.1253 4.7737 47 1 1.9221 3.7894 4.3359 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121730892.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:44 Heat of formation + Delta-G solvation = 141.811631 kcal Electronic energy + Delta-G solvation = -30021.218720 eV Core-core repulsion = 26205.893113 eV Total energy + Delta-G solvation = -3815.325607 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.03464 -39.04980 -38.03951 -35.78886 -34.21728 -33.47242 -32.32182 -30.95311 -30.66799 -29.76658 -27.69498 -26.55879 -25.86185 -25.66325 -22.89298 -22.19371 -21.52403 -20.61991 -20.19929 -19.83527 -19.36311 -17.45021 -17.02414 -16.44176 -15.81012 -15.54395 -15.31502 -15.23036 -14.55366 -14.16301 -13.96956 -13.90284 -13.43113 -13.35818 -13.30218 -12.88243 -12.77069 -12.37602 -12.31344 -12.09853 -11.93240 -11.70383 -11.49370 -11.47901 -11.35822 -11.13878 -11.07333 -10.95119 -10.78318 -10.68315 -10.42996 -9.97674 -9.67105 -9.52346 -9.44590 -9.34216 -9.20211 -8.48780 -8.27456 -7.94709 -7.13539 -6.94680 -4.54966 1.91840 2.14974 2.64845 2.94241 3.03809 3.08795 3.15238 3.16042 3.84125 3.86289 4.12401 4.44318 4.53664 4.54962 4.80379 4.96746 5.03946 5.16265 5.18302 5.34197 5.36076 5.43984 5.51391 5.53800 5.59843 5.64350 5.74470 5.79748 5.84390 5.91548 5.97209 5.98677 6.04417 6.12602 6.18379 6.30836 6.38757 6.51857 6.63281 6.67173 6.72597 6.83060 6.94252 6.96202 7.04910 7.30024 7.63820 7.67243 7.85050 7.91798 8.45033 8.55043 8.62472 9.35818 9.67251 9.89156 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.011158 B = 0.004317 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2508.901911 B = 6483.921245 C = 8521.330250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.147 4.147 3 C 0.143 3.857 4 N -0.472 5.472 5 C 0.293 3.707 6 C 0.010 3.990 7 N -0.446 5.446 8 C -0.038 4.038 9 C -0.140 4.140 10 C -0.125 4.125 11 C 0.100 3.900 12 C -0.390 4.390 13 H 0.119 0.881 14 C 0.068 3.932 15 N -0.778 5.778 16 Si 0.920 3.080 17 H -0.250 1.250 18 H -0.271 1.271 19 H -0.271 1.271 20 N -0.275 5.275 21 N -0.328 5.328 22 C 0.318 3.682 23 N -0.444 5.444 24 C 0.040 3.960 25 C -0.136 4.136 26 C -0.102 4.102 27 H 0.084 0.916 28 C -0.141 4.141 29 C 0.059 3.941 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.114 0.886 33 H 0.084 0.916 34 H 0.125 0.875 35 H 0.121 0.879 36 H 0.099 0.901 37 H 0.128 0.872 38 H 0.287 0.713 39 H 0.083 0.917 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.056 0.944 46 H 0.081 0.919 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.089 3.827 2.827 13.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.166 4.166 3 C 0.020 3.980 4 N -0.167 5.167 5 C 0.031 3.969 6 C -0.129 4.129 7 N -0.155 5.155 8 C -0.202 4.202 9 C -0.161 4.161 10 C -0.151 4.151 11 C 0.092 3.908 12 C -0.418 4.418 13 H 0.137 0.863 14 C -0.153 4.153 15 N -0.401 5.401 16 Si 0.744 3.256 17 H -0.173 1.173 18 H -0.196 1.196 19 H -0.196 1.196 20 N -0.116 5.116 21 N -0.174 5.174 22 C -0.038 4.038 23 N -0.168 5.168 24 C -0.087 4.087 25 C -0.174 4.174 26 C -0.121 4.121 27 H 0.102 0.898 28 C -0.198 4.198 29 C -0.067 4.067 30 H 0.118 0.882 31 H 0.115 0.885 32 H 0.132 0.868 33 H 0.102 0.898 34 H 0.142 0.858 35 H 0.139 0.861 36 H 0.117 0.883 37 H 0.146 0.854 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.085 0.915 41 H 0.095 0.905 42 H 0.089 0.911 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.075 0.925 46 H 0.099 0.901 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.985 4.374 3.645 14.178 hybrid contribution 0.565 -1.088 -0.300 1.262 sum -12.419 3.286 3.344 13.275 Atomic orbital electron populations 1.23826 0.95482 1.01831 1.01644 1.23193 0.95807 0.99037 0.98564 1.20967 0.91597 0.95613 0.89846 1.46038 1.11955 1.49177 1.09501 1.22284 0.80259 0.99323 0.95015 1.18879 0.90576 1.14499 0.88980 1.66778 1.38085 1.11426 0.99240 1.21380 0.93570 1.08840 0.96364 1.21327 0.96115 1.00750 0.97902 1.21393 1.00256 1.02281 0.91200 1.19156 0.88935 0.88940 0.93743 1.20316 1.10239 1.09684 1.01523 0.86342 1.26232 0.96365 0.93832 0.98839 1.69795 1.26552 1.07419 1.36361 0.86016 0.78680 0.80690 0.80249 1.17308 1.19605 1.19641 1.74750 1.20703 1.16588 0.99520 1.74646 0.97938 1.19456 1.25321 1.22344 0.94982 1.02363 0.84120 1.60015 1.00129 1.35144 1.21496 1.23187 0.92839 0.94734 0.97924 1.22851 1.01085 0.98220 0.95243 1.22320 0.96710 0.97657 0.95410 0.89785 1.21699 1.01836 1.02116 0.94184 1.23109 0.97159 1.02200 0.84276 0.88214 0.88452 0.86787 0.89751 0.85768 0.86141 0.88273 0.85392 0.90246 0.89905 0.91459 0.90456 0.91078 0.92273 0.92243 0.92464 0.90071 0.89703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.17 12.38 29.01 0.36 -1.81 16 2 C -0.15 -2.18 8.28 -36.03 -0.30 -2.48 16 3 C 0.14 2.36 5.39 -5.19 -0.03 2.33 16 4 N -0.47 -9.57 2.76 -116.17 -0.32 -9.89 16 5 C 0.29 7.06 7.75 -153.47 -1.19 5.87 16 6 C 0.01 0.25 6.96 -80.46 -0.56 -0.31 16 7 N -0.45 -10.15 7.88 -8.14 -0.06 -10.21 16 8 C -0.04 -0.80 11.11 -17.48 -0.19 -1.00 16 9 C -0.14 -3.04 9.98 -39.91 -0.40 -3.43 16 10 C -0.13 -3.05 8.71 -38.98 -0.34 -3.39 16 11 C 0.10 2.59 5.70 -104.47 -0.60 2.00 16 12 C -0.39 -10.17 8.12 -38.01 -0.31 -10.48 16 13 H 0.12 3.20 5.77 -52.48 -0.30 2.90 16 14 C 0.07 1.65 5.28 -17.32 -0.09 1.56 16 15 N -0.78 -18.93 10.97 55.55 0.61 -18.32 16 16 Si 0.92 18.72 29.57 -169.99 -5.03 13.69 16 17 H -0.25 -5.22 7.11 56.52 0.40 -4.82 16 18 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 19 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 20 N -0.28 -6.95 9.27 32.50 0.30 -6.65 16 21 N -0.33 -7.50 10.70 30.26 0.32 -7.17 16 22 C 0.32 6.29 6.83 -319.27 -2.18 4.11 16 23 N -0.44 -6.94 5.20 -171.40 -0.89 -7.83 16 24 C 0.04 0.52 4.99 -2.83 -0.01 0.50 16 25 C -0.14 -1.43 6.41 -24.91 -0.16 -1.59 16 26 C -0.10 -1.04 3.63 -88.48 -0.32 -1.36 16 27 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 28 C -0.14 -1.25 9.30 37.16 0.35 -0.90 16 29 C 0.06 0.82 5.95 -2.30 -0.01 0.80 16 30 H 0.10 1.01 8.06 -52.48 -0.42 0.59 16 31 H 0.10 0.96 7.29 -52.49 -0.38 0.57 16 32 H 0.11 1.97 8.06 -52.49 -0.42 1.55 16 33 H 0.08 1.22 7.78 -51.93 -0.40 0.81 16 34 H 0.12 2.23 6.30 -51.93 -0.33 1.90 16 35 H 0.12 2.20 8.06 -52.48 -0.42 1.78 16 36 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 37 H 0.13 3.13 6.44 -52.49 -0.34 2.80 16 38 H 0.29 6.28 8.30 -40.82 -0.34 5.94 16 39 H 0.08 0.92 7.20 -51.93 -0.37 0.55 16 40 H 0.07 1.00 5.28 -51.93 -0.27 0.73 16 41 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.81 8.04 -51.93 -0.42 0.39 16 43 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.08 1.30 6.75 -51.93 -0.35 0.95 16 47 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 374.64 15.07 5.65 5.65 Total: -1.00 -28.76 374.64 -11.94 -40.70 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -6.53 Total: 9.63 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -5.99 Total: -9.58 kcal Atomic # 7 Polarization: -60.04 SS G_CDS: -0.04 Total: -60.08 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.69 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -28.76 -11.94 -40.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121730892.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.514 kcal (2) G-P(sol) polarization free energy of solvation -28.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds