Wall clock time and date at job start Sat Apr 11 2020 05:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50700 * 119.99876 * 2 1 4 4 N 1.46499 * 109.47385 * 124.99776 * 3 2 1 5 5 C 1.37834 * 127.13962 * 89.97037 * 4 3 2 6 6 C 1.46885 * 126.49050 * 0.04296 * 5 4 3 7 7 N 1.33078 * 120.34053 * 359.97438 * 6 5 4 8 8 C 1.31471 * 121.63229 * 179.97438 * 7 6 5 9 9 C 1.38861 * 122.19223 * 359.97438 * 8 7 6 10 10 C 1.36702 * 120.45316 * 0.02562 * 9 8 7 11 11 C 1.41277 * 118.37739 * 359.97438 * 10 9 8 12 12 C 1.40656 * 120.98827 * 179.97438 * 11 10 9 13 13 H 1.08004 * 119.99952 * 149.80778 * 12 11 10 14 14 C 1.39991 * 119.99980 * 329.81051 * 12 11 10 15 15 N 1.30824 * 119.99820 * 349.81955 * 14 12 11 16 16 Si 1.86796 * 120.00104 * 169.82281 * 14 12 11 17 17 H 1.48500 * 109.47167 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47434 * 119.99704 * 16 14 12 19 19 H 1.48501 * 109.47243 * 239.99859 * 16 14 12 20 20 N 1.31824 * 107.01949 * 180.30109 * 5 4 3 21 21 N 1.28520 * 109.83788 * 359.56162 * 20 5 4 22 22 C 1.31873 * 110.07572 * 0.45202 * 21 20 5 23 23 N 1.37891 * 126.33208 * 179.70453 * 22 21 20 24 24 C 1.47437 * 111.00077 * 239.90299 * 23 22 21 25 25 C 1.54327 * 107.23425 * 123.25462 * 24 23 22 26 26 C 1.55134 * 103.01568 * 22.28208 * 25 24 23 27 27 H 1.08999 * 110.99094 * 82.43982 * 26 25 24 28 28 C 1.53004 * 110.99158 * 206.25475 * 26 25 24 29 29 C 1.47841 * 110.99552 * 0.74578 * 23 22 21 30 30 H 1.08003 * 119.99798 * 180.02562 * 1 2 3 31 31 H 1.07998 * 120.00151 * 0.02562 * 1 2 3 32 32 H 1.07998 * 120.00151 * 179.97438 * 2 1 3 33 33 H 1.09002 * 109.47328 * 4.99740 * 3 2 1 34 34 H 1.09003 * 109.46589 * 244.99816 * 3 2 1 35 35 H 1.08005 * 118.90317 * 180.02562 * 8 7 6 36 36 H 1.07999 * 119.76785 * 180.02562 * 9 8 7 37 37 H 1.07997 * 120.81071 * 179.97438 * 10 9 8 38 38 H 0.97004 * 119.99610 * 180.02562 * 15 14 12 39 39 H 1.09005 * 109.88986 * 242.65687 * 24 23 22 40 40 H 1.08999 * 109.89182 * 3.68714 * 24 23 22 41 41 H 1.09004 * 110.70589 * 140.66346 * 25 24 23 42 42 H 1.08997 * 110.70286 * 263.90280 * 25 24 23 43 43 H 1.09002 * 109.46729 * 58.54895 * 28 26 25 44 44 H 1.09001 * 109.47449 * 178.54856 * 28 26 25 45 45 H 1.09001 * 109.46930 * 298.54586 * 28 26 25 46 46 H 1.09000 * 110.37585 * 332.46342 * 29 23 22 47 47 H 1.09004 * 110.37826 * 94.80771 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1314 5 6 4.3015 0.8967 1.1441 6 6 5.0385 0.3121 0.0160 7 7 4.4465 0.1570 -1.1657 8 6 5.0822 -0.3628 -2.1924 9 6 6.4040 -0.7802 -2.1100 10 6 7.0963 -0.6614 -0.9373 11 6 6.4340 -0.1055 0.1800 12 6 7.0938 0.0418 1.4135 13 1 6.8211 0.8476 2.0789 14 6 8.1038 -0.8561 1.7786 15 7 8.3000 -1.9414 1.0750 16 14 9.1715 -0.5046 3.2705 17 1 8.7504 0.7779 3.8895 18 1 9.0207 -1.6040 4.2574 19 1 10.5926 -0.4078 2.8506 20 7 4.7638 1.0994 2.3619 21 7 3.8499 1.6310 3.0925 22 6 2.7454 1.7917 2.3902 23 7 1.5584 2.3258 2.8452 24 6 0.4584 1.3520 2.7202 25 6 -0.1521 1.1688 4.1257 26 6 0.2635 2.4709 4.8596 27 1 -0.4188 3.2873 4.6229 28 6 0.3430 2.2467 6.3710 29 6 1.6690 2.7317 4.2626 30 1 -0.5400 -0.9354 0.0004 31 1 -0.5400 0.9353 -0.0004 32 1 1.8501 -0.9353 0.0004 33 1 1.3586 2.1317 0.0895 34 1 2.6213 1.4025 -0.9314 35 1 4.5591 -0.4680 -3.1315 36 1 6.8883 -1.2016 -2.9785 37 1 8.1244 -0.9845 -0.8666 38 1 8.9996 -2.5638 1.3283 39 1 -0.2981 1.7331 2.0341 40 1 0.8451 0.4008 2.3544 41 1 -1.2376 1.0892 4.0669 42 1 0.2734 0.2954 4.6197 43 1 1.0624 1.4558 6.5836 44 1 0.6613 3.1680 6.8588 45 1 -0.6379 1.9564 6.7473 46 1 2.4168 2.1253 4.7737 47 1 1.9221 3.7894 4.3359 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121730892.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:43 Heat of formation + Delta-G solvation = 128.472660 kcal Electronic energy + Delta-G solvation = -30021.797141 eV Core-core repulsion = 26205.893113 eV Total energy + Delta-G solvation = -3815.904028 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.65527 -40.24422 -39.78023 -37.13708 -36.02356 -34.60040 -33.71763 -32.59663 -32.42847 -30.90199 -29.25511 -27.87201 -27.51115 -26.86176 -24.52750 -23.65278 -23.10093 -22.02922 -21.37582 -21.11505 -20.68623 -19.29480 -18.47057 -17.58029 -17.50637 -17.08236 -16.82936 -16.63109 -16.06631 -15.80245 -15.48374 -14.94175 -14.66573 -14.46675 -14.41714 -14.32048 -14.12624 -13.82478 -13.73998 -13.53573 -13.28839 -13.23480 -13.05325 -12.80717 -12.68798 -12.54463 -12.45288 -12.15295 -11.99098 -11.72582 -11.61291 -11.50286 -11.35373 -11.24092 -11.00347 -10.87937 -10.47121 -10.18884 -10.01722 -9.62652 -8.89713 -8.71776 -6.44810 0.17299 0.89636 0.97975 1.31867 1.34727 1.47862 1.50713 1.67847 2.09260 2.18037 2.70834 2.81361 3.43423 3.51383 3.55202 3.65685 3.74460 3.90430 3.94613 4.11517 4.22238 4.25978 4.42069 4.48117 4.50114 4.56244 4.61005 4.68852 4.71756 4.78486 4.79404 4.87019 4.92896 4.94400 4.99237 5.02107 5.11558 5.17285 5.20658 5.25002 5.27838 5.45960 5.55864 5.59403 5.64334 5.75010 5.81970 5.89017 6.06695 6.34576 6.57005 6.64417 6.77364 7.54603 7.96321 8.12212 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.011158 B = 0.004317 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2508.901911 B = 6483.921245 C = 8521.330250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.183 4.183 3 C 0.144 3.856 4 N -0.468 5.468 5 C 0.267 3.733 6 C -0.009 4.009 7 N -0.443 5.443 8 C -0.034 4.034 9 C -0.134 4.134 10 C -0.145 4.145 11 C 0.072 3.928 12 C -0.424 4.424 13 H 0.098 0.902 14 C 0.037 3.963 15 N -0.802 5.802 16 Si 0.981 3.019 17 H -0.267 1.267 18 H -0.265 1.265 19 H -0.250 1.250 20 N -0.309 5.309 21 N -0.366 5.366 22 C 0.339 3.661 23 N -0.441 5.441 24 C 0.037 3.963 25 C -0.130 4.130 26 C -0.088 4.088 27 H 0.107 0.893 28 C -0.138 4.138 29 C 0.051 3.949 30 H 0.119 0.881 31 H 0.126 0.874 32 H 0.080 0.920 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.161 0.839 36 H 0.136 0.864 37 H 0.121 0.879 38 H 0.296 0.704 39 H 0.112 0.888 40 H 0.046 0.954 41 H 0.112 0.888 42 H 0.057 0.943 43 H 0.041 0.959 44 H 0.065 0.935 45 H 0.078 0.922 46 H 0.052 0.948 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.531 4.213 2.315 17.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.202 4.202 3 C 0.023 3.977 4 N -0.162 5.162 5 C 0.003 3.997 6 C -0.148 4.148 7 N -0.153 5.153 8 C -0.198 4.198 9 C -0.154 4.154 10 C -0.171 4.171 11 C 0.065 3.935 12 C -0.452 4.452 13 H 0.116 0.884 14 C -0.181 4.181 15 N -0.427 5.427 16 Si 0.801 3.199 17 H -0.191 1.191 18 H -0.190 1.190 19 H -0.174 1.174 20 N -0.150 5.150 21 N -0.211 5.211 22 C -0.018 4.018 23 N -0.165 5.165 24 C -0.089 4.089 25 C -0.168 4.168 26 C -0.107 4.107 27 H 0.125 0.875 28 C -0.196 4.196 29 C -0.075 4.075 30 H 0.137 0.863 31 H 0.144 0.856 32 H 0.098 0.902 33 H 0.128 0.872 34 H 0.124 0.876 35 H 0.178 0.822 36 H 0.154 0.846 37 H 0.138 0.862 38 H 0.107 0.893 39 H 0.130 0.870 40 H 0.065 0.935 41 H 0.131 0.869 42 H 0.075 0.925 43 H 0.060 0.940 44 H 0.084 0.916 45 H 0.097 0.903 46 H 0.071 0.929 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -16.452 4.753 3.115 17.406 hybrid contribution 1.366 -1.160 -0.256 1.810 sum -15.086 3.594 2.859 15.769 Atomic orbital electron populations 1.24138 0.93924 1.04010 0.95878 1.22792 0.96832 0.96706 1.03864 1.21136 0.91163 0.97623 0.87791 1.46225 1.11219 1.48282 1.10515 1.22242 0.82003 1.00703 0.94723 1.19113 0.90649 1.14977 0.90017 1.66899 1.37882 1.11574 0.98898 1.22135 0.93707 1.06702 0.97264 1.21704 0.96236 0.99426 0.98071 1.21429 1.00290 1.03463 0.91968 1.19512 0.89779 0.89757 0.94446 1.20268 1.12378 1.10611 1.01979 0.88397 1.26849 0.96820 0.93289 1.01137 1.69791 1.27354 1.07874 1.37655 0.85157 0.77990 0.79578 0.77148 1.19105 1.18953 1.17411 1.74649 1.22305 1.17486 1.00521 1.74559 0.99036 1.21486 1.26056 1.22814 0.95586 0.99703 0.83716 1.60227 0.98778 1.35135 1.22376 1.23355 0.92095 0.93230 1.00224 1.22875 1.02905 0.97719 0.93321 1.22316 0.94238 0.98220 0.95894 0.87458 1.21692 1.02610 1.01974 0.93331 1.23241 0.99213 1.01721 0.83328 0.86288 0.85650 0.90169 0.87198 0.87561 0.82192 0.84619 0.86162 0.89256 0.86968 0.93543 0.86935 0.92462 0.93984 0.91566 0.90304 0.92904 0.89435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 12.38 67.77 0.84 -1.88 16 2 C -0.18 -5.24 8.28 25.64 0.21 -5.03 16 3 C 0.14 4.69 5.39 85.63 0.46 5.15 16 4 N -0.47 -19.55 2.76 -521.44 -1.44 -20.99 16 5 C 0.27 13.65 7.75 135.68 1.05 14.70 16 6 C -0.01 -0.49 6.96 43.40 0.30 -0.19 16 7 N -0.44 -20.49 7.88 -179.67 -1.42 -21.91 16 8 C -0.03 -1.41 11.11 84.90 0.94 -0.47 16 9 C -0.13 -5.72 9.98 22.06 0.22 -5.50 16 10 C -0.15 -7.31 8.71 22.66 0.20 -7.11 16 11 C 0.07 3.97 5.70 -19.76 -0.11 3.86 16 12 C -0.42 -23.70 8.12 23.29 0.19 -23.51 16 13 H 0.10 5.77 5.77 -2.91 -0.02 5.75 16 14 C 0.04 1.88 5.28 85.27 0.45 2.34 16 15 N -0.80 -40.54 10.97 21.84 0.24 -40.30 16 16 Si 0.98 40.18 29.57 68.60 2.03 42.21 16 17 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 18 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 19 H -0.25 -9.30 7.11 99.48 0.71 -8.60 16 20 N -0.31 -16.79 9.27 -51.08 -0.47 -17.26 16 21 N -0.37 -17.74 10.70 -58.19 -0.62 -18.37 16 22 C 0.34 13.75 6.83 260.25 1.78 15.52 16 23 N -0.44 -13.31 5.20 -696.18 -3.62 -16.93 16 24 C 0.04 0.85 4.99 86.65 0.43 1.29 16 25 C -0.13 -2.32 6.41 31.78 0.20 -2.11 16 26 C -0.09 -1.54 3.63 -9.41 -0.03 -1.57 16 27 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 28 C -0.14 -2.14 9.30 71.98 0.67 -1.47 16 29 C 0.05 1.39 5.95 86.77 0.52 1.90 16 30 H 0.12 1.88 8.06 -2.91 -0.02 1.86 16 31 H 0.13 1.74 7.29 -2.91 -0.02 1.72 16 32 H 0.08 2.86 8.06 -2.91 -0.02 2.83 16 33 H 0.11 2.92 7.78 -2.39 -0.02 2.90 16 34 H 0.11 3.83 6.30 -2.39 -0.02 3.81 16 35 H 0.16 5.36 8.06 -2.91 -0.02 5.33 16 36 H 0.14 4.73 8.06 -2.91 -0.02 4.71 16 37 H 0.12 6.13 6.44 -2.91 -0.02 6.11 16 38 H 0.30 13.32 8.30 -92.71 -0.77 12.55 16 39 H 0.11 1.94 7.20 -2.38 -0.02 1.92 16 40 H 0.05 1.30 5.28 -2.39 -0.01 1.29 16 41 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.06 1.20 8.04 -2.39 -0.02 1.18 16 43 H 0.04 0.79 8.10 -2.39 -0.02 0.77 16 44 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.05 1.75 6.75 -2.39 -0.02 1.74 16 47 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -69.52 374.64 4.00 -65.52 By element: Atomic # 1 Polarization: 31.11 SS G_CDS: 0.99 Total: 32.10 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: 8.32 Total: -4.08 kcal Atomic # 7 Polarization: -128.42 SS G_CDS: -7.33 Total: -135.76 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 2.03 Total: 42.21 kcal Total: -69.52 4.00 -65.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121730892.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.994 kcal (2) G-P(sol) polarization free energy of solvation -69.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds