Wall clock time and date at job start Sat Apr 11 2020 05:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86799 * 119.99826 * 2 1 4 4 H 1.48496 * 109.47065 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47235 * 300.00071 * 3 2 1 6 6 H 1.48501 * 109.47238 * 59.99763 * 3 2 1 7 7 C 1.38944 * 120.00011 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00069 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00263 * 359.97438 * 7 2 1 10 10 C 1.34772 * 120.00356 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99951 * 359.97438 * 10 9 7 12 12 C 1.50707 * 120.00246 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46955 * 180.02562 * 12 10 9 14 14 C 1.46201 * 110.99476 * 197.07823 * 13 12 10 15 15 C 1.51275 * 109.09581 * 144.77358 * 14 13 12 16 16 C 1.54172 * 109.77661 * 92.31139 * 15 14 13 17 17 N 1.47608 * 111.09298 * 320.23513 * 16 15 14 18 18 C 1.34780 * 118.74757 * 138.19749 * 17 16 15 19 19 O 1.21280 * 120.00423 * 179.73371 * 18 17 16 20 20 C 1.50701 * 119.99795 * 359.74047 * 18 17 16 21 21 C 1.52997 * 109.47212 * 179.97438 * 20 18 17 22 22 O 1.42903 * 112.85050 * 53.80347 * 21 20 18 23 23 C 1.53784 * 113.61716 * 282.49897 * 21 20 18 24 24 C 1.53782 * 87.08225 * 220.01852 * 23 21 20 25 25 C 1.53778 * 87.08131 * 25.42819 * 24 23 21 26 26 C 1.44887 * 122.50952 * 317.92767 * 17 16 15 27 27 C 1.41443 * 111.00099 * 66.04778 * 13 12 10 28 28 H 0.97003 * 120.00212 * 0.02562 * 1 2 3 29 29 H 0.97001 * 119.99553 * 0.02562 * 9 7 2 30 30 H 1.08994 * 109.46868 * 59.99859 * 12 10 9 31 31 H 1.09001 * 109.46803 * 299.99955 * 12 10 9 32 32 H 1.09002 * 109.53395 * 264.65678 * 14 13 12 33 33 H 1.09001 * 109.53371 * 24.81401 * 14 13 12 34 34 H 1.09003 * 109.44380 * 212.44933 * 15 14 13 35 35 H 1.08994 * 109.44867 * 332.35467 * 15 14 13 36 36 H 1.09006 * 109.31453 * 199.77237 * 16 15 14 37 37 H 1.08998 * 109.12842 * 80.58274 * 16 15 14 38 38 H 1.09002 * 109.47060 * 299.99722 * 20 18 17 39 39 H 1.09001 * 109.47380 * 59.99809 * 20 18 17 40 40 H 0.96705 * 113.99923 * 309.66161 * 22 21 20 41 41 H 1.09002 * 113.61067 * 334.56569 * 23 21 20 42 42 H 1.08997 * 113.61870 * 105.46505 * 23 21 20 43 43 H 1.08997 * 113.61130 * 270.87983 * 24 23 21 44 44 H 1.09003 * 113.69222 * 139.99145 * 24 23 21 45 45 H 1.08994 * 113.61671 * 220.01906 * 25 24 23 46 46 H 1.09004 * 113.69260 * 89.13079 * 25 24 23 47 47 H 1.09002 * 109.43682 * 210.06821 * 26 17 16 48 48 H 1.09003 * 109.43298 * 329.93485 * 26 17 16 49 49 H 1.08994 * 109.38532 * 71.52505 * 27 13 12 50 50 H 1.08999 * 109.38552 * 311.83912 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7080 1.3464 0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8893 2.3965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0010 12 6 1.2438 -4.8629 -0.0011 13 7 2.1985 -5.9795 -0.0004 14 6 1.5475 -7.2255 -0.4017 15 6 2.5242 -8.0586 -1.2020 16 6 3.2800 -9.0207 -0.2640 17 7 3.6235 -8.3597 1.0104 18 6 3.4733 -9.0486 2.1590 19 8 3.7532 -8.5293 3.2187 20 6 2.9576 -10.4643 2.1267 21 6 2.8830 -11.0126 3.5531 22 8 2.1290 -10.1744 4.4311 23 6 4.2475 -11.4352 4.1228 24 6 3.5261 -12.6435 4.7428 25 6 2.4828 -12.4958 3.6228 26 6 4.1213 -7.0005 1.0731 27 6 2.9344 -6.0163 1.2070 28 1 -0.4850 0.8401 -0.0004 29 1 0.3534 -2.3906 -0.0005 30 1 0.6175 -4.9204 -0.8913 31 1 0.6168 -4.9209 0.8886 32 1 1.2391 -7.7779 0.4859 33 1 0.6734 -6.9997 -1.0126 34 1 1.9810 -8.6345 -1.9513 35 1 3.2397 -7.4027 -1.6977 36 1 4.1963 -9.3539 -0.7514 37 1 2.6511 -9.8869 -0.0585 38 1 1.9638 -10.4788 1.6790 39 1 3.6318 -11.0832 1.5347 40 1 2.3920 -9.2441 4.4090 41 1 4.9749 -11.7065 3.3577 42 1 4.6471 -10.7395 4.8605 43 1 3.1278 -12.4502 5.7389 44 1 4.0974 -13.5702 4.6880 45 1 1.4578 -12.6562 3.9569 46 1 2.7264 -13.0567 2.7205 47 1 4.7794 -6.8947 1.9356 48 1 4.6780 -6.7759 0.1633 49 1 2.2833 -6.3429 2.0177 50 1 3.3145 -5.0193 1.4296 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195747708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:30 Heat of formation + Delta-G solvation = -80.388225 kcal Electronic energy + Delta-G solvation = -30771.948598 eV Core-core repulsion = 26607.386012 eV Total energy + Delta-G solvation = -4164.562586 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.95732 -39.57844 -38.54266 -37.30830 -35.25052 -34.55082 -33.84298 -32.64733 -31.31356 -31.03085 -28.83086 -26.81772 -26.00286 -25.72709 -24.30261 -23.55648 -22.09504 -20.64901 -19.84294 -19.39311 -18.92056 -17.89461 -17.43755 -16.78086 -16.40468 -16.01887 -15.89907 -15.49886 -15.32585 -14.99918 -14.78162 -14.54870 -14.27887 -14.10072 -13.90852 -13.56165 -13.38367 -13.14416 -12.95114 -12.76198 -12.57331 -12.29443 -11.87061 -11.82416 -11.55108 -11.52895 -11.46764 -11.40818 -11.21805 -11.11401 -11.03212 -10.93067 -10.87500 -10.61179 -10.34350 -10.22508 -9.84362 -9.78588 -9.48267 -8.78507 -8.42767 -7.96996 -7.73697 -6.41942 -3.82664 2.39600 2.84759 3.16175 3.26890 3.33924 3.87490 3.90022 3.95504 4.10355 4.23698 4.29708 4.39073 4.55455 4.58367 4.72299 4.81558 4.97795 5.01218 5.06077 5.14936 5.22652 5.27241 5.32895 5.36806 5.44022 5.44401 5.48796 5.51836 5.63214 5.64551 5.69478 5.80116 5.84580 5.84755 5.92929 5.99113 6.08414 6.13646 6.15636 6.28819 6.32947 6.58914 7.16221 7.34469 7.55214 7.62983 7.72707 8.03452 8.06652 8.61334 9.18003 9.54412 10.05728 10.75816 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022268 B = 0.002257 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.116875 B =12401.763964 C =12822.760187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.021 3.979 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.297 4.297 8 H 0.104 0.896 9 N -0.564 5.564 10 C 0.442 3.558 11 O -0.578 6.578 12 C 0.054 3.946 13 N -0.541 5.541 14 C 0.073 3.927 15 C -0.132 4.132 16 C 0.105 3.895 17 N -0.601 5.601 18 C 0.510 3.490 19 O -0.544 6.544 20 C -0.163 4.163 21 C 0.128 3.872 22 O -0.549 6.549 23 C -0.161 4.161 24 C -0.135 4.135 25 C -0.129 4.129 26 C 0.119 3.881 27 C 0.063 3.937 28 H 0.271 0.729 29 H 0.392 0.608 30 H 0.087 0.913 31 H 0.046 0.954 32 H 0.034 0.966 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.391 0.609 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.067 0.933 45 H 0.076 0.924 46 H 0.092 0.908 47 H 0.086 0.914 48 H 0.086 0.914 49 H 0.015 0.985 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.705 -25.260 0.704 25.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.427 4.427 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.228 3.772 11 O -0.462 6.462 12 C -0.077 4.077 13 N -0.265 5.265 14 C -0.055 4.055 15 C -0.171 4.171 16 C -0.017 4.017 17 N -0.334 5.334 18 C 0.299 3.701 19 O -0.423 6.423 20 C -0.203 4.203 21 C 0.086 3.914 22 O -0.362 6.362 23 C -0.199 4.199 24 C -0.172 4.172 25 C -0.166 4.166 26 C -0.004 4.004 27 C -0.067 4.067 28 H 0.081 0.919 29 H 0.225 0.775 30 H 0.105 0.895 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.246 0.754 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.102 0.898 44 H 0.085 0.915 45 H 0.095 0.905 46 H 0.110 0.890 47 H 0.105 0.895 48 H 0.105 0.895 49 H 0.033 0.967 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.586 -25.261 1.052 25.536 hybrid contribution -0.609 1.280 0.205 1.432 sum 2.977 -23.982 1.257 24.199 Atomic orbital electron populations 1.69621 1.05939 1.28041 1.50718 1.25265 0.95637 0.99742 0.97382 0.85805 0.79709 0.81172 0.77688 1.19221 1.20775 1.20782 1.19739 0.93371 0.82187 1.47390 0.87852 1.41890 1.09204 1.04648 1.64350 1.19806 0.88455 0.84601 0.84380 1.90478 1.13676 1.86883 1.55182 1.21828 0.93582 0.90906 1.01365 1.57775 1.28751 1.03380 1.36593 1.21509 0.95765 0.89940 0.98282 1.21955 0.99460 0.98041 0.97624 1.22151 0.99732 0.95523 0.84299 1.48002 1.64375 1.14652 1.06325 1.20718 0.77511 0.87982 0.83891 1.90552 1.51136 1.70959 1.29657 1.22404 1.03538 0.94314 1.00058 1.21794 0.92325 0.90570 0.86688 1.86328 1.61229 1.24719 1.63894 1.23566 0.96883 0.98403 1.01047 1.22740 0.97670 0.98145 0.98686 1.23058 1.00601 0.93307 0.99629 1.21642 0.96348 0.78872 1.03489 1.21773 0.94502 1.01972 0.88448 0.91938 0.77522 0.89470 0.93605 0.94735 0.90998 0.90311 0.89520 0.91465 0.90318 0.88184 0.87958 0.75390 0.89955 0.90543 0.89822 0.91455 0.90510 0.88977 0.89544 0.89526 0.96717 0.87086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.51 13.05 55.50 0.72 -23.79 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 3 Si 0.93 21.05 29.55 -169.99 -5.02 16.02 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.30 -8.22 9.68 -14.94 -0.14 -8.37 16 8 H 0.10 3.00 7.16 -52.48 -0.38 2.63 16 9 N -0.56 -14.16 5.29 -10.96 -0.06 -14.22 16 10 C 0.44 10.21 7.37 -10.98 -0.08 10.13 16 11 O -0.58 -15.08 13.97 5.55 0.08 -15.00 16 12 C 0.05 0.94 5.44 -4.97 -0.03 0.92 16 13 N -0.54 -8.53 3.60 -240.94 -0.87 -9.40 16 14 C 0.07 0.86 5.32 -5.07 -0.03 0.83 16 15 C -0.13 -1.21 5.79 -26.99 -0.16 -1.37 16 16 C 0.11 0.85 6.03 -2.82 -0.02 0.83 16 17 N -0.60 -6.75 2.17 -172.21 -0.37 -7.13 16 18 C 0.51 5.98 7.39 -10.98 -0.08 5.90 16 19 O -0.54 -8.08 13.02 -14.26 -0.19 -8.27 16 20 C -0.16 -1.37 3.68 -27.88 -0.10 -1.47 16 21 C 0.13 1.27 1.10 -89.81 -0.10 1.17 16 22 O -0.55 -7.13 13.39 -55.05 -0.74 -7.86 16 23 C -0.16 -1.52 7.17 -25.92 -0.19 -1.70 16 24 C -0.14 -1.10 8.02 -25.92 -0.21 -1.31 16 25 C -0.13 -1.00 7.47 -25.92 -0.19 -1.20 16 26 C 0.12 1.67 5.51 -3.97 -0.02 1.65 16 27 C 0.06 1.04 5.01 -5.74 -0.03 1.01 16 28 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 29 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16 30 H 0.09 1.36 7.57 -51.93 -0.39 0.96 16 31 H 0.05 0.77 8.11 -51.93 -0.42 0.35 16 32 H 0.03 0.42 7.33 -51.93 -0.38 0.04 16 33 H 0.07 0.78 7.36 -51.93 -0.38 0.40 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.09 0.97 7.98 -51.93 -0.41 0.56 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.46 5.87 -51.93 -0.30 0.15 16 38 H 0.10 0.74 7.42 -51.93 -0.39 0.36 16 39 H 0.10 0.61 7.94 -51.93 -0.41 0.20 16 40 H 0.39 5.32 6.19 45.56 0.28 5.60 16 41 H 0.08 0.66 8.03 -51.93 -0.42 0.24 16 42 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.09 0.51 8.10 -51.93 -0.42 0.09 16 47 H 0.09 1.28 7.28 -51.93 -0.38 0.90 16 48 H 0.09 1.22 8.11 -51.93 -0.42 0.80 16 49 H 0.01 0.26 8.12 -51.93 -0.42 -0.17 16 50 H 0.11 2.25 5.62 -51.93 -0.29 1.96 16 LS Contribution 389.09 15.07 5.86 5.86 Total: -1.00 -32.22 389.09 -9.58 -41.80 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: -7.53 Total: 14.50 kcal Atomic # 6 Polarization: 8.96 SS G_CDS: -1.47 Total: 7.49 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: -0.58 Total: -54.54 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -0.85 Total: -31.14 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.22 -9.58 -41.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195747708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.587 kcal (2) G-P(sol) polarization free energy of solvation -32.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds