Wall clock time and date at job start Sat Apr 11 2020 05:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86799 * 119.99826 * 2 1 4 4 H 1.48496 * 109.47065 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47235 * 300.00071 * 3 2 1 6 6 H 1.48501 * 109.47238 * 59.99763 * 3 2 1 7 7 C 1.38944 * 120.00011 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00069 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00263 * 359.97438 * 7 2 1 10 10 C 1.34772 * 120.00356 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99951 * 359.97438 * 10 9 7 12 12 C 1.50707 * 120.00246 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46955 * 180.02562 * 12 10 9 14 14 C 1.46201 * 110.99476 * 197.07823 * 13 12 10 15 15 C 1.51275 * 109.09581 * 144.77358 * 14 13 12 16 16 C 1.54172 * 109.77661 * 92.31139 * 15 14 13 17 17 N 1.47608 * 111.09298 * 320.23513 * 16 15 14 18 18 C 1.34780 * 118.74757 * 138.19749 * 17 16 15 19 19 O 1.21280 * 120.00423 * 179.73371 * 18 17 16 20 20 C 1.50701 * 119.99795 * 359.74047 * 18 17 16 21 21 C 1.52997 * 109.47212 * 179.97438 * 20 18 17 22 22 O 1.42903 * 112.85050 * 53.80347 * 21 20 18 23 23 C 1.53784 * 113.61716 * 282.49897 * 21 20 18 24 24 C 1.53782 * 87.08225 * 220.01852 * 23 21 20 25 25 C 1.53778 * 87.08131 * 25.42819 * 24 23 21 26 26 C 1.44887 * 122.50952 * 317.92767 * 17 16 15 27 27 C 1.41443 * 111.00099 * 66.04778 * 13 12 10 28 28 H 0.97003 * 120.00212 * 0.02562 * 1 2 3 29 29 H 0.97001 * 119.99553 * 0.02562 * 9 7 2 30 30 H 1.08994 * 109.46868 * 59.99859 * 12 10 9 31 31 H 1.09001 * 109.46803 * 299.99955 * 12 10 9 32 32 H 1.09002 * 109.53395 * 264.65678 * 14 13 12 33 33 H 1.09001 * 109.53371 * 24.81401 * 14 13 12 34 34 H 1.09003 * 109.44380 * 212.44933 * 15 14 13 35 35 H 1.08994 * 109.44867 * 332.35467 * 15 14 13 36 36 H 1.09006 * 109.31453 * 199.77237 * 16 15 14 37 37 H 1.08998 * 109.12842 * 80.58274 * 16 15 14 38 38 H 1.09002 * 109.47060 * 299.99722 * 20 18 17 39 39 H 1.09001 * 109.47380 * 59.99809 * 20 18 17 40 40 H 0.96705 * 113.99923 * 309.66161 * 22 21 20 41 41 H 1.09002 * 113.61067 * 334.56569 * 23 21 20 42 42 H 1.08997 * 113.61870 * 105.46505 * 23 21 20 43 43 H 1.08997 * 113.61130 * 270.87983 * 24 23 21 44 44 H 1.09003 * 113.69222 * 139.99145 * 24 23 21 45 45 H 1.08994 * 113.61671 * 220.01906 * 25 24 23 46 46 H 1.09004 * 113.69260 * 89.13079 * 25 24 23 47 47 H 1.09002 * 109.43682 * 210.06821 * 26 17 16 48 48 H 1.09003 * 109.43298 * 329.93485 * 26 17 16 49 49 H 1.08994 * 109.38532 * 71.52505 * 27 13 12 50 50 H 1.08999 * 109.38552 * 311.83912 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7080 1.3464 0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8893 2.3965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0010 12 6 1.2438 -4.8629 -0.0011 13 7 2.1985 -5.9795 -0.0004 14 6 1.5475 -7.2255 -0.4017 15 6 2.5242 -8.0586 -1.2020 16 6 3.2800 -9.0207 -0.2640 17 7 3.6235 -8.3597 1.0104 18 6 3.4733 -9.0486 2.1590 19 8 3.7532 -8.5293 3.2187 20 6 2.9576 -10.4643 2.1267 21 6 2.8830 -11.0126 3.5531 22 8 2.1290 -10.1744 4.4311 23 6 4.2475 -11.4352 4.1228 24 6 3.5261 -12.6435 4.7428 25 6 2.4828 -12.4958 3.6228 26 6 4.1213 -7.0005 1.0731 27 6 2.9344 -6.0163 1.2070 28 1 -0.4850 0.8401 -0.0004 29 1 0.3534 -2.3906 -0.0005 30 1 0.6175 -4.9204 -0.8913 31 1 0.6168 -4.9209 0.8886 32 1 1.2391 -7.7779 0.4859 33 1 0.6734 -6.9997 -1.0126 34 1 1.9810 -8.6345 -1.9513 35 1 3.2397 -7.4027 -1.6977 36 1 4.1963 -9.3539 -0.7514 37 1 2.6511 -9.8869 -0.0585 38 1 1.9638 -10.4788 1.6790 39 1 3.6318 -11.0832 1.5347 40 1 2.3920 -9.2441 4.4090 41 1 4.9749 -11.7065 3.3577 42 1 4.6471 -10.7395 4.8605 43 1 3.1278 -12.4502 5.7389 44 1 4.0974 -13.5702 4.6880 45 1 1.4578 -12.6562 3.9569 46 1 2.7264 -13.0567 2.7205 47 1 4.7794 -6.8947 1.9356 48 1 4.6780 -6.7759 0.1633 49 1 2.2833 -6.3429 2.0177 50 1 3.3145 -5.0193 1.4296 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195747708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:29 Heat of formation + Delta-G solvation = -103.467658 kcal Electronic energy + Delta-G solvation = -30772.949397 eV Core-core repulsion = 26607.386012 eV Total energy + Delta-G solvation = -4165.563385 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.85030 -40.70308 -39.86621 -38.59392 -36.42364 -35.77512 -35.40138 -33.61270 -33.27722 -31.95198 -30.05259 -28.01793 -26.99867 -26.63869 -25.86052 -24.49654 -23.03872 -21.71069 -21.07353 -20.55937 -20.01226 -19.79156 -18.34143 -17.95309 -17.49462 -17.20772 -16.86855 -16.67915 -16.46017 -16.30175 -15.93018 -15.88487 -15.55883 -15.42647 -15.18201 -14.71706 -14.50974 -14.23369 -13.94737 -13.76792 -13.58343 -13.43282 -13.23626 -13.04894 -12.91574 -12.73094 -12.54751 -12.53397 -12.42436 -12.32308 -12.14388 -12.12532 -11.87292 -11.80747 -11.75933 -11.47151 -11.33064 -10.68625 -10.58465 -10.28951 -10.00467 -9.68314 -9.09165 -8.46938 -5.95303 1.35454 1.40589 1.52679 1.54711 1.98587 2.05508 2.27683 2.75207 3.14677 3.19822 3.33679 3.41682 3.63746 3.70928 3.84493 3.90887 3.99642 4.03888 4.13775 4.15993 4.31536 4.36784 4.39932 4.43622 4.49632 4.51761 4.56098 4.61169 4.70421 4.76611 4.79895 4.84909 4.87521 4.91005 5.02088 5.05512 5.13065 5.14371 5.31968 5.33018 5.40912 5.44636 5.61044 5.91767 6.13534 6.29552 6.53772 6.60493 6.69770 7.13044 7.14742 7.56726 8.12283 8.70675 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022268 B = 0.002257 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.116875 B =12401.763964 C =12822.760187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.015 4.015 3 Si 0.992 3.008 4 H -0.274 1.274 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.329 4.329 8 H 0.079 0.921 9 N -0.576 5.576 10 C 0.440 3.560 11 O -0.612 6.612 12 C 0.065 3.935 13 N -0.549 5.549 14 C 0.069 3.931 15 C -0.127 4.127 16 C 0.100 3.900 17 N -0.600 5.600 18 C 0.503 3.497 19 O -0.585 6.585 20 C -0.151 4.151 21 C 0.109 3.891 22 O -0.571 6.571 23 C -0.165 4.165 24 C -0.136 4.136 25 C -0.116 4.116 26 C 0.133 3.867 27 C 0.074 3.926 28 H 0.277 0.723 29 H 0.395 0.605 30 H 0.115 0.885 31 H 0.055 0.945 32 H 0.036 0.964 33 H 0.087 0.913 34 H 0.116 0.884 35 H 0.064 0.936 36 H 0.087 0.913 37 H 0.113 0.887 38 H 0.120 0.880 39 H 0.139 0.861 40 H 0.383 0.617 41 H 0.102 0.898 42 H 0.046 0.954 43 H 0.065 0.935 44 H 0.088 0.912 45 H 0.070 0.930 46 H 0.127 0.873 47 H 0.069 0.931 48 H 0.084 0.916 49 H 0.002 0.998 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.010 -28.118 -1.260 28.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.215 4.215 3 Si 0.816 3.184 4 H -0.198 1.198 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.459 4.459 8 H 0.097 0.903 9 N -0.214 5.214 10 C 0.227 3.773 11 O -0.498 6.498 12 C -0.066 4.066 13 N -0.274 5.274 14 C -0.057 4.057 15 C -0.166 4.166 16 C -0.020 4.020 17 N -0.332 5.332 18 C 0.294 3.706 19 O -0.467 6.467 20 C -0.191 4.191 21 C 0.067 3.933 22 O -0.383 6.383 23 C -0.203 4.203 24 C -0.173 4.173 25 C -0.153 4.153 26 C 0.009 3.991 27 C -0.056 4.056 28 H 0.086 0.914 29 H 0.229 0.771 30 H 0.133 0.867 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.106 0.894 34 H 0.134 0.866 35 H 0.083 0.917 36 H 0.105 0.895 37 H 0.131 0.869 38 H 0.138 0.862 39 H 0.157 0.843 40 H 0.237 0.763 41 H 0.120 0.880 42 H 0.064 0.936 43 H 0.083 0.917 44 H 0.107 0.893 45 H 0.089 0.911 46 H 0.145 0.855 47 H 0.087 0.913 48 H 0.103 0.897 49 H 0.020 0.980 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.862 -28.171 -0.940 28.331 hybrid contribution -0.368 2.117 0.839 2.307 sum 2.494 -26.054 -0.102 26.173 Atomic orbital electron populations 1.69680 1.06805 1.29155 1.50634 1.26034 0.96557 1.02409 0.96462 0.84880 0.78029 0.77196 0.78288 1.19820 1.19483 1.19803 1.19673 0.92637 0.83975 1.49571 0.90335 1.41963 1.09287 1.04776 1.65335 1.20848 0.88392 0.85955 0.82062 1.90457 1.15585 1.87722 1.56003 1.21730 0.93336 0.88477 1.03031 1.57826 1.28945 1.04810 1.35837 1.21712 0.96936 0.88165 0.98884 1.21945 0.98708 0.97879 0.98032 1.22477 1.01277 0.95770 0.82500 1.48066 1.63977 1.13276 1.07845 1.21433 0.76752 0.89277 0.83178 1.90548 1.52762 1.72080 1.31276 1.22434 1.05156 0.91884 0.99605 1.22195 0.92477 0.91450 0.87159 1.86308 1.62125 1.24529 1.65320 1.23614 0.97201 0.98376 1.01062 1.22732 0.97989 0.98475 0.98100 1.23117 1.00000 0.91531 1.00666 1.21239 0.94906 0.80442 1.02540 1.21493 0.95275 1.00194 0.88665 0.91367 0.77127 0.86697 0.92682 0.94529 0.89424 0.86627 0.91708 0.89476 0.86883 0.86227 0.84331 0.76296 0.88010 0.93554 0.91670 0.89337 0.91125 0.85499 0.91273 0.89719 0.97980 0.91642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.28 13.05 21.66 0.28 -49.99 16 2 C -0.02 -0.82 5.50 84.92 0.47 -0.35 16 3 Si 0.99 43.54 29.55 68.60 2.03 45.57 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 6 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 7 C -0.33 -18.85 9.68 84.04 0.81 -18.04 16 8 H 0.08 4.81 7.16 -2.91 -0.02 4.78 16 9 N -0.58 -29.87 5.29 -306.99 -1.62 -31.49 16 10 C 0.44 21.03 7.37 87.66 0.65 21.67 16 11 O -0.61 -33.53 13.97 -3.07 -0.04 -33.58 16 12 C 0.06 2.26 5.44 85.56 0.47 2.72 16 13 N -0.55 -17.15 3.60 -916.19 -3.30 -20.45 16 14 C 0.07 1.46 5.32 85.87 0.46 1.91 16 15 C -0.13 -1.87 5.79 30.43 0.18 -1.70 16 16 C 0.10 1.19 6.03 86.56 0.52 1.72 16 17 N -0.60 -12.48 2.17 -817.15 -1.78 -14.26 16 18 C 0.50 11.12 7.39 87.66 0.65 11.77 16 19 O -0.58 -17.95 13.02 15.92 0.21 -17.74 16 20 C -0.15 -2.01 3.68 29.85 0.11 -1.90 16 21 C 0.11 1.96 1.10 -10.27 -0.01 1.95 16 22 O -0.57 -15.01 13.39 -130.03 -1.74 -16.75 16 23 C -0.16 -2.91 7.17 31.12 0.22 -2.68 16 24 C -0.14 -1.98 8.02 31.12 0.25 -1.73 16 25 C -0.12 -1.44 7.47 31.12 0.23 -1.21 16 26 C 0.13 3.83 5.51 87.29 0.48 4.31 16 27 C 0.07 2.56 5.01 87.90 0.44 3.00 16 28 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 29 H 0.40 19.52 7.90 -92.71 -0.73 18.79 16 30 H 0.12 3.37 7.57 -2.39 -0.02 3.36 16 31 H 0.06 1.83 8.11 -2.39 -0.02 1.81 16 32 H 0.04 0.77 7.33 -2.39 -0.02 0.76 16 33 H 0.09 1.58 7.36 -2.39 -0.02 1.56 16 34 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.06 1.29 7.98 -2.39 -0.02 1.27 16 36 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 37 H 0.11 0.62 5.87 -2.39 -0.01 0.61 16 38 H 0.12 1.18 7.42 -2.39 -0.02 1.16 16 39 H 0.14 0.87 7.94 -2.39 -0.02 0.85 16 40 H 0.38 11.05 6.19 -74.05 -0.46 10.60 16 41 H 0.10 1.36 8.03 -2.39 -0.02 1.34 16 42 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.06 1.17 8.14 -2.39 -0.02 1.16 16 44 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.13 0.71 8.10 -2.38 -0.02 0.69 16 47 H 0.07 2.20 7.28 -2.39 -0.02 2.19 16 48 H 0.08 2.45 8.11 -2.39 -0.02 2.43 16 49 H 0.00 0.08 8.12 -2.39 -0.02 0.06 16 50 H 0.07 2.87 5.62 -2.39 -0.01 2.85 16 Total: -1.00 -75.58 389.09 -0.28 -75.86 By element: Atomic # 1 Polarization: 41.62 SS G_CDS: -0.23 Total: 41.39 kcal Atomic # 6 Polarization: 15.53 SS G_CDS: 5.92 Total: 21.44 kcal Atomic # 7 Polarization: -109.78 SS G_CDS: -6.42 Total: -116.19 kcal Atomic # 8 Polarization: -66.49 SS G_CDS: -1.58 Total: -68.07 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -75.58 -0.28 -75.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195747708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.608 kcal (2) G-P(sol) polarization free energy of solvation -75.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds