Wall clock time and date at job start Sat Apr 11 2020 05:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86800 * 120.00221 * 2 1 4 4 H 1.48500 * 109.47210 * 270.00114 * 3 2 1 5 5 H 1.48506 * 109.47251 * 29.99788 * 3 2 1 6 6 H 1.48504 * 109.47424 * 149.99882 * 3 2 1 7 7 C 1.38958 * 120.00295 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99408 * 359.97438 * 7 2 1 9 9 N 1.37092 * 120.00096 * 180.02562 * 7 2 1 10 10 C 1.34777 * 119.99729 * 179.72242 * 9 7 2 11 11 O 1.21293 * 120.00229 * 0.27992 * 10 9 7 12 12 C 1.50703 * 120.00290 * 180.27555 * 10 9 7 13 13 N 1.46896 * 109.47254 * 180.02562 * 12 10 9 14 14 C 1.48525 * 111.00193 * 52.60384 * 13 12 10 15 15 C 1.54940 * 103.22735 * 159.71854 * 14 13 12 16 16 C 1.54596 * 102.92265 * 322.58855 * 15 14 13 17 17 H 1.08998 * 110.30436 * 263.04140 * 16 15 14 18 18 N 1.46494 * 110.31063 * 140.87023 * 16 15 14 19 19 C 1.34782 * 119.99681 * 89.27892 * 18 16 15 20 20 O 1.21282 * 120.00245 * 0.02562 * 19 18 16 21 21 C 1.50702 * 119.99800 * 179.97438 * 19 18 16 22 22 C 1.53001 * 109.46926 * 180.02562 * 21 19 18 23 23 H 1.08999 * 109.52132 * 305.11972 * 22 21 19 24 24 C 1.53181 * 109.52065 * 185.00139 * 22 21 19 25 25 C 1.53172 * 109.03634 * 183.11214 * 24 22 21 26 26 C 1.53087 * 109.16380 * 56.97899 * 25 24 22 27 27 O 1.42902 * 109.41966 * 302.39178 * 26 25 24 28 28 C 1.42908 * 114.09401 * 61.15533 * 27 26 25 29 29 C 1.47907 * 110.99703 * 170.00417 * 13 12 10 30 30 H 0.97004 * 119.99848 * 359.97438 * 1 2 3 31 31 H 0.97001 * 120.00484 * 0.02562 * 9 7 2 32 32 H 1.08998 * 109.46954 * 300.00581 * 12 10 9 33 33 H 1.09002 * 109.46946 * 59.99717 * 12 10 9 34 34 H 1.08999 * 110.66733 * 278.15758 * 14 13 12 35 35 H 1.09000 * 110.66754 * 41.28792 * 14 13 12 36 36 H 1.08999 * 110.72549 * 204.22245 * 15 14 13 37 37 H 1.09004 * 110.87044 * 81.01583 * 15 14 13 38 38 H 0.96993 * 120.00426 * 269.28771 * 18 16 15 39 39 H 1.09001 * 109.47294 * 300.00081 * 21 19 18 40 40 H 1.08993 * 109.47225 * 60.00536 * 21 19 18 41 41 H 1.08998 * 109.54581 * 302.98024 * 24 22 21 42 42 H 1.09000 * 109.54430 * 63.24587 * 24 22 21 43 43 H 1.09004 * 109.52562 * 176.88852 * 25 24 22 44 44 H 1.09004 * 109.52329 * 297.01074 * 25 24 22 45 45 H 1.09008 * 109.48248 * 62.37655 * 26 25 24 46 46 H 1.09009 * 109.48386 * 182.39650 * 26 25 24 47 47 H 1.08998 * 109.48020 * 178.86376 * 28 27 26 48 48 H 1.08998 * 109.47954 * 58.82815 * 28 27 26 49 49 H 1.09001 * 109.91349 * 333.50437 * 29 13 12 50 50 H 1.08997 * 109.91716 * 94.80303 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 1.4689 -2.1387 0.0014 9 7 3.3798 -1.2033 0.0011 10 6 4.0537 -2.3705 0.0072 11 8 3.4473 -3.4210 0.0072 12 6 5.5607 -2.3706 0.0141 13 7 6.0503 -3.7555 0.0194 14 6 5.4388 -4.5405 -1.0832 15 6 6.4146 -5.7319 -1.2538 16 6 7.7978 -5.0820 -1.0208 17 1 8.2633 -4.8312 -1.9740 18 7 8.6607 -5.9838 -0.2539 19 6 9.4362 -6.8810 -0.8943 20 8 9.4200 -6.9415 -2.1055 21 6 10.3243 -7.8084 -0.1054 22 6 11.0929 -8.7181 -1.0659 23 1 10.3897 -9.2373 -1.7171 24 6 11.9005 -9.7433 -0.2639 25 6 12.7253 -10.5972 -1.2318 26 6 13.6196 -9.6822 -2.0723 27 8 12.8083 -8.7335 -2.7681 28 6 12.0503 -7.8756 -1.9127 29 6 7.5102 -3.8025 -0.2135 30 1 -0.4850 0.8401 0.0004 31 1 3.8649 -0.3633 0.0014 32 1 5.9281 -1.8591 -0.8755 33 1 5.9200 -1.8543 0.9044 34 1 4.4469 -4.8930 -0.8004 35 1 5.3916 -3.9482 -1.9970 36 1 6.3470 -6.1449 -2.2602 37 1 6.2202 -6.5029 -0.5082 38 1 8.6739 -5.9353 0.7148 39 1 11.0305 -7.2222 0.4827 40 1 9.7133 -8.4169 0.5612 41 1 12.5680 -9.2243 0.4240 42 1 11.2209 -10.3834 0.2987 43 1 13.3452 -11.2930 -0.6663 44 1 12.0558 -11.1552 -1.8865 45 1 14.3162 -9.1555 -1.4199 46 1 14.1777 -10.2807 -2.7924 47 1 11.4777 -7.1727 -2.5179 48 1 12.7263 -7.3254 -1.2583 49 1 7.8238 -2.9266 -0.7815 50 1 8.0373 -3.8386 0.7398 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316996521.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:49 Heat of formation + Delta-G solvation = -112.567919 kcal Electronic energy + Delta-G solvation = -29298.549649 eV Core-core repulsion = 25132.591647 eV Total energy + Delta-G solvation = -4165.958002 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.58351 -39.60580 -38.88397 -37.59608 -34.81622 -34.53943 -33.88221 -32.47607 -31.78406 -31.07692 -28.84769 -27.77263 -26.44988 -25.35980 -24.06767 -23.18381 -21.31044 -20.97680 -20.60769 -20.33395 -19.45384 -18.32870 -17.35109 -16.69131 -16.61516 -16.38237 -15.95594 -15.56187 -15.46754 -15.05333 -14.84802 -14.79116 -14.53993 -14.41767 -13.99798 -13.39642 -13.33532 -13.14910 -13.01188 -12.95897 -12.61819 -12.52322 -12.31043 -12.07628 -11.96860 -11.69175 -11.62985 -11.54862 -11.38322 -11.20891 -11.19121 -11.08210 -10.72029 -10.64709 -10.58466 -10.00946 -9.93330 -9.76757 -9.59182 -9.24525 -8.52298 -8.24218 -8.08689 -6.34622 -3.86219 2.40329 2.91506 2.99859 3.04150 3.12766 3.59543 3.68026 3.99490 4.07434 4.24983 4.30554 4.37548 4.44430 4.51831 4.63473 4.71102 4.79982 4.86764 4.98268 5.03628 5.07666 5.11796 5.16761 5.19029 5.22536 5.37285 5.38352 5.40292 5.48040 5.56699 5.58793 5.62455 5.62904 5.69563 5.78404 5.86698 5.89981 5.95687 5.99763 6.19371 6.38215 6.58987 6.91199 7.06821 7.09653 7.29740 7.54101 8.01347 8.10828 8.55612 8.91295 9.38205 9.78088 10.78285 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.041518 B = 0.001654 C = 0.001633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.250728 B =16928.750605 C =17141.751369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.042 3.958 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.306 4.306 8 H 0.120 0.880 9 N -0.588 5.588 10 C 0.450 3.550 11 O -0.562 6.562 12 C 0.033 3.967 13 N -0.494 5.494 14 C 0.037 3.963 15 C -0.134 4.134 16 C 0.134 3.866 17 H 0.094 0.906 18 N -0.719 5.719 19 C 0.510 3.490 20 O -0.537 6.537 21 C -0.136 4.136 22 C -0.107 4.107 23 H 0.089 0.911 24 C -0.119 4.119 25 C -0.156 4.156 26 C 0.056 3.944 27 O -0.380 6.380 28 C 0.062 3.938 29 C 0.027 3.973 30 H 0.274 0.726 31 H 0.371 0.629 32 H 0.051 0.949 33 H 0.091 0.909 34 H 0.122 0.878 35 H 0.039 0.961 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.402 0.598 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.048 0.952 46 H 0.091 0.909 47 H 0.112 0.888 48 H 0.042 0.958 49 H 0.053 0.947 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.942 -14.374 1.182 31.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.161 4.161 3 Si 0.706 3.294 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.195 1.195 7 C -0.435 4.435 8 H 0.138 0.862 9 N -0.227 5.227 10 C 0.236 3.764 11 O -0.445 6.445 12 C -0.099 4.099 13 N -0.218 5.218 14 C -0.090 4.090 15 C -0.173 4.173 16 C 0.029 3.971 17 H 0.112 0.888 18 N -0.371 5.371 19 C 0.297 3.703 20 O -0.414 6.414 21 C -0.176 4.176 22 C -0.126 4.126 23 H 0.107 0.893 24 C -0.156 4.156 25 C -0.194 4.194 26 C -0.020 4.020 27 O -0.298 6.298 28 C -0.014 4.014 29 C -0.102 4.102 30 H 0.084 0.916 31 H 0.203 0.797 32 H 0.069 0.931 33 H 0.110 0.890 34 H 0.140 0.860 35 H 0.058 0.942 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.237 0.763 39 H 0.112 0.888 40 H 0.116 0.884 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.066 0.934 46 H 0.109 0.891 47 H 0.130 0.870 48 H 0.061 0.939 49 H 0.072 0.928 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 27.157 -15.183 0.614 31.119 hybrid contribution 0.748 1.924 0.199 2.074 sum 27.905 -13.259 0.813 30.906 Atomic orbital electron populations 1.69618 1.05653 1.27551 1.49108 1.25041 0.95490 0.97990 0.97557 0.86678 0.79807 0.84051 0.78889 1.19638 1.20121 1.19474 1.19432 0.79166 0.96661 1.48203 0.86219 1.42192 1.07573 1.06106 1.66789 1.19586 0.88078 0.84582 0.84147 1.90483 1.69468 1.30518 1.54004 1.22148 0.95505 0.90505 1.01738 1.64639 1.02169 1.10633 1.44403 1.23511 1.00738 0.93083 0.91704 1.22985 0.93397 0.98729 1.02236 1.21862 0.90985 0.89008 0.95232 0.88776 1.46159 1.43545 1.36955 1.10452 1.20698 0.80156 0.80862 0.88601 1.90698 1.66799 1.69723 1.14158 1.21700 0.98865 0.97975 0.99098 1.21559 0.97815 0.96357 0.96897 0.89269 1.21664 0.98802 0.97508 0.97653 1.22180 0.99605 0.98708 0.98865 1.22587 0.92479 0.90852 0.96125 1.87994 1.59877 1.48527 1.33404 1.22860 0.92480 0.92061 0.94047 1.23195 0.91045 0.96241 0.99707 0.91566 0.79671 0.93091 0.89036 0.86045 0.94228 0.90841 0.90490 0.76285 0.88783 0.88354 0.91720 0.91224 0.90876 0.90903 0.93410 0.89068 0.87025 0.93930 0.92849 0.89936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.43 13.96 55.50 0.77 -24.65 16 2 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 3 Si 0.88 19.10 27.74 -169.99 -4.71 14.39 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.27 -5.31 6.52 56.52 0.37 -4.94 16 7 C -0.31 -8.52 10.16 -14.93 -0.15 -8.67 16 8 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 9 N -0.59 -13.71 5.09 -10.96 -0.06 -13.77 16 10 C 0.45 9.93 7.49 -10.98 -0.08 9.84 16 11 O -0.56 -14.39 13.10 5.55 0.07 -14.32 16 12 C 0.03 0.53 5.52 -4.98 -0.03 0.50 16 13 N -0.49 -7.51 5.26 -231.89 -1.22 -8.73 16 14 C 0.04 0.59 5.30 -1.90 -0.01 0.58 16 15 C -0.13 -1.75 6.78 -24.87 -0.17 -1.92 16 16 C 0.13 1.49 3.34 -66.58 -0.22 1.27 16 17 H 0.09 1.14 7.56 -51.93 -0.39 0.74 16 18 N -0.72 -6.31 5.06 -52.49 -0.27 -6.57 16 19 C 0.51 4.90 7.56 -10.98 -0.08 4.82 16 20 O -0.54 -7.23 13.64 5.56 0.08 -7.15 16 21 C -0.14 -0.84 5.18 -27.88 -0.14 -0.99 16 22 C -0.11 -0.82 2.03 -90.48 -0.18 -1.00 16 23 H 0.09 0.88 7.95 -51.93 -0.41 0.46 16 24 C -0.12 -0.67 5.31 -26.55 -0.14 -0.81 16 25 C -0.16 -0.91 6.14 -26.60 -0.16 -1.08 16 26 C 0.06 0.39 6.84 37.20 0.25 0.65 16 27 O -0.38 -3.97 10.77 -35.23 -0.38 -4.35 16 28 C 0.06 0.57 5.84 37.20 0.22 0.79 16 29 C 0.03 0.30 6.47 -2.75 -0.02 0.28 16 30 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 31 H 0.37 7.59 5.76 -40.82 -0.24 7.36 16 32 H 0.05 0.73 7.81 -51.93 -0.41 0.33 16 33 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.12 2.38 5.97 -51.93 -0.31 2.07 16 35 H 0.04 0.64 8.02 -51.93 -0.42 0.23 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.08 1.01 8.06 -51.93 -0.42 0.59 16 38 H 0.40 2.59 8.35 -40.82 -0.34 2.25 16 39 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.05 0.28 8.14 -51.92 -0.42 -0.14 16 46 H 0.09 0.53 8.14 -51.92 -0.42 0.10 16 47 H 0.11 1.26 6.04 -51.93 -0.31 0.95 16 48 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.05 0.56 7.57 -51.93 -0.39 0.17 16 50 H 0.08 0.78 7.65 -51.93 -0.40 0.38 16 LS Contribution 390.79 15.07 5.89 5.89 Total: -1.00 -33.84 390.79 -9.08 -42.92 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: -8.24 Total: 11.03 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: -1.02 Total: 5.32 kcal Atomic # 7 Polarization: -52.96 SS G_CDS: -0.77 Total: -53.72 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: -0.23 Total: -25.82 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -4.71 Total: 14.39 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.84 -9.08 -42.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316996521.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.648 kcal (2) G-P(sol) polarization free energy of solvation -33.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds