Wall clock time and date at job start Sat Apr 11 2020 05:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86797 * 119.99779 * 2 1 4 4 H 1.48507 * 109.46650 * 239.99893 * 3 2 1 5 5 H 1.48491 * 109.47347 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47359 * 120.00227 * 3 2 1 7 7 C 1.38952 * 119.99946 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99914 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99813 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99292 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00664 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99645 * 179.97438 * 10 9 7 13 13 N 1.46898 * 109.47434 * 180.02562 * 12 10 9 14 14 C 1.48188 * 111.07602 * 70.70397 * 13 12 10 15 15 C 1.53936 * 86.21984 * 137.46884 * 14 13 12 16 16 C 1.47959 * 111.00288 * 170.00199 * 13 12 10 17 17 H 1.09000 * 113.75892 * 336.83833 * 16 13 12 18 18 C 1.52997 * 113.76184 * 108.10022 * 16 13 12 19 19 N 1.46500 * 109.46883 * 303.01724 * 18 16 13 20 20 C 1.34774 * 120.00150 * 180.02562 * 19 18 16 21 21 O 1.21287 * 120.00148 * 0.02562 * 20 19 18 22 22 C 1.50699 * 120.00535 * 179.97438 * 20 19 18 23 23 O 1.42900 * 109.47567 * 180.02562 * 22 20 19 24 24 C 1.42899 * 113.99647 * 180.02562 * 23 22 20 25 25 C 1.54894 * 110.75348 * 150.00266 * 24 23 22 26 26 C 1.54266 * 104.31305 * 156.31802 * 25 24 23 27 27 C 1.53869 * 106.60031 * 336.32486 * 26 25 24 28 28 C 1.54266 * 106.59800 * 359.97438 * 27 26 25 29 29 H 0.97000 * 120.00353 * 0.02562 * 1 2 3 30 30 H 0.96995 * 120.00668 * 359.97438 * 9 7 2 31 31 H 1.09006 * 109.47421 * 59.99693 * 12 10 9 32 32 H 1.09001 * 109.47502 * 299.99689 * 12 10 9 33 33 H 1.08996 * 113.65270 * 23.14439 * 14 13 12 34 34 H 1.08994 * 113.92329 * 251.82350 * 14 13 12 35 35 H 1.09013 * 113.73271 * 222.01530 * 15 14 13 36 36 H 1.08996 * 113.83417 * 90.74738 * 15 14 13 37 37 H 1.08998 * 109.47424 * 183.01959 * 18 16 13 38 38 H 1.08996 * 109.47549 * 63.01789 * 18 16 13 39 39 H 0.97000 * 120.00080 * 0.02562 * 19 18 16 40 40 H 1.09006 * 109.46870 * 59.99459 * 22 20 19 41 41 H 1.09005 * 109.46876 * 300.00217 * 22 20 19 42 42 H 1.08993 * 110.82239 * 26.65876 * 24 23 22 43 43 H 1.09002 * 110.48891 * 37.57228 * 25 24 23 44 44 H 1.08998 * 110.48494 * 275.06315 * 25 24 23 45 45 H 1.09001 * 110.03084 * 95.60669 * 26 25 24 46 46 H 1.08996 * 110.03108 * 216.98559 * 26 25 24 47 47 H 1.08999 * 110.04012 * 119.28327 * 27 26 25 48 48 H 1.09003 * 110.03070 * 240.71854 * 27 26 25 49 49 H 1.09005 * 110.48526 * 142.29451 * 28 27 26 50 50 H 1.09007 * 110.48724 * 264.79935 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6963 -1.2126 5 1 1.2831 2.7464 -0.0006 6 1 3.1019 1.6965 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0001 12 6 1.2439 -4.8629 0.0011 13 7 2.1984 -5.9795 0.0016 14 6 2.8920 -6.0870 1.3067 15 6 2.6837 -7.6067 1.1770 16 6 1.5090 -7.2664 0.2420 17 1 0.5537 -7.1634 0.7566 18 6 1.4268 -8.1623 -0.9955 19 7 0.7552 -7.4390 -2.0781 20 6 0.5684 -8.0351 -3.2724 21 8 0.9559 -9.1705 -3.4507 22 6 -0.1229 -7.2913 -4.3859 23 8 -0.2007 -8.1284 -5.5415 24 6 -0.8419 -7.5148 -6.6614 25 6 -0.2733 -8.0695 -7.9912 26 6 -1.3974 -7.8238 -9.0187 27 6 -2.7098 -7.7315 -8.2207 28 6 -2.3375 -7.9251 -6.7362 29 1 -0.4851 0.8400 -0.0004 30 1 0.3534 -2.3907 0.0005 31 1 0.6168 -4.9209 -0.8886 32 1 0.6176 -4.9206 0.8914 33 1 2.3414 -5.6372 2.1329 34 1 3.9383 -5.7832 1.2776 35 1 2.3793 -8.0888 2.1062 36 1 3.5048 -8.1230 0.6798 37 1 0.8619 -9.0629 -0.7552 38 1 2.4327 -8.4380 -1.3120 39 1 0.4450 -6.5311 -1.9355 40 1 0.4418 -6.3906 -4.6266 41 1 -1.1288 -7.0157 -4.0690 42 1 -0.7400 -6.4305 -6.6201 43 1 -0.0646 -9.1356 -7.9017 44 1 0.6287 -7.5277 -8.2757 45 1 -1.2184 -6.8901 -9.5519 46 1 -1.4461 -8.6531 -9.7243 47 1 -3.1677 -6.7532 -8.3667 48 1 -3.3960 -8.5166 -8.5385 49 1 -2.9426 -7.2757 -6.1034 50 1 -2.4647 -8.9674 -6.4437 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483633708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:52 Heat of formation + Delta-G solvation = -116.306884 kcal Electronic energy + Delta-G solvation = -29314.966394 eV Core-core repulsion = 25148.846258 eV Total energy + Delta-G solvation = -4166.120136 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.49843 -40.65595 -39.65247 -39.36402 -36.86871 -35.97002 -35.55527 -33.32463 -32.04764 -30.68207 -29.63664 -28.91398 -27.51313 -27.36888 -25.29258 -24.10408 -21.86129 -21.63550 -21.15638 -21.07481 -20.56604 -19.90459 -18.39420 -18.26203 -17.74502 -17.27810 -16.89392 -16.78744 -16.54805 -16.46995 -16.18674 -15.67570 -15.63668 -15.38055 -15.19758 -14.88649 -14.53026 -14.27435 -14.07892 -13.78669 -13.52151 -13.42949 -13.20309 -13.09299 -12.91480 -12.77646 -12.48738 -12.44540 -12.32908 -12.13997 -12.11648 -12.04074 -11.86828 -11.73418 -11.53942 -11.48783 -11.27492 -10.88889 -10.54646 -10.32915 -10.10370 -10.00957 -9.66830 -8.46861 -5.94900 1.38770 1.41540 1.51475 1.54402 1.79372 2.05526 2.28077 2.72158 2.98289 3.19739 3.28526 3.59414 3.62219 3.68618 3.76670 3.77160 4.02414 4.07181 4.16713 4.20488 4.24249 4.29634 4.30483 4.37876 4.44397 4.50918 4.52528 4.59833 4.64398 4.67334 4.76629 4.86404 4.90529 4.92351 5.00300 5.06882 5.13498 5.20370 5.22439 5.27909 5.33252 5.41035 5.45931 5.48539 5.92376 6.10273 6.13781 6.49323 6.60824 7.13441 7.17578 7.56785 8.13154 8.70073 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008250 B = 0.002560 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3393.246220 B =10935.098825 C =13741.179175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.010 4.010 3 Si 0.988 3.012 4 H -0.274 1.274 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.332 4.332 8 H 0.076 0.924 9 N -0.573 5.573 10 C 0.440 3.560 11 O -0.619 6.619 12 C 0.022 3.978 13 N -0.475 5.475 14 C 0.011 3.989 15 C -0.118 4.118 16 C 0.021 3.979 17 H 0.110 0.890 18 C 0.146 3.854 19 N -0.711 5.711 20 C 0.511 3.489 21 O -0.573 6.573 22 C 0.042 3.958 23 O -0.382 6.382 24 C 0.070 3.930 25 C -0.125 4.125 26 C -0.120 4.120 27 C -0.121 4.121 28 C -0.145 4.145 29 H 0.278 0.722 30 H 0.397 0.603 31 H 0.108 0.892 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.057 0.943 39 H 0.408 0.592 40 H 0.096 0.904 41 H 0.107 0.893 42 H 0.085 0.915 43 H 0.062 0.938 44 H 0.071 0.929 45 H 0.076 0.924 46 H 0.074 0.926 47 H 0.076 0.924 48 H 0.072 0.928 49 H 0.076 0.924 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.830 -15.157 -8.251 19.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.210 4.210 3 Si 0.812 3.188 4 H -0.199 1.199 5 H -0.195 1.195 6 H -0.199 1.199 7 C -0.462 4.462 8 H 0.094 0.906 9 N -0.210 5.210 10 C 0.228 3.772 11 O -0.505 6.505 12 C -0.110 4.110 13 N -0.198 5.198 14 C -0.117 4.117 15 C -0.156 4.156 16 C -0.088 4.088 17 H 0.128 0.872 18 C 0.022 3.978 19 N -0.365 5.365 20 C 0.297 3.703 21 O -0.452 6.452 22 C -0.037 4.037 23 O -0.301 6.301 24 C 0.013 3.987 25 C -0.163 4.163 26 C -0.157 4.157 27 C -0.158 4.158 28 C -0.183 4.183 29 H 0.087 0.913 30 H 0.231 0.769 31 H 0.126 0.874 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.122 0.878 36 H 0.111 0.889 37 H 0.102 0.898 38 H 0.075 0.925 39 H 0.245 0.755 40 H 0.114 0.886 41 H 0.125 0.875 42 H 0.103 0.897 43 H 0.081 0.919 44 H 0.090 0.910 45 H 0.094 0.906 46 H 0.092 0.908 47 H 0.094 0.906 48 H 0.091 0.909 49 H 0.094 0.906 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.458 -15.876 -8.995 19.712 hybrid contribution -0.584 1.728 0.819 2.000 sum -8.043 -14.148 -8.176 18.212 Atomic orbital electron populations 1.69646 1.06652 1.29312 1.50309 1.25952 0.96512 1.02162 0.96369 0.85063 0.77848 0.77040 0.78863 1.19889 1.19453 1.19855 1.19565 0.92567 0.84089 1.49938 0.90617 1.41915 1.09287 1.04608 1.65226 1.20749 0.88248 0.85939 0.82304 1.90512 1.15886 1.87883 1.56210 1.22417 0.94958 0.89835 1.03758 1.68483 1.18796 1.00148 1.32389 1.23699 1.00504 0.96848 0.90694 1.23303 0.97255 0.94972 1.00044 1.23882 0.99064 0.90493 0.95403 0.87197 1.21291 0.97387 0.94360 0.84748 1.45790 1.59988 1.18815 1.11871 1.20723 0.79126 0.86557 0.83852 1.90690 1.51865 1.20275 1.82383 1.22372 1.02151 0.93444 0.85772 1.87993 1.80062 1.40818 1.21195 1.23544 0.92404 0.97381 0.85395 1.22438 0.99020 1.01563 0.93248 1.22074 0.93548 1.02797 0.97312 1.22053 0.97551 1.02819 0.93427 1.22882 0.95394 1.02002 0.98002 0.91297 0.76920 0.87361 0.90054 0.91264 0.91699 0.87767 0.88935 0.89782 0.92488 0.75506 0.88632 0.87501 0.89666 0.91908 0.91018 0.90553 0.90758 0.90555 0.90909 0.90576 0.91856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.82 13.05 21.66 0.28 -47.53 16 2 C -0.01 -0.52 5.50 84.93 0.47 -0.05 16 3 Si 0.99 41.98 29.55 68.60 2.03 44.00 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 6 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 7 C -0.33 -18.30 9.68 84.04 0.81 -17.49 16 8 H 0.08 4.50 7.16 -2.91 -0.02 4.48 16 9 N -0.57 -27.94 5.29 -306.98 -1.62 -29.56 16 10 C 0.44 19.81 7.59 87.66 0.67 20.48 16 11 O -0.62 -33.30 15.14 -3.07 -0.05 -33.35 16 12 C 0.02 0.67 5.10 85.56 0.44 1.10 16 13 N -0.47 -13.71 5.58 -885.25 -4.94 -18.64 16 14 C 0.01 0.32 6.77 86.36 0.59 0.90 16 15 C -0.12 -2.24 7.84 31.24 0.25 -1.99 16 16 C 0.02 0.41 3.43 45.02 0.15 0.57 16 17 H 0.11 1.68 7.79 -2.39 -0.02 1.66 16 18 C 0.15 3.15 5.83 86.38 0.50 3.65 16 19 N -0.71 -15.86 5.48 -463.07 -2.54 -18.40 16 20 C 0.51 13.60 7.91 87.66 0.69 14.29 16 21 O -0.57 -20.39 16.50 15.98 0.26 -20.13 16 22 C 0.04 0.87 6.26 71.24 0.45 1.32 16 23 O -0.38 -9.60 9.67 -129.94 -1.26 -10.86 16 24 C 0.07 1.29 3.41 32.02 0.11 1.40 16 25 C -0.12 -2.16 6.54 31.67 0.21 -1.95 16 26 C -0.12 -1.51 6.80 31.32 0.21 -1.30 16 27 C -0.12 -1.47 6.80 31.32 0.21 -1.26 16 28 C -0.14 -2.25 6.57 31.80 0.21 -2.04 16 29 H 0.28 13.60 8.31 -92.71 -0.77 12.83 16 30 H 0.40 18.13 7.90 -92.71 -0.73 17.40 16 31 H 0.11 2.71 6.52 -2.38 -0.02 2.70 16 32 H 0.08 2.09 7.69 -2.39 -0.02 2.07 16 33 H 0.07 1.87 7.78 -2.39 -0.02 1.85 16 34 H 0.06 2.19 8.10 -2.39 -0.02 2.17 16 35 H 0.10 1.40 8.14 -2.38 -0.02 1.38 16 36 H 0.09 1.80 7.92 -2.39 -0.02 1.78 16 37 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.06 1.46 7.87 -2.39 -0.02 1.44 16 39 H 0.41 7.89 6.49 -92.71 -0.60 7.29 16 40 H 0.10 1.72 8.12 -2.38 -0.02 1.70 16 41 H 0.11 1.58 8.14 -2.38 -0.02 1.56 16 42 H 0.09 1.33 7.83 -2.39 -0.02 1.31 16 43 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 49 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 50 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 Total: -1.00 -75.43 406.66 -2.25 -77.68 By element: Atomic # 1 Polarization: 39.54 SS G_CDS: -0.38 Total: 39.16 kcal Atomic # 6 Polarization: 11.67 SS G_CDS: 5.96 Total: 17.63 kcal Atomic # 7 Polarization: -105.32 SS G_CDS: -8.82 Total: -114.14 kcal Atomic # 8 Polarization: -63.30 SS G_CDS: -1.04 Total: -64.34 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.00 kcal Total: -75.43 -2.25 -77.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483633708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.625 kcal (2) G-P(sol) polarization free energy of solvation -75.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds