Wall clock time and date at job start Sat Apr 11 2020 05:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 120.00179 * 2 1 4 4 H 1.48499 * 109.47373 * 270.00553 * 3 2 1 5 5 H 1.48503 * 109.46638 * 30.00261 * 3 2 1 6 6 H 1.48494 * 109.47241 * 149.99898 * 3 2 1 7 7 C 1.38818 * 120.00012 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99661 * 191.00030 * 7 2 1 9 9 N 1.36929 * 119.99717 * 11.00154 * 7 2 1 10 10 C 1.46936 * 120.62861 * 211.67045 * 9 7 2 11 11 C 1.53192 * 108.77439 * 233.62777 * 10 9 7 12 12 C 1.53039 * 109.31622 * 305.36912 * 11 10 9 13 13 C 1.53032 * 109.54015 * 61.35997 * 12 11 10 14 14 C 1.52999 * 109.49798 * 178.65207 * 13 12 11 15 15 O 1.42904 * 109.47344 * 180.62876 * 14 13 12 16 16 N 1.46505 * 109.49414 * 58.59087 * 13 12 11 17 17 C 1.34779 * 120.00374 * 62.95707 * 16 13 12 18 18 O 1.21286 * 119.99473 * 354.87809 * 17 16 13 19 19 C 1.50697 * 120.00394 * 174.87870 * 17 16 13 20 20 C 1.52995 * 109.47366 * 179.97438 * 19 17 16 21 21 H 1.09000 * 109.59856 * 55.32287 * 20 19 17 22 22 C 1.53346 * 109.60454 * 175.81643 * 20 19 17 23 23 C 1.53081 * 108.41249 * 187.30281 * 22 20 19 24 24 C 1.50179 * 109.88938 * 311.08585 * 23 22 20 25 25 O 1.21274 * 118.24427 * 197.56123 * 24 23 22 26 26 N 1.33350 * 123.50776 * 17.57953 * 24 23 22 27 27 C 1.45753 * 124.10822 * 357.80489 * 26 24 23 28 28 C 1.46994 * 120.61809 * 31.69299 * 9 7 2 29 29 H 0.97001 * 119.99663 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.58214 * 113.84210 * 10 9 7 31 31 H 1.08999 * 109.58280 * 353.42062 * 10 9 7 32 32 H 1.08994 * 109.49599 * 185.41173 * 11 10 9 33 33 H 1.09007 * 109.52087 * 65.33734 * 11 10 9 34 34 H 1.09000 * 109.45449 * 301.34001 * 12 11 10 35 35 H 1.09001 * 109.44954 * 181.38149 * 12 11 10 36 36 H 1.09003 * 109.47075 * 300.62395 * 14 13 12 37 37 H 1.08999 * 109.47261 * 60.62843 * 14 13 12 38 38 H 0.96695 * 114.00048 * 180.02562 * 15 14 13 39 39 H 0.97002 * 119.99904 * 242.95384 * 16 13 12 40 40 H 1.09002 * 109.47096 * 300.00144 * 19 17 16 41 41 H 1.09002 * 109.46866 * 59.99776 * 19 17 16 42 42 H 1.08997 * 109.66826 * 307.01972 * 22 20 19 43 43 H 1.09000 * 109.67472 * 67.55008 * 22 20 19 44 44 H 1.08996 * 109.40173 * 190.95415 * 23 22 20 45 45 H 1.08996 * 109.40322 * 71.21194 * 23 22 20 46 46 H 0.96996 * 117.94961 * 177.77523 * 26 24 23 47 47 H 1.09005 * 109.29879 * 258.73997 * 27 26 24 48 48 H 1.08994 * 109.13728 * 139.25866 * 27 26 24 49 49 H 1.08993 * 109.63076 * 6.59967 * 28 9 7 50 50 H 1.09003 * 109.58555 * 246.14445 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0753 -1.2108 0.1779 9 7 1.3445 -2.3770 -0.2274 10 6 1.7941 -3.6260 0.4027 11 6 1.9934 -4.6840 -0.6872 12 6 0.7056 -4.8195 -1.5028 13 6 0.3849 -3.4845 -2.1785 14 6 -0.8842 -3.6302 -3.0206 15 8 -1.1751 -2.3873 -3.6630 16 7 1.5020 -3.0925 -3.0416 17 6 1.8406 -3.8605 -4.0961 18 8 1.2826 -4.9221 -4.2772 19 6 2.9125 -3.4004 -5.0502 20 6 3.1018 -4.4484 -6.1486 21 1 2.1470 -4.6424 -6.6374 22 6 4.1164 -3.9370 -7.1784 23 6 4.1489 -4.9176 -8.3534 24 6 4.2890 -6.3228 -7.8424 25 8 4.6521 -7.1819 -8.6176 26 7 4.0351 -6.6765 -6.5820 27 6 3.6367 -5.7433 -5.5357 28 6 0.1667 -2.4124 -1.1062 29 1 -0.4850 0.8401 0.0004 30 1 1.0408 -3.9692 1.1118 31 1 2.7368 -3.4543 0.9223 32 1 2.2339 -5.6414 -0.2250 33 1 2.8096 -4.3816 -1.3434 34 1 -0.1150 -5.0984 -0.8418 35 1 0.8370 -5.5893 -2.2633 36 1 -0.7331 -4.4024 -3.7749 37 1 -1.7177 -3.9099 -2.3762 38 1 -1.9689 -2.4060 -4.2147 39 1 1.9979 -2.2802 -2.8541 40 1 2.6166 -2.4522 -5.4992 41 1 3.8492 -3.2692 -4.5084 42 1 3.8151 -2.9509 -7.5318 43 1 5.1044 -3.8777 -6.7220 44 1 4.9946 -4.6811 -8.9991 45 1 3.2242 -4.8303 -8.9237 46 1 4.1206 -7.6136 -6.3467 47 1 4.4987 -5.5158 -4.9085 48 1 2.8583 -6.2015 -4.9256 49 1 0.0357 -1.4407 -1.5823 50 1 -0.7193 -2.6569 -0.5202 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501328107.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:10 Heat of formation + Delta-G solvation = -113.216436 kcal Electronic energy + Delta-G solvation = -31873.537537 eV Core-core repulsion = 27707.551413 eV Total energy + Delta-G solvation = -4165.986124 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.61365 -39.87007 -37.86669 -36.49821 -35.92403 -33.74461 -33.54608 -32.61645 -31.54817 -30.23049 -29.76917 -26.72216 -25.49727 -25.11019 -24.60804 -22.45404 -22.19504 -20.90759 -20.01622 -19.21362 -18.65389 -17.27155 -17.13663 -16.78809 -16.73900 -16.08755 -15.70232 -15.43504 -15.05605 -14.71333 -14.35273 -14.28583 -14.05566 -13.84613 -13.57275 -13.52404 -13.27293 -13.04697 -12.89768 -12.64887 -12.36915 -12.14009 -11.92556 -11.71119 -11.60669 -11.26672 -11.21548 -11.12921 -11.02450 -10.96519 -10.81387 -10.51316 -10.25285 -10.02284 -9.91940 -9.84039 -9.65720 -9.60340 -9.18522 -8.93652 -8.58201 -8.39761 -6.70767 -5.86856 -3.36370 2.52898 2.99731 3.20000 3.30265 3.37896 3.39208 3.60880 4.37470 4.40162 4.47058 4.53806 4.60248 4.64478 5.00690 5.13035 5.22995 5.25463 5.34331 5.37728 5.44309 5.49191 5.55359 5.56777 5.59811 5.65279 5.68550 5.77805 5.80249 5.91017 5.95912 6.08027 6.10880 6.26513 6.34637 6.45673 6.47284 6.61807 6.64281 6.77917 6.93514 7.03185 7.22321 7.28859 7.61584 7.72041 8.01879 8.08980 8.14104 8.39193 8.68976 9.12518 9.73955 10.33023 11.20505 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014408 B = 0.003255 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.874289 B = 8599.402939 C = 9108.568839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.009 3.991 3 Si 0.903 3.097 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.261 4.261 8 H 0.065 0.935 9 N -0.590 5.590 10 C 0.142 3.858 11 C -0.127 4.127 12 C -0.119 4.119 13 C 0.156 3.844 14 C 0.068 3.932 15 O -0.560 6.560 16 N -0.684 5.684 17 C 0.511 3.489 18 O -0.559 6.559 19 C -0.137 4.137 20 C -0.083 4.083 21 H 0.088 0.912 22 C -0.122 4.122 23 C -0.134 4.134 24 C 0.518 3.482 25 O -0.569 6.569 26 N -0.715 5.715 27 C 0.107 3.893 28 C 0.177 3.823 29 H 0.255 0.745 30 H 0.017 0.983 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.043 0.957 38 H 0.367 0.633 39 H 0.409 0.591 40 H 0.099 0.901 41 H 0.094 0.906 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.099 0.901 45 H 0.100 0.900 46 H 0.398 0.602 47 H 0.061 0.939 48 H 0.101 0.899 49 H 0.104 0.896 50 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.575 -7.083 -10.364 13.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.191 4.191 3 Si 0.733 3.267 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.391 4.391 8 H 0.083 0.917 9 N -0.313 5.313 10 C 0.015 3.985 11 C -0.166 4.166 12 C -0.158 4.158 13 C 0.068 3.932 14 C -0.011 4.011 15 O -0.363 6.363 16 N -0.333 5.333 17 C 0.297 3.703 18 O -0.440 6.440 19 C -0.177 4.177 20 C -0.103 4.103 21 H 0.107 0.893 22 C -0.160 4.160 23 C -0.174 4.174 24 C 0.305 3.695 25 O -0.449 6.449 26 N -0.366 5.366 27 C -0.017 4.017 28 C 0.050 3.950 29 H 0.066 0.934 30 H 0.034 0.966 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.212 0.788 39 H 0.244 0.756 40 H 0.117 0.883 41 H 0.112 0.888 42 H 0.098 0.902 43 H 0.091 0.909 44 H 0.118 0.882 45 H 0.118 0.882 46 H 0.233 0.767 47 H 0.079 0.921 48 H 0.119 0.881 49 H 0.122 0.878 50 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 3.772 -7.644 -10.555 13.567 hybrid contribution 0.001 0.832 0.161 0.848 sum 3.773 -6.812 -10.393 12.987 Atomic orbital electron populations 1.69959 1.05248 1.25676 1.53220 1.25196 0.95355 0.98421 1.00113 0.86293 0.79050 0.83658 0.77715 1.21324 1.21723 1.20464 1.19141 0.90891 0.83775 1.45257 0.91741 1.44031 1.32655 1.03628 1.50988 1.20985 0.97619 0.87176 0.92687 1.21905 0.97174 0.98716 0.98794 1.21735 0.98294 0.96798 0.98952 1.21213 0.83704 0.97490 0.90779 1.22577 0.96501 0.86163 0.95861 1.86578 1.48801 1.34207 1.66738 1.45896 1.33532 1.26942 1.26939 1.20450 0.83689 0.84402 0.81723 1.90545 1.55606 1.22933 1.74885 1.21688 0.99471 1.00144 0.96427 1.21154 0.99799 0.93779 0.95535 0.89343 1.21776 1.00000 0.99076 0.95100 1.21621 1.05225 0.91226 0.99283 1.20215 0.76056 0.91406 0.81824 1.90741 1.48015 1.51613 1.54566 1.45502 1.69014 1.12291 1.09760 1.21707 1.00267 0.90341 0.89337 1.21010 0.88718 0.97098 0.88158 0.93448 0.96555 0.92910 0.93277 0.92524 0.92297 0.91052 0.92235 0.93919 0.78796 0.75568 0.88307 0.88796 0.90150 0.90941 0.88219 0.88224 0.76708 0.92077 0.88093 0.87805 0.95300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.58 11.09 55.49 0.62 -23.96 16 2 C 0.01 0.23 5.04 -17.43 -0.09 0.14 16 3 Si 0.90 20.36 29.57 -169.99 -5.03 15.33 16 4 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.26 -6.53 9.58 -15.06 -0.14 -6.67 16 8 H 0.06 1.59 7.85 -52.49 -0.41 1.18 16 9 N -0.59 -13.42 2.85 -172.26 -0.49 -13.91 16 10 C 0.14 2.78 6.52 -3.70 -0.02 2.76 16 11 C -0.13 -2.10 5.93 -26.61 -0.16 -2.26 16 12 C -0.12 -1.98 4.52 -26.69 -0.12 -2.10 16 13 C 0.16 2.75 0.45 -131.70 -0.06 2.69 16 14 C 0.07 1.11 5.68 37.16 0.21 1.32 16 15 O -0.56 -9.19 12.98 -35.23 -0.46 -9.64 16 16 N -0.68 -11.00 4.04 -47.50 -0.19 -11.19 16 17 C 0.51 7.13 6.99 -10.99 -0.08 7.06 16 18 O -0.56 -8.68 10.28 5.55 0.06 -8.62 16 19 C -0.14 -1.38 5.18 -27.89 -0.14 -1.52 16 20 C -0.08 -0.78 1.90 -90.48 -0.17 -0.95 16 21 H 0.09 0.95 7.95 -51.93 -0.41 0.54 16 22 C -0.12 -0.92 5.33 -26.51 -0.14 -1.07 16 23 C -0.13 -1.17 6.03 -28.09 -0.17 -1.34 16 24 C 0.52 6.22 7.71 -11.87 -0.09 6.13 16 25 O -0.57 -9.10 17.78 5.56 0.10 -9.00 16 26 N -0.72 -7.53 5.45 -61.39 -0.33 -7.86 16 27 C 0.11 1.06 6.10 -4.48 -0.03 1.04 16 28 C 0.18 3.87 3.76 -3.67 -0.01 3.86 16 29 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 30 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 1.02 7.93 -51.93 -0.41 0.61 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.95 7.53 -51.93 -0.39 0.56 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 1.19 6.26 -51.93 -0.32 0.86 16 36 H 0.06 0.97 6.16 -51.93 -0.32 0.65 16 37 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.37 4.26 9.12 45.56 0.42 4.68 16 39 H 0.41 7.00 8.43 -40.82 -0.34 6.66 16 40 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.09 0.84 8.12 -51.93 -0.42 0.42 16 42 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.52 8.13 -51.93 -0.42 0.10 16 44 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.40 3.93 8.80 -40.82 -0.36 3.57 16 47 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 48 H 0.10 1.18 6.17 -51.93 -0.32 0.86 16 49 H 0.10 2.62 5.88 -51.93 -0.31 2.31 16 50 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 384.09 15.07 5.79 5.79 Total: -1.00 -31.35 384.09 -8.55 -39.91 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: -7.39 Total: 14.10 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: -1.22 Total: 9.08 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: -0.40 Total: -56.93 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -0.30 Total: -27.27 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.03 Total: 15.33 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.35 -8.55 -39.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501328107.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.311 kcal (2) G-P(sol) polarization free energy of solvation -31.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds