Wall clock time and date at job start Sat Apr 11 2020 05:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86797 * 119.99950 * 2 1 4 4 H 1.48499 * 109.47214 * 270.00014 * 3 2 1 5 5 H 1.48499 * 109.47090 * 29.99881 * 3 2 1 6 6 H 1.48497 * 109.47240 * 150.00238 * 3 2 1 7 7 C 1.38949 * 120.00014 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00028 * 359.97438 * 7 2 1 9 9 N 1.37102 * 119.99998 * 180.02562 * 7 2 1 10 10 C 1.34775 * 119.99966 * 180.02562 * 9 7 2 11 11 O 1.21301 * 120.00046 * 359.97438 * 10 9 7 12 12 C 1.50694 * 119.99811 * 179.97438 * 10 9 7 13 13 N 1.46911 * 109.46926 * 179.97438 * 12 10 9 14 14 C 1.46897 * 110.99809 * 180.02562 * 13 12 10 15 15 C 1.52995 * 109.46964 * 180.02562 * 14 13 12 16 16 H 1.08995 * 112.91121 * 43.74765 * 15 14 13 17 17 C 1.53785 * 113.61328 * 175.00155 * 15 14 13 18 18 C 1.53781 * 87.08277 * 139.98018 * 17 15 14 19 19 H 1.09002 * 113.61228 * 220.01683 * 18 17 15 20 20 N 1.46500 * 113.61711 * 89.19510 * 18 17 15 21 21 C 1.34778 * 119.99919 * 156.52821 * 20 18 17 22 22 O 1.21277 * 119.99902 * 0.02562 * 21 20 18 23 23 C 1.50701 * 119.99998 * 180.02562 * 21 20 18 24 24 C 1.53180 * 109.54404 * 299.82680 * 23 21 20 25 25 C 1.53108 * 109.15368 * 183.23990 * 24 23 21 26 26 O 1.42901 * 109.48906 * 57.47464 * 25 24 23 27 27 C 1.42911 * 114.09651 * 298.88884 * 26 25 24 28 28 C 1.53087 * 109.41650 * 61.15806 * 27 26 25 29 29 C 1.53776 * 113.61424 * 272.49277 * 15 14 13 30 30 H 0.97001 * 119.99698 * 359.97438 * 1 2 3 31 31 H 0.96996 * 120.00044 * 359.97438 * 9 7 2 32 32 H 1.09007 * 109.47196 * 60.00136 * 12 10 9 33 33 H 1.08992 * 109.47248 * 299.99552 * 12 10 9 34 34 H 1.00896 * 110.99465 * 303.95241 * 13 12 10 35 35 H 1.09000 * 109.47609 * 60.00163 * 14 13 12 36 36 H 1.09003 * 109.47202 * 299.99792 * 14 13 12 37 37 H 1.08993 * 113.61827 * 25.42377 * 17 15 14 38 38 H 1.09006 * 113.68471 * 254.53603 * 17 15 14 39 39 H 0.96998 * 119.99853 * 336.53388 * 20 18 17 40 40 H 1.09004 * 109.54097 * 60.00259 * 23 21 20 41 41 H 1.09001 * 109.51949 * 303.05776 * 24 23 21 42 42 H 1.08994 * 109.52042 * 63.24438 * 24 23 21 43 43 H 1.08994 * 109.40746 * 297.49006 * 25 24 23 44 44 H 1.09002 * 109.48424 * 177.50809 * 25 24 23 45 45 H 1.08999 * 109.47626 * 301.17093 * 27 26 25 46 46 H 1.08997 * 109.48367 * 181.14440 * 27 26 25 47 47 H 1.08999 * 109.52470 * 182.48505 * 28 27 26 48 48 H 1.08999 * 109.52465 * 62.29509 * 28 27 26 49 49 H 1.09003 * 113.61687 * 105.46892 * 29 15 14 50 50 H 1.09009 * 113.61565 * 334.57240 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1387 -0.0005 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3705 -0.0011 11 8 3.4473 -3.4210 -0.0020 12 6 5.5608 -2.3705 -0.0011 13 7 6.0505 -3.7556 -0.0017 14 6 7.5189 -3.7947 -0.0011 15 6 7.9902 -5.2503 -0.0024 16 1 7.4313 -5.8767 -0.6975 17 6 9.5155 -5.4037 -0.1247 18 6 9.4048 -6.5403 0.9053 19 1 10.2110 -6.5448 1.6389 20 7 9.1751 -7.8565 0.3044 21 6 9.5178 -8.9733 0.9766 22 8 10.0160 -8.8886 2.0791 23 6 9.2821 -10.3272 0.3582 24 6 7.7866 -10.5112 0.0822 25 6 7.5471 -11.9189 -0.4702 26 8 8.0346 -12.8861 0.4619 27 6 9.4369 -12.7918 0.7208 28 6 9.7521 -11.4202 1.3232 29 6 8.1211 -5.8566 1.4047 30 1 -0.4850 0.8401 0.0004 31 1 3.8649 -0.3633 0.0004 32 1 5.9241 -1.8574 0.8895 33 1 5.9241 -1.8559 -0.8905 34 1 5.6749 -4.2721 0.7795 35 1 7.8955 -3.2913 0.8894 36 1 7.8962 -3.2902 -0.8906 37 1 10.0718 -4.5391 0.2372 38 1 9.8446 -5.7370 -1.1090 39 1 8.7764 -7.9243 -0.5773 40 1 9.8374 -10.4028 -0.5767 41 1 7.2269 -10.3847 1.0090 42 1 7.4572 -9.7712 -0.6471 43 1 8.0732 -12.0302 -1.4183 44 1 6.4792 -12.0711 -0.6270 45 1 9.9878 -12.9147 -0.2117 46 1 9.7305 -13.5729 1.4221 47 1 10.8269 -11.3296 1.4805 48 1 9.2333 -11.3127 2.2757 49 1 7.3230 -6.5557 1.6549 50 1 8.2961 -5.1158 2.1849 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506877521.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:49 Heat of formation + Delta-G solvation = -103.752414 kcal Electronic energy + Delta-G solvation = -28805.720900 eV Core-core repulsion = 24640.145166 eV Total energy + Delta-G solvation = -4165.575733 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.93444 -39.69013 -38.59407 -38.25373 -35.35308 -34.28246 -33.91547 -33.15517 -31.66759 -31.50646 -28.76977 -26.61540 -26.03856 -25.50686 -24.02079 -23.58375 -22.24670 -21.75669 -20.33935 -19.60213 -19.28259 -18.34258 -17.78268 -16.73009 -16.46912 -16.28736 -16.03274 -15.69246 -15.47462 -15.24761 -15.14725 -14.80568 -14.40798 -14.26931 -14.00965 -13.91394 -13.70108 -13.37317 -13.16458 -12.91474 -12.80460 -12.71770 -12.46234 -12.15666 -11.99303 -11.81310 -11.78889 -11.68954 -11.23023 -11.18406 -11.06217 -10.93589 -10.71522 -10.60357 -10.35967 -10.32961 -9.98329 -9.85006 -9.58177 -9.34918 -8.60076 -8.20331 -8.14524 -6.31924 -3.83384 2.25466 2.73573 3.01426 3.05928 3.14076 3.44757 3.73217 4.00010 4.09043 4.09624 4.18177 4.22667 4.27883 4.43884 4.50052 4.59579 4.69324 4.71506 4.76169 4.90517 4.96586 5.06643 5.11794 5.20546 5.24411 5.24726 5.31803 5.37464 5.41945 5.47026 5.51282 5.54799 5.61004 5.61908 5.65311 5.79138 5.80673 5.83212 5.90959 5.92355 6.01544 6.33099 6.74190 7.09946 7.13110 7.56812 7.58530 7.86894 8.13733 8.59052 8.94161 9.41636 9.81999 10.81205 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019014 B = 0.001710 C = 0.001601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.251745 B =16374.049903 C =17489.408979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.041 3.959 3 Si 0.880 3.120 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.305 4.305 8 H 0.120 0.880 9 N -0.591 5.591 10 C 0.450 3.550 11 O -0.565 6.565 12 C 0.047 3.953 13 N -0.668 5.668 14 C 0.068 3.932 15 C -0.105 4.105 16 H 0.100 0.900 17 C -0.139 4.139 18 C 0.119 3.881 19 H 0.100 0.900 20 N -0.710 5.710 21 C 0.522 3.478 22 O -0.537 6.537 23 C -0.109 4.109 24 C -0.149 4.149 25 C 0.062 3.938 26 O -0.382 6.382 27 C 0.060 3.940 28 C -0.136 4.136 29 C -0.150 4.150 30 H 0.273 0.727 31 H 0.370 0.630 32 H 0.043 0.957 33 H 0.087 0.913 34 H 0.350 0.650 35 H 0.028 0.972 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.073 0.927 39 H 0.402 0.598 40 H 0.098 0.902 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.053 0.947 44 H 0.100 0.900 45 H 0.051 0.949 46 H 0.098 0.902 47 H 0.080 0.920 48 H 0.081 0.919 49 H 0.073 0.927 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.940 -17.793 -1.871 30.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.162 4.162 3 Si 0.707 3.293 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.434 4.434 8 H 0.137 0.863 9 N -0.230 5.230 10 C 0.235 3.765 11 O -0.447 6.447 12 C -0.085 4.085 13 N -0.301 5.301 14 C -0.061 4.061 15 C -0.124 4.124 16 H 0.118 0.882 17 C -0.177 4.177 18 C 0.014 3.986 19 H 0.118 0.882 20 N -0.361 5.361 21 C 0.308 3.692 22 O -0.413 6.413 23 C -0.131 4.131 24 C -0.187 4.187 25 C -0.014 4.014 26 O -0.300 6.300 27 C -0.016 4.016 28 C -0.174 4.174 29 C -0.189 4.189 30 H 0.084 0.916 31 H 0.203 0.797 32 H 0.061 0.939 33 H 0.105 0.895 34 H 0.170 0.830 35 H 0.046 0.954 36 H 0.090 0.910 37 H 0.113 0.887 38 H 0.092 0.908 39 H 0.236 0.764 40 H 0.116 0.884 41 H 0.099 0.901 42 H 0.100 0.900 43 H 0.071 0.929 44 H 0.118 0.882 45 H 0.069 0.931 46 H 0.116 0.884 47 H 0.099 0.901 48 H 0.100 0.900 49 H 0.091 0.909 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 24.505 -18.526 -1.659 30.764 hybrid contribution 0.699 2.135 0.308 2.267 sum 25.204 -16.391 -1.351 30.095 Atomic orbital electron populations 1.69626 1.05635 1.27489 1.49376 1.25044 0.95503 0.97983 0.97662 0.86661 0.79733 0.84028 0.78888 1.19603 1.20182 1.19558 1.19437 0.79258 0.96638 1.48070 0.86288 1.42210 1.07537 1.06166 1.67116 1.19729 0.88239 0.84553 0.83956 1.90564 1.69458 1.30951 1.53705 1.21709 0.94994 0.90639 1.01198 1.60088 1.06112 1.12491 1.51370 1.21956 0.88459 0.95427 1.00292 1.22619 0.95196 0.96879 0.97686 0.88196 1.23333 0.96844 0.98167 0.99405 1.21822 0.98735 0.81590 0.96489 0.88213 1.45699 1.63972 1.05191 1.21268 1.20569 0.77219 0.85850 0.85573 1.90708 1.43341 1.87346 1.19899 1.21393 0.98415 0.92620 1.00629 1.22228 0.94203 0.98902 1.03378 1.22585 1.00510 0.86974 0.91379 1.87974 1.23476 1.54702 1.63878 1.22632 0.82134 0.96971 0.99907 1.22030 1.02712 0.93359 0.99320 1.23524 0.98063 1.00095 0.97213 0.91615 0.79698 0.93865 0.89524 0.83040 0.95356 0.91027 0.88708 0.90817 0.76351 0.88391 0.90118 0.90025 0.92880 0.88197 0.93078 0.88433 0.90133 0.90003 0.90852 0.89289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.76 13.96 55.50 0.77 -24.98 16 2 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 3 Si 0.88 19.32 27.74 -169.99 -4.71 14.61 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.39 6.52 56.52 0.37 -5.03 16 7 C -0.31 -8.66 10.16 -14.93 -0.15 -8.81 16 8 H 0.12 3.86 7.39 -52.48 -0.39 3.47 16 9 N -0.59 -14.08 5.09 -10.96 -0.06 -14.13 16 10 C 0.45 10.20 7.82 -10.99 -0.09 10.11 16 11 O -0.56 -15.18 15.78 5.54 0.09 -15.10 16 12 C 0.05 0.78 6.17 -4.97 -0.03 0.74 16 13 N -0.67 -10.01 6.13 -115.06 -0.70 -10.71 16 14 C 0.07 0.73 5.52 -3.83 -0.02 0.71 16 15 C -0.11 -0.92 3.79 -89.81 -0.34 -1.26 16 16 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 17 C -0.14 -0.95 7.38 -25.92 -0.19 -1.14 16 18 C 0.12 0.98 4.30 -67.12 -0.29 0.69 16 19 H 0.10 0.96 7.50 -51.93 -0.39 0.57 16 20 N -0.71 -5.28 5.18 -53.02 -0.27 -5.56 16 21 C 0.52 4.81 7.16 -10.98 -0.08 4.74 16 22 O -0.54 -7.11 15.59 5.56 0.09 -7.02 16 23 C -0.11 -0.72 2.61 -91.58 -0.24 -0.96 16 24 C -0.15 -0.91 5.30 -26.58 -0.14 -1.05 16 25 C 0.06 0.38 6.84 37.21 0.25 0.63 16 26 O -0.38 -3.18 10.77 -35.23 -0.38 -3.56 16 27 C 0.06 0.37 6.84 37.20 0.25 0.63 16 28 C -0.14 -0.98 4.74 -26.59 -0.13 -1.11 16 29 C -0.15 -1.37 7.43 -25.92 -0.19 -1.57 16 30 H 0.27 7.36 8.31 -40.82 -0.34 7.03 16 31 H 0.37 7.72 5.76 -40.82 -0.24 7.49 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.35 5.56 8.43 -39.29 -0.33 5.23 16 35 H 0.03 0.29 7.84 -51.93 -0.41 -0.12 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.09 0.59 8.10 -51.93 -0.42 0.17 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.40 2.12 8.20 -40.82 -0.33 1.79 16 40 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.08 0.38 7.68 -51.93 -0.40 -0.02 16 43 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 44 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 46 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 48 H 0.08 0.75 8.03 -51.93 -0.42 0.34 16 49 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 50 H 0.09 0.80 7.90 -51.92 -0.41 0.39 16 LS Contribution 403.50 15.07 6.08 6.08 Total: -1.00 -35.36 403.50 -8.97 -44.33 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: -8.40 Total: 12.66 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: -1.47 Total: 3.38 kcal Atomic # 7 Polarization: -55.13 SS G_CDS: -0.26 Total: -55.39 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.21 Total: -25.68 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -4.71 Total: 14.61 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.36 -8.97 -44.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506877521.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.421 kcal (2) G-P(sol) polarization free energy of solvation -35.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds