Wall clock time and date at job start Sat Apr 11 2020 05:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86807 * 119.99975 * 2 1 4 4 H 1.48496 * 109.47186 * 239.99877 * 3 2 1 5 5 H 1.48492 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46662 * 119.99648 * 3 2 1 7 7 C 1.38948 * 119.99949 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99851 * 180.02562 * 7 2 1 9 9 N 1.37093 * 120.00270 * 0.02562 * 7 2 1 10 10 C 1.34776 * 120.00456 * 180.02562 * 9 7 2 11 11 O 1.21295 * 119.99605 * 0.02562 * 10 9 7 12 12 C 1.50702 * 120.00218 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.47160 * 181.33036 * 12 10 9 14 14 C 1.46893 * 111.00046 * 162.31120 * 13 12 10 15 15 C 1.53004 * 109.47105 * 189.99844 * 14 13 12 16 16 N 1.46506 * 109.46785 * 180.02562 * 15 14 13 17 17 C 1.34778 * 119.99409 * 180.02562 * 16 15 14 18 18 O 1.21273 * 120.00349 * 359.97438 * 17 16 15 19 19 C 1.50700 * 119.99461 * 180.02562 * 17 16 15 20 20 H 1.08999 * 109.52432 * 299.99409 * 19 17 16 21 21 C 1.53179 * 109.51891 * 179.87353 * 19 17 16 22 22 C 1.53181 * 109.03721 * 183.11359 * 21 19 17 23 23 C 1.53098 * 109.16249 * 56.97678 * 22 21 19 24 24 O 1.42900 * 109.41406 * 302.39341 * 23 22 21 25 25 C 1.42902 * 114.15509 * 61.12472 * 24 23 22 26 26 C 1.46900 * 110.99772 * 286.27053 * 13 12 10 27 27 C 1.53003 * 117.50092 * 3.78224 * 26 13 12 28 28 C 1.53002 * 117.49715 * 295.11913 * 26 13 12 29 29 H 0.97004 * 120.00141 * 0.02562 * 1 2 3 30 30 H 0.97000 * 120.00251 * 0.02562 * 9 7 2 31 31 H 1.08999 * 109.47175 * 61.32978 * 12 10 9 32 32 H 1.09002 * 109.46949 * 301.33008 * 12 10 9 33 33 H 1.09006 * 109.46757 * 70.00377 * 14 13 12 34 34 H 1.09000 * 109.47328 * 310.00379 * 14 13 12 35 35 H 1.08997 * 109.46621 * 60.00502 * 15 14 13 36 36 H 1.09002 * 109.47010 * 300.00195 * 15 14 13 37 37 H 0.96993 * 119.99951 * 359.97438 * 16 15 14 38 38 H 1.09004 * 109.54206 * 302.97516 * 21 19 17 39 39 H 1.08997 * 109.54436 * 63.15608 * 21 19 17 40 40 H 1.08993 * 109.52641 * 176.88405 * 22 21 19 41 41 H 1.09003 * 109.52089 * 297.07539 * 22 21 19 42 42 H 1.08999 * 109.47992 * 62.37719 * 23 22 21 43 43 H 1.09002 * 109.47496 * 182.41150 * 23 22 21 44 44 H 1.09004 * 109.53874 * 178.91946 * 25 24 23 45 45 H 1.09004 * 109.42993 * 58.88734 * 25 24 23 46 46 H 1.09003 * 115.54909 * 149.45785 * 26 13 12 47 47 H 1.08995 * 117.49870 * 0.02562 * 27 26 13 48 48 H 1.08995 * 117.49422 * 145.02190 * 27 26 13 49 49 H 1.08994 * 117.50180 * 214.98049 * 28 26 13 50 50 H 1.09003 * 117.50091 * 359.97438 * 28 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6965 -1.2124 5 1 1.2832 2.7464 0.0006 6 1 3.1018 1.6964 1.2126 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0030 12 6 1.2437 -4.8630 0.0010 13 7 2.1980 -5.9793 0.0345 14 6 1.5381 -7.2235 0.4520 15 6 2.5952 -8.2977 0.7159 16 7 1.9370 -9.5388 1.1317 17 6 2.6750 -10.6291 1.4198 18 8 3.8839 -10.5830 1.3344 19 6 1.9979 -11.9059 1.8469 20 1 1.4258 -11.7278 2.7575 21 6 3.0551 -12.9829 2.1091 22 6 2.3524 -14.2963 2.4666 23 6 1.3995 -14.6814 1.3319 24 8 0.4621 -13.6240 1.1194 25 6 1.0576 -12.3826 0.7369 26 6 2.8599 -6.1452 -1.2664 27 6 2.5351 -5.1253 -2.3596 28 6 1.9878 -6.5517 -2.4560 29 1 -0.4850 0.8401 -0.0004 30 1 0.3534 -2.3907 -0.0002 31 1 0.6361 -4.9313 -0.9013 32 1 0.5983 -4.9102 0.8781 33 1 0.8663 -7.5610 -0.3373 34 1 0.9671 -7.0440 1.3630 35 1 3.2669 -7.9602 1.5051 36 1 3.1661 -8.4772 -0.1952 37 1 0.9702 -9.5755 1.2003 38 1 3.6605 -13.1252 1.2138 39 1 3.6942 -12.6730 2.9359 40 1 3.0955 -15.0822 2.6007 41 1 1.7867 -14.1672 3.3893 42 1 1.9707 -14.8497 0.4189 43 1 0.8650 -15.5928 1.5998 44 1 0.2776 -11.6382 0.5766 45 1 1.6235 -12.5205 -0.1845 46 1 3.8762 -6.5376 -1.2300 47 1 1.8305 -4.3309 -2.1134 48 1 3.3375 -4.8469 -3.0426 49 1 2.4305 -7.2110 -3.2025 50 1 0.9230 -6.6964 -2.2733 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663709942.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:53 Heat of formation + Delta-G solvation = -83.710902 kcal Electronic energy + Delta-G solvation = -29535.036350 eV Core-core repulsion = 25370.329682 eV Total energy + Delta-G solvation = -4164.706668 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.65951 -39.60095 -38.83427 -37.31662 -35.39745 -34.00496 -33.86989 -33.26568 -31.90807 -31.20037 -29.37968 -26.57373 -25.41960 -24.79236 -24.19713 -23.16491 -21.91282 -21.33547 -20.39214 -19.93263 -18.82490 -17.77900 -17.63447 -16.96508 -16.75155 -16.52013 -16.02850 -15.88636 -15.60814 -15.06133 -14.99922 -14.53586 -14.28935 -14.09855 -13.99036 -13.81401 -13.53300 -13.41072 -13.21330 -12.94187 -12.62378 -12.35176 -12.03753 -11.93991 -11.58165 -11.54413 -11.49939 -11.39259 -11.21722 -11.00344 -10.97559 -10.88186 -10.45540 -10.43256 -10.21401 -10.19221 -9.93431 -9.85210 -9.44946 -9.25301 -8.49046 -7.94784 -7.90290 -6.39804 -3.80340 2.36306 2.79439 3.21166 3.26673 3.31085 3.36119 3.86011 3.97144 4.06200 4.14961 4.23829 4.34781 4.36941 4.46729 4.63333 4.72557 4.80645 4.90420 4.96778 5.09711 5.10075 5.12405 5.15483 5.18253 5.20210 5.27324 5.30586 5.39191 5.39903 5.50167 5.65228 5.68072 5.74710 5.80292 5.84940 5.86352 5.95617 6.12492 6.22963 6.26587 6.29767 6.46112 6.64313 7.09825 7.23061 7.24252 7.56825 7.96642 8.07754 8.64410 9.20750 9.56445 10.09247 10.78018 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027472 B = 0.001808 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.966752 B =15484.737580 C =15546.701358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.296 4.296 8 H 0.102 0.898 9 N -0.569 5.569 10 C 0.447 3.553 11 O -0.567 6.567 12 C 0.039 3.961 13 N -0.480 5.480 14 C 0.047 3.953 15 C 0.124 3.876 16 N -0.728 5.728 17 C 0.519 3.481 18 O -0.533 6.533 19 C -0.144 4.144 20 H 0.107 0.893 21 C -0.103 4.103 22 C -0.157 4.157 23 C 0.056 3.944 24 O -0.377 6.377 25 C 0.072 3.928 26 C 0.042 3.958 27 C -0.166 4.166 28 C -0.228 4.228 29 H 0.271 0.729 30 H 0.390 0.610 31 H 0.054 0.946 32 H 0.087 0.913 33 H 0.041 0.959 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.399 0.601 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.052 0.948 43 H 0.096 0.904 44 H 0.099 0.901 45 H 0.057 0.943 46 H 0.121 0.879 47 H 0.104 0.896 48 H 0.095 0.905 49 H 0.092 0.908 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.933 -26.753 1.065 26.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.426 4.426 8 H 0.120 0.880 9 N -0.206 5.206 10 C 0.232 3.768 11 O -0.449 6.449 12 C -0.092 4.092 13 N -0.202 5.202 14 C -0.082 4.082 15 C 0.000 4.000 16 N -0.380 5.380 17 C 0.304 3.696 18 O -0.409 6.409 19 C -0.166 4.166 20 H 0.125 0.875 21 C -0.141 4.141 22 C -0.194 4.194 23 C -0.020 4.020 24 O -0.296 6.296 25 C -0.005 4.005 26 C -0.067 4.067 27 C -0.203 4.203 28 C -0.267 4.267 29 H 0.081 0.919 30 H 0.223 0.777 31 H 0.072 0.928 32 H 0.106 0.894 33 H 0.059 0.941 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.233 0.767 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.092 0.908 42 H 0.071 0.929 43 H 0.114 0.886 44 H 0.117 0.883 45 H 0.076 0.924 46 H 0.139 0.861 47 H 0.122 0.878 48 H 0.114 0.886 49 H 0.111 0.889 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.179 -26.439 1.392 26.502 hybrid contribution -1.081 0.877 -0.541 1.493 sum -2.260 -25.563 0.851 25.676 Atomic orbital electron populations 1.69600 1.05895 1.28155 1.50902 1.25232 0.95617 0.99627 0.97492 0.85936 0.78756 0.80592 0.79046 1.19969 1.21042 1.19943 1.19627 0.93290 0.82185 1.47487 0.88008 1.41847 1.09064 1.04522 1.65192 1.19592 0.88506 0.84288 0.84411 1.90545 1.13449 1.86772 1.54169 1.22014 0.93957 0.91645 1.01634 1.61448 1.29797 1.02217 1.26780 1.22254 0.95310 0.90069 1.00535 1.21284 0.95350 0.82013 1.01338 1.45995 1.10464 1.11986 1.69575 1.20368 0.87591 0.84572 0.77066 1.90731 1.14086 1.84338 1.51740 1.22033 0.98938 0.93805 1.01787 0.87516 1.21412 0.96507 0.92797 1.03386 1.22232 0.99434 0.98036 0.99721 1.22662 0.91734 0.90269 0.97367 1.87961 1.33206 1.19098 1.89287 1.22506 0.96349 0.86657 0.94999 1.22615 0.97928 1.03460 0.82675 1.23255 1.03634 0.92248 1.01143 1.23482 0.99926 0.99761 1.03539 0.91909 0.77656 0.92759 0.89446 0.94088 0.90182 0.90251 0.91040 0.76712 0.90845 0.90516 0.90327 0.90828 0.92922 0.88594 0.88312 0.92421 0.86090 0.87829 0.88608 0.88925 0.89462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.39 13.05 55.50 0.72 -23.66 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 21.05 29.55 -169.99 -5.02 16.03 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.30 -8.16 9.68 -14.94 -0.14 -8.31 16 8 H 0.10 2.95 7.16 -52.48 -0.38 2.57 16 9 N -0.57 -14.09 5.29 -10.96 -0.06 -14.15 16 10 C 0.45 10.24 5.84 -10.98 -0.06 10.17 16 11 O -0.57 -15.02 14.79 5.54 0.08 -14.94 16 12 C 0.04 0.66 5.00 -4.97 -0.02 0.64 16 13 N -0.48 -7.54 4.34 -228.08 -0.99 -8.53 16 14 C 0.05 0.53 4.96 -3.83 -0.02 0.51 16 15 C 0.12 1.41 5.67 -4.04 -0.02 1.39 16 16 N -0.73 -6.43 5.46 -60.29 -0.33 -6.76 16 17 C 0.52 5.39 7.16 -10.98 -0.08 5.31 16 18 O -0.53 -7.84 15.97 5.56 0.09 -7.75 16 19 C -0.14 -1.07 2.72 -91.63 -0.25 -1.32 16 20 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 21 C -0.10 -0.79 4.62 -26.55 -0.12 -0.91 16 22 C -0.16 -0.88 6.14 -26.59 -0.16 -1.05 16 23 C 0.06 0.33 6.84 37.21 0.25 0.58 16 24 O -0.38 -2.96 10.76 -35.23 -0.38 -3.33 16 25 C 0.07 0.48 6.01 37.20 0.22 0.71 16 26 C 0.04 0.65 4.55 -67.71 -0.31 0.34 16 27 C -0.17 -2.70 8.48 -26.69 -0.23 -2.93 16 28 C -0.23 -2.92 9.27 -26.69 -0.25 -3.17 16 29 H 0.27 6.96 8.31 -40.82 -0.34 6.63 16 30 H 0.39 9.27 7.90 -40.82 -0.32 8.95 16 31 H 0.05 0.85 5.99 -51.93 -0.31 0.54 16 32 H 0.09 1.33 7.77 -51.93 -0.40 0.92 16 33 H 0.04 0.41 6.87 -51.93 -0.36 0.05 16 34 H 0.08 0.82 7.84 -51.93 -0.41 0.41 16 35 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.07 0.90 7.30 -51.93 -0.38 0.52 16 37 H 0.40 2.33 7.95 -40.82 -0.32 2.01 16 38 H 0.07 0.63 8.03 -51.93 -0.42 0.22 16 39 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 43 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.10 0.50 7.65 -51.93 -0.40 0.10 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.12 1.87 8.03 -51.93 -0.42 1.45 16 47 H 0.10 1.93 4.91 -51.93 -0.26 1.67 16 48 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 49 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 50 H 0.09 1.05 7.15 -51.93 -0.37 0.68 16 LS Contribution 397.26 15.07 5.99 5.99 Total: -1.00 -33.48 397.26 -9.29 -42.76 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -8.10 Total: 11.90 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -1.29 Total: 2.44 kcal Atomic # 7 Polarization: -52.44 SS G_CDS: -0.65 Total: -53.10 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -0.21 Total: -26.02 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.48 -9.29 -42.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663709942.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.946 kcal (2) G-P(sol) polarization free energy of solvation -33.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds