Wall clock time and date at job start Sat Apr 11 2020 05:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86807 * 119.99975 * 2 1 4 4 H 1.48496 * 109.47186 * 239.99877 * 3 2 1 5 5 H 1.48492 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46662 * 119.99648 * 3 2 1 7 7 C 1.38948 * 119.99949 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99851 * 180.02562 * 7 2 1 9 9 N 1.37093 * 120.00270 * 0.02562 * 7 2 1 10 10 C 1.34776 * 120.00456 * 180.02562 * 9 7 2 11 11 O 1.21295 * 119.99605 * 0.02562 * 10 9 7 12 12 C 1.50702 * 120.00218 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.47160 * 181.33036 * 12 10 9 14 14 C 1.46893 * 111.00046 * 162.31120 * 13 12 10 15 15 C 1.53004 * 109.47105 * 189.99844 * 14 13 12 16 16 N 1.46506 * 109.46785 * 180.02562 * 15 14 13 17 17 C 1.34778 * 119.99409 * 180.02562 * 16 15 14 18 18 O 1.21273 * 120.00349 * 359.97438 * 17 16 15 19 19 C 1.50700 * 119.99461 * 180.02562 * 17 16 15 20 20 H 1.08999 * 109.52432 * 299.99409 * 19 17 16 21 21 C 1.53179 * 109.51891 * 179.87353 * 19 17 16 22 22 C 1.53181 * 109.03721 * 183.11359 * 21 19 17 23 23 C 1.53098 * 109.16249 * 56.97678 * 22 21 19 24 24 O 1.42900 * 109.41406 * 302.39341 * 23 22 21 25 25 C 1.42902 * 114.15509 * 61.12472 * 24 23 22 26 26 C 1.46900 * 110.99772 * 286.27053 * 13 12 10 27 27 C 1.53003 * 117.50092 * 3.78224 * 26 13 12 28 28 C 1.53002 * 117.49715 * 295.11913 * 26 13 12 29 29 H 0.97004 * 120.00141 * 0.02562 * 1 2 3 30 30 H 0.97000 * 120.00251 * 0.02562 * 9 7 2 31 31 H 1.08999 * 109.47175 * 61.32978 * 12 10 9 32 32 H 1.09002 * 109.46949 * 301.33008 * 12 10 9 33 33 H 1.09006 * 109.46757 * 70.00377 * 14 13 12 34 34 H 1.09000 * 109.47328 * 310.00379 * 14 13 12 35 35 H 1.08997 * 109.46621 * 60.00502 * 15 14 13 36 36 H 1.09002 * 109.47010 * 300.00195 * 15 14 13 37 37 H 0.96993 * 119.99951 * 359.97438 * 16 15 14 38 38 H 1.09004 * 109.54206 * 302.97516 * 21 19 17 39 39 H 1.08997 * 109.54436 * 63.15608 * 21 19 17 40 40 H 1.08993 * 109.52641 * 176.88405 * 22 21 19 41 41 H 1.09003 * 109.52089 * 297.07539 * 22 21 19 42 42 H 1.08999 * 109.47992 * 62.37719 * 23 22 21 43 43 H 1.09002 * 109.47496 * 182.41150 * 23 22 21 44 44 H 1.09004 * 109.53874 * 178.91946 * 25 24 23 45 45 H 1.09004 * 109.42993 * 58.88734 * 25 24 23 46 46 H 1.09003 * 115.54909 * 149.45785 * 26 13 12 47 47 H 1.08995 * 117.49870 * 0.02562 * 27 26 13 48 48 H 1.08995 * 117.49422 * 145.02190 * 27 26 13 49 49 H 1.08994 * 117.50180 * 214.98049 * 28 26 13 50 50 H 1.09003 * 117.50091 * 359.97438 * 28 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6965 -1.2124 5 1 1.2832 2.7464 0.0006 6 1 3.1018 1.6964 1.2126 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0030 12 6 1.2437 -4.8630 0.0010 13 7 2.1980 -5.9793 0.0345 14 6 1.5381 -7.2235 0.4520 15 6 2.5952 -8.2977 0.7159 16 7 1.9370 -9.5388 1.1317 17 6 2.6750 -10.6291 1.4198 18 8 3.8839 -10.5830 1.3344 19 6 1.9979 -11.9059 1.8469 20 1 1.4258 -11.7278 2.7575 21 6 3.0551 -12.9829 2.1091 22 6 2.3524 -14.2963 2.4666 23 6 1.3995 -14.6814 1.3319 24 8 0.4621 -13.6240 1.1194 25 6 1.0576 -12.3826 0.7369 26 6 2.8599 -6.1452 -1.2664 27 6 2.5351 -5.1253 -2.3596 28 6 1.9878 -6.5517 -2.4560 29 1 -0.4850 0.8401 -0.0004 30 1 0.3534 -2.3907 -0.0002 31 1 0.6361 -4.9313 -0.9013 32 1 0.5983 -4.9102 0.8781 33 1 0.8663 -7.5610 -0.3373 34 1 0.9671 -7.0440 1.3630 35 1 3.2669 -7.9602 1.5051 36 1 3.1661 -8.4772 -0.1952 37 1 0.9702 -9.5755 1.2003 38 1 3.6605 -13.1252 1.2138 39 1 3.6942 -12.6730 2.9359 40 1 3.0955 -15.0822 2.6007 41 1 1.7867 -14.1672 3.3893 42 1 1.9707 -14.8497 0.4189 43 1 0.8650 -15.5928 1.5998 44 1 0.2776 -11.6382 0.5766 45 1 1.6235 -12.5205 -0.1845 46 1 3.8762 -6.5376 -1.2300 47 1 1.8305 -4.3309 -2.1134 48 1 3.3375 -4.8469 -3.0426 49 1 2.4305 -7.2110 -3.2025 50 1 0.9230 -6.6964 -2.2733 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663709942.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:52 Heat of formation + Delta-G solvation = -109.662283 kcal Electronic energy + Delta-G solvation = -29536.161686 eV Core-core repulsion = 25370.329682 eV Total energy + Delta-G solvation = -4165.832005 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.42267 -40.93231 -39.56912 -38.94010 -36.35337 -35.84819 -34.62939 -34.35673 -33.21497 -32.50605 -30.51564 -27.95850 -26.20274 -25.88726 -25.32859 -24.11067 -23.07908 -22.02543 -21.57747 -20.89655 -20.39470 -19.68649 -18.42591 -18.07267 -17.62459 -17.38904 -17.29979 -16.77676 -16.46658 -16.34690 -16.06274 -15.73700 -15.60953 -15.34308 -15.04615 -14.77742 -14.72245 -14.59079 -14.13663 -13.93024 -13.57461 -13.48257 -13.44240 -13.15609 -13.01788 -12.72639 -12.59124 -12.40551 -12.29699 -12.15235 -12.13847 -12.09382 -11.88567 -11.60301 -11.46197 -11.39292 -11.08227 -10.95372 -10.50313 -10.27433 -10.13241 -9.95355 -9.17914 -8.43176 -5.90747 1.40194 1.41637 1.51935 1.54724 1.94968 2.12385 2.31232 2.78053 2.88640 2.93265 3.23355 3.40869 3.56422 3.74160 3.76827 3.79195 3.95715 3.97460 3.98507 4.03760 4.14247 4.16116 4.28089 4.31053 4.40118 4.44355 4.51153 4.56104 4.62839 4.72050 4.72264 4.80618 4.90524 4.91280 4.96198 4.99624 5.05650 5.12108 5.15355 5.17553 5.30040 5.37623 5.43860 5.85279 6.07811 6.13612 6.16305 6.50476 6.65930 7.18254 7.20298 7.62432 8.19935 8.74045 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027472 B = 0.001808 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.966752 B =15484.737580 C =15546.701358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.013 4.013 3 Si 0.989 3.011 4 H -0.274 1.274 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.327 4.327 8 H 0.076 0.924 9 N -0.579 5.579 10 C 0.448 3.552 11 O -0.608 6.608 12 C 0.053 3.947 13 N -0.504 5.504 14 C 0.053 3.947 15 C 0.133 3.867 16 N -0.711 5.711 17 C 0.518 3.482 18 O -0.582 6.582 19 C -0.135 4.135 20 H 0.123 0.877 21 C -0.106 4.106 22 C -0.149 4.149 23 C 0.051 3.949 24 O -0.390 6.390 25 C 0.074 3.926 26 C 0.031 3.969 27 C -0.195 4.195 28 C -0.184 4.184 29 H 0.276 0.724 30 H 0.395 0.605 31 H 0.075 0.925 32 H 0.113 0.887 33 H 0.068 0.932 34 H 0.097 0.903 35 H 0.051 0.949 36 H 0.059 0.941 37 H 0.418 0.582 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.090 0.910 41 H 0.078 0.922 42 H 0.054 0.946 43 H 0.112 0.888 44 H 0.120 0.880 45 H 0.052 0.948 46 H 0.112 0.888 47 H 0.078 0.922 48 H 0.087 0.913 49 H 0.113 0.887 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.120 -28.389 1.090 28.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.213 4.213 3 Si 0.813 3.187 4 H -0.199 1.199 5 H -0.195 1.195 6 H -0.200 1.200 7 C -0.457 4.457 8 H 0.094 0.906 9 N -0.217 5.217 10 C 0.235 3.765 11 O -0.493 6.493 12 C -0.078 4.078 13 N -0.227 5.227 14 C -0.074 4.074 15 C 0.009 3.991 16 N -0.364 5.364 17 C 0.305 3.695 18 O -0.462 6.462 19 C -0.156 4.156 20 H 0.141 0.859 21 C -0.144 4.144 22 C -0.187 4.187 23 C -0.025 4.025 24 O -0.308 6.308 25 C -0.003 4.003 26 C -0.078 4.078 27 C -0.233 4.233 28 C -0.223 4.223 29 H 0.085 0.915 30 H 0.228 0.772 31 H 0.092 0.908 32 H 0.131 0.869 33 H 0.086 0.914 34 H 0.115 0.885 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.255 0.745 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.109 0.891 41 H 0.096 0.904 42 H 0.072 0.928 43 H 0.130 0.870 44 H 0.138 0.862 45 H 0.071 0.929 46 H 0.130 0.870 47 H 0.096 0.904 48 H 0.105 0.895 49 H 0.131 0.869 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.431 -28.099 1.420 28.343 hybrid contribution -0.340 1.317 -0.545 1.465 sum -3.771 -26.782 0.875 27.060 Atomic orbital electron populations 1.69657 1.06659 1.29124 1.50819 1.25949 0.96517 1.02148 0.96662 0.85054 0.77787 0.77103 0.78784 1.19907 1.19529 1.19962 1.19557 0.92535 0.84071 1.49557 0.90591 1.41899 1.09162 1.04601 1.66073 1.20654 0.88347 0.85725 0.81764 1.90515 1.15676 1.87714 1.55393 1.21823 0.93509 0.88732 1.03698 1.61295 1.30479 1.03684 1.27265 1.22278 0.95157 0.87909 1.02041 1.21001 0.95247 0.83057 0.99812 1.45803 1.11340 1.10706 1.68582 1.20905 0.87057 0.85529 0.76041 1.90716 1.16371 1.85173 1.53912 1.22013 0.98846 0.91971 1.02776 0.85877 1.21412 0.96580 0.94140 1.02243 1.22196 0.99556 0.97106 0.99829 1.22824 0.91779 0.90448 0.97481 1.87949 1.33991 1.19568 1.89324 1.22568 0.96627 0.86969 0.94154 1.22581 0.98504 1.03429 0.83291 1.23160 1.03903 0.93581 1.02607 1.23518 1.00510 0.96624 1.01612 0.91457 0.77172 0.90767 0.86932 0.91389 0.88463 0.93060 0.92267 0.74492 0.92330 0.91795 0.89138 0.90367 0.92765 0.86951 0.86238 0.92949 0.87037 0.90351 0.89480 0.86853 0.87586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.53 13.05 21.66 0.28 -49.25 16 2 C -0.01 -0.71 5.50 84.93 0.47 -0.25 16 3 Si 0.99 43.31 29.55 68.60 2.03 45.34 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.33 -18.56 9.68 84.04 0.81 -17.74 16 8 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 9 N -0.58 -29.26 5.29 -306.98 -1.62 -30.89 16 10 C 0.45 20.82 5.84 87.66 0.51 21.33 16 11 O -0.61 -33.38 14.79 -3.08 -0.05 -33.42 16 12 C 0.05 1.74 5.00 85.56 0.43 2.17 16 13 N -0.50 -15.18 4.34 -875.50 -3.80 -18.98 16 14 C 0.05 1.06 4.96 86.31 0.43 1.49 16 15 C 0.13 2.89 5.67 86.38 0.49 3.38 16 16 N -0.71 -11.10 5.46 -463.05 -2.53 -13.63 16 17 C 0.52 10.26 7.16 87.66 0.63 10.89 16 18 O -0.58 -17.43 15.97 -3.01 -0.05 -17.48 16 19 C -0.13 -1.79 2.72 -11.45 -0.03 -1.82 16 20 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 21 C -0.11 -1.55 4.62 30.71 0.14 -1.41 16 22 C -0.15 -1.43 6.14 30.69 0.19 -1.24 16 23 C 0.05 0.49 6.84 72.01 0.49 0.98 16 24 O -0.39 -5.14 10.76 -148.98 -1.60 -6.75 16 25 C 0.07 0.82 6.01 72.01 0.43 1.25 16 26 C 0.03 0.93 4.55 44.92 0.20 1.13 16 27 C -0.20 -6.37 8.48 30.62 0.26 -6.11 16 28 C -0.18 -4.23 9.27 30.62 0.28 -3.95 16 29 H 0.28 13.98 8.31 -92.71 -0.77 13.20 16 30 H 0.39 18.90 7.90 -92.71 -0.73 18.17 16 31 H 0.07 2.15 5.99 -2.39 -0.01 2.14 16 32 H 0.11 3.11 7.77 -2.39 -0.02 3.09 16 33 H 0.07 1.03 6.87 -2.38 -0.02 1.01 16 34 H 0.10 1.63 7.84 -2.39 -0.02 1.61 16 35 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.06 1.45 7.30 -2.39 -0.02 1.43 16 37 H 0.42 3.42 7.95 -92.71 -0.74 2.69 16 38 H 0.06 1.02 8.03 -2.38 -0.02 1.00 16 39 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 43 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.12 0.78 7.65 -2.38 -0.02 0.76 16 45 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 46 H 0.11 3.52 8.03 -2.39 -0.02 3.50 16 47 H 0.08 2.96 4.91 -2.39 -0.01 2.95 16 48 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 49 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 50 H 0.11 2.09 7.15 -2.39 -0.02 2.07 16 Total: -1.00 -75.65 397.26 -2.11 -77.75 By element: Atomic # 1 Polarization: 37.70 SS G_CDS: -0.50 Total: 37.19 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: 5.74 Total: 10.11 kcal Atomic # 7 Polarization: -105.07 SS G_CDS: -7.67 Total: -112.74 kcal Atomic # 8 Polarization: -55.96 SS G_CDS: -1.70 Total: -57.65 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -75.65 -2.11 -77.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663709942.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.908 kcal (2) G-P(sol) polarization free energy of solvation -75.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds