Wall clock time and date at job start Sat Apr 11 2020 05:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31402 * 1 3 3 Si 1.86803 * 120.00059 * 2 1 4 4 H 1.48497 * 109.47173 * 270.00082 * 3 2 1 5 5 H 1.48497 * 109.47217 * 30.00312 * 3 2 1 6 6 H 1.48501 * 109.46966 * 150.00223 * 3 2 1 7 7 C 1.38949 * 119.99897 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99968 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00129 * 359.97438 * 7 2 1 10 10 C 1.34783 * 119.99854 * 180.02562 * 9 7 2 11 11 O 1.21288 * 120.00437 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99722 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.47003 * 184.47707 * 12 10 9 14 14 C 1.46895 * 110.99634 * 283.95570 * 13 12 10 15 15 C 1.53001 * 109.47125 * 170.00190 * 14 13 12 16 16 N 1.46505 * 109.47301 * 179.97438 * 15 14 13 17 17 C 1.34780 * 119.99727 * 180.02562 * 16 15 14 18 18 O 1.21281 * 119.99843 * 359.97438 * 17 16 15 19 19 C 1.50698 * 119.99559 * 179.97438 * 17 16 15 20 20 H 1.08999 * 109.52280 * 59.87438 * 19 17 16 21 21 C 1.53182 * 109.51967 * 179.97438 * 19 17 16 22 22 C 1.53175 * 109.03381 * 176.88647 * 21 19 17 23 23 C 1.53083 * 109.16561 * 303.01936 * 22 21 19 24 24 O 1.42905 * 109.41475 * 57.61006 * 23 22 21 25 25 C 1.42900 * 114.09714 * 298.84211 * 24 23 22 26 26 C 1.46904 * 110.99735 * 160.00337 * 13 12 10 27 27 C 1.52998 * 117.49923 * 11.73707 * 26 13 12 28 28 C 1.52997 * 117.49899 * 303.11436 * 26 13 12 29 29 H 0.97000 * 120.00089 * 359.97438 * 1 2 3 30 30 H 0.97000 * 120.00114 * 0.02562 * 9 7 2 31 31 H 1.08996 * 109.46983 * 64.47395 * 12 10 9 32 32 H 1.09003 * 109.47036 * 304.47697 * 12 10 9 33 33 H 1.09001 * 109.47535 * 50.00208 * 14 13 12 34 34 H 1.09003 * 109.47223 * 289.99665 * 14 13 12 35 35 H 1.09001 * 109.46899 * 59.99629 * 15 14 13 36 36 H 1.08999 * 109.46823 * 300.00298 * 15 14 13 37 37 H 0.96996 * 119.99801 * 359.97438 * 16 15 14 38 38 H 1.08997 * 109.54378 * 296.75388 * 21 19 17 39 39 H 1.09002 * 109.54376 * 56.92895 * 21 19 17 40 40 H 1.09000 * 109.51986 * 62.92909 * 22 21 19 41 41 H 1.09005 * 109.51846 * 183.04939 * 22 21 19 42 42 H 1.08998 * 109.48372 * 177.59236 * 23 22 21 43 43 H 1.09001 * 109.48057 * 297.62680 * 23 22 21 44 44 H 1.08997 * 109.48406 * 301.17503 * 25 24 23 45 45 H 1.09002 * 109.47915 * 181.13980 * 25 24 23 46 46 H 1.09004 * 115.54466 * 157.44707 * 26 13 12 47 47 H 1.09000 * 117.50132 * 359.97438 * 27 26 13 48 48 H 1.09006 * 117.49397 * 145.02078 * 27 26 13 49 49 H 1.09001 * 117.49733 * 214.98122 * 28 26 13 50 50 H 1.08999 * 117.49817 * 0.02562 * 28 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4955 2.0464 -1.4000 5 1 1.4456 2.6527 0.7001 6 1 3.5456 1.4401 0.7000 7 6 2.0087 -1.2033 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0001 12 6 1.2437 -4.8630 -0.0011 13 7 2.1946 -5.9775 0.1071 14 6 2.8769 -6.2133 -1.1722 15 6 4.0259 -7.2017 -0.9628 16 7 4.7060 -7.4374 -2.2388 17 6 5.7567 -8.2796 -2.2969 18 8 6.1394 -8.8418 -1.2927 19 6 6.4559 -8.5225 -3.6095 20 1 6.8502 -7.5810 -3.9919 21 6 7.6067 -9.5118 -3.4011 22 6 8.2599 -9.8105 -4.7540 23 6 7.1983 -10.3486 -5.7168 24 8 6.1426 -9.3936 -5.8418 25 6 5.4640 -9.1103 -4.6165 26 6 1.5250 -7.1968 0.5794 27 6 -0.0048 -7.1981 0.6044 28 6 0.7817 -7.1226 1.9146 29 1 -0.4850 0.8400 0.0004 30 1 0.3533 -2.3907 -0.0005 31 1 0.6789 -4.9560 -0.9287 32 1 0.5579 -4.8869 0.8458 33 1 3.2726 -5.2714 -1.5521 34 1 2.1689 -6.6263 -1.8909 35 1 3.6302 -8.1436 -0.5829 36 1 4.7338 -6.7888 -0.2441 37 1 4.3997 -6.9879 -3.0419 38 1 8.3449 -9.0758 -2.7281 39 1 7.2201 -10.4351 -2.9695 40 1 8.6901 -8.8953 -5.1607 41 1 9.0450 -10.5552 -4.6229 42 1 7.6485 -10.5227 -6.6940 43 1 6.7973 -11.2851 -5.3291 44 1 5.0402 -10.0306 -4.2144 45 1 4.6649 -8.3923 -4.8011 46 1 2.0256 -8.1333 0.3333 47 1 -0.5144 -6.2941 0.2709 48 1 -0.5110 -8.1357 0.3747 49 1 0.7929 -8.0104 2.5468 50 1 0.7892 -6.1689 2.4424 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663709943.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:55 Heat of formation + Delta-G solvation = -88.158621 kcal Electronic energy + Delta-G solvation = -29616.940967 eV Core-core repulsion = 25452.041431 eV Total energy + Delta-G solvation = -4164.899536 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.55392 -39.40831 -38.71776 -37.51320 -35.43075 -34.04109 -33.91448 -33.23037 -31.82511 -31.25527 -29.27334 -26.57450 -25.34138 -24.71673 -24.24026 -22.78186 -22.29494 -21.24307 -20.36761 -20.10159 -18.89306 -17.86881 -17.56647 -16.84428 -16.67883 -16.45764 -16.00790 -15.66170 -15.38067 -15.07948 -14.94618 -14.52780 -14.19889 -14.12168 -13.97620 -13.89601 -13.66533 -13.22269 -13.04766 -12.84489 -12.61527 -12.49299 -12.01649 -11.89248 -11.53551 -11.49980 -11.42711 -11.35750 -11.28345 -11.13306 -10.99131 -10.79625 -10.66913 -10.40816 -10.29113 -10.23299 -10.09637 -9.78291 -9.50967 -9.11223 -8.45746 -7.98608 -7.84811 -6.43334 -3.84115 2.47452 2.91231 3.16419 3.25439 3.31324 3.44516 3.75674 3.88025 4.02065 4.22098 4.25063 4.44472 4.45673 4.54759 4.71739 4.78544 4.87261 4.93699 4.95147 4.98957 5.02750 5.17311 5.18527 5.21407 5.28597 5.31366 5.38754 5.47380 5.54700 5.58689 5.61035 5.67852 5.73084 5.77322 5.92606 5.93792 5.99468 6.10144 6.13511 6.18917 6.24048 6.33955 6.72481 7.11993 7.26082 7.36202 7.53688 8.04254 8.08007 8.59773 9.16584 9.52401 10.04104 10.74377 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011268 B = 0.002333 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2484.319891 B =11998.410082 C =13674.597761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.298 4.298 8 H 0.103 0.897 9 N -0.565 5.565 10 C 0.443 3.557 11 O -0.576 6.576 12 C 0.042 3.958 13 N -0.478 5.478 14 C 0.051 3.949 15 C 0.125 3.875 16 N -0.725 5.725 17 C 0.520 3.480 18 O -0.537 6.537 19 C -0.145 4.145 20 H 0.108 0.892 21 C -0.102 4.102 22 C -0.157 4.157 23 C 0.057 3.943 24 O -0.377 6.377 25 C 0.073 3.927 26 C 0.019 3.981 27 C -0.225 4.225 28 C -0.171 4.171 29 H 0.271 0.729 30 H 0.391 0.609 31 H 0.054 0.946 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.034 0.966 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.400 0.600 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.095 0.905 43 H 0.052 0.948 44 H 0.057 0.943 45 H 0.099 0.901 46 H 0.120 0.880 47 H 0.100 0.900 48 H 0.091 0.909 49 H 0.096 0.904 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.572 -20.258 -9.005 22.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.756 3.244 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.427 4.427 8 H 0.121 0.879 9 N -0.202 5.202 10 C 0.228 3.772 11 O -0.460 6.460 12 C -0.089 4.089 13 N -0.199 5.199 14 C -0.077 4.077 15 C 0.002 3.998 16 N -0.377 5.377 17 C 0.305 3.695 18 O -0.413 6.413 19 C -0.166 4.166 20 H 0.126 0.874 21 C -0.140 4.140 22 C -0.195 4.195 23 C -0.020 4.020 24 O -0.295 6.295 25 C -0.005 4.005 26 C -0.090 4.090 27 C -0.264 4.264 28 C -0.209 4.209 29 H 0.081 0.919 30 H 0.224 0.776 31 H 0.072 0.928 32 H 0.111 0.889 33 H 0.117 0.883 34 H 0.052 0.948 35 H 0.082 0.918 36 H 0.100 0.900 37 H 0.234 0.766 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.114 0.886 43 H 0.070 0.930 44 H 0.075 0.925 45 H 0.117 0.883 46 H 0.138 0.862 47 H 0.118 0.882 48 H 0.110 0.890 49 H 0.114 0.886 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 6.860 -20.256 -8.090 22.865 hybrid contribution -1.034 0.880 -0.555 1.466 sum 5.827 -19.376 -8.645 22.003 Atomic orbital electron populations 1.69605 1.05927 1.28153 1.50645 1.25252 0.95630 0.99701 0.97358 0.85869 0.79281 0.80855 0.78365 1.20435 1.20924 1.19407 1.19684 0.93335 0.82169 1.47562 0.87932 1.41858 1.09150 1.04567 1.64577 1.19742 0.88441 0.84467 0.84569 1.90518 1.13593 1.86924 1.54916 1.21993 0.94223 0.91022 1.01660 1.61218 1.28010 1.02610 1.28084 1.22238 0.94769 1.00605 0.90108 1.21332 0.94786 0.98530 0.85189 1.45980 1.32768 1.46637 1.12347 1.20352 0.79907 0.78806 0.90435 1.90712 1.64595 1.49275 1.36750 1.22036 0.98050 1.02444 0.94112 0.87399 1.21404 0.96573 0.99132 0.96917 1.22232 0.98806 1.02572 0.95845 1.22650 0.87836 0.91188 1.00333 1.87973 1.48725 1.62373 1.30423 1.22505 0.93348 1.00271 0.84364 1.22796 0.90817 0.94223 1.01192 1.23621 0.96051 1.03512 1.03206 1.23074 1.03391 1.03612 0.90850 0.91879 0.77553 0.92776 0.88930 0.88305 0.94790 0.91789 0.90013 0.76560 0.90530 0.90904 0.90787 0.90376 0.88639 0.92990 0.92485 0.88275 0.86220 0.88151 0.89035 0.88559 0.88242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.24 13.05 55.50 0.72 -23.52 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 20.90 29.55 -169.99 -5.02 15.87 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.30 -8.18 9.68 -14.93 -0.14 -8.32 16 8 H 0.10 2.96 7.16 -52.48 -0.38 2.59 16 9 N -0.56 -13.99 5.29 -10.96 -0.06 -14.05 16 10 C 0.44 10.14 7.52 -10.98 -0.08 10.06 16 11 O -0.58 -15.13 14.62 5.55 0.08 -15.05 16 12 C 0.04 0.72 4.12 -4.97 -0.02 0.70 16 13 N -0.48 -7.56 4.31 -228.08 -0.98 -8.54 16 14 C 0.05 0.72 4.68 -3.83 -0.02 0.70 16 15 C 0.13 1.68 5.67 -4.04 -0.02 1.65 16 16 N -0.73 -8.07 5.46 -60.29 -0.33 -8.40 16 17 C 0.52 6.26 7.15 -10.98 -0.08 6.18 16 18 O -0.54 -8.54 15.97 5.56 0.09 -8.46 16 19 C -0.14 -1.31 2.73 -91.63 -0.25 -1.56 16 20 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 21 C -0.10 -0.90 4.62 -26.55 -0.12 -1.02 16 22 C -0.16 -1.05 6.14 -26.60 -0.16 -1.21 16 23 C 0.06 0.38 6.84 37.20 0.25 0.64 16 24 O -0.38 -3.39 10.77 -35.23 -0.38 -3.77 16 25 C 0.07 0.58 6.01 37.20 0.22 0.80 16 26 C 0.02 0.25 5.83 -67.71 -0.39 -0.15 16 27 C -0.22 -2.53 9.56 -26.73 -0.26 -2.78 16 28 C -0.17 -2.06 9.90 -26.73 -0.26 -2.33 16 29 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 30 H 0.39 9.28 7.90 -40.82 -0.32 8.96 16 31 H 0.05 0.84 7.82 -51.93 -0.41 0.43 16 32 H 0.09 1.48 5.52 -51.93 -0.29 1.19 16 33 H 0.10 1.68 6.60 -51.93 -0.34 1.34 16 34 H 0.03 0.41 8.12 -51.93 -0.42 -0.01 16 35 H 0.06 0.83 6.40 -51.93 -0.33 0.49 16 36 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.40 3.47 7.96 -40.82 -0.32 3.15 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.69 8.02 -51.93 -0.42 0.27 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.10 0.65 7.66 -51.93 -0.40 0.26 16 46 H 0.12 1.38 6.34 -51.93 -0.33 1.05 16 47 H 0.10 1.18 6.06 -51.93 -0.31 0.87 16 48 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 49 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 50 H 0.10 1.34 7.41 -51.93 -0.38 0.95 16 LS Contribution 398.98 15.07 6.01 6.01 Total: -1.00 -33.09 398.98 -9.32 -42.41 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: -8.02 Total: 13.63 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: -1.44 Total: 3.85 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: -0.65 Total: -54.51 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.21 Total: -27.27 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.09 -9.32 -42.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663709943.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.745 kcal (2) G-P(sol) polarization free energy of solvation -33.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds