Wall clock time and date at job start Sat Apr 11 2020 05:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31402 * 1 3 3 Si 1.86803 * 120.00059 * 2 1 4 4 H 1.48497 * 109.47173 * 270.00082 * 3 2 1 5 5 H 1.48497 * 109.47217 * 30.00312 * 3 2 1 6 6 H 1.48501 * 109.46966 * 150.00223 * 3 2 1 7 7 C 1.38949 * 119.99897 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99968 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00129 * 359.97438 * 7 2 1 10 10 C 1.34783 * 119.99854 * 180.02562 * 9 7 2 11 11 O 1.21288 * 120.00437 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99722 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.47003 * 184.47707 * 12 10 9 14 14 C 1.46895 * 110.99634 * 283.95570 * 13 12 10 15 15 C 1.53001 * 109.47125 * 170.00190 * 14 13 12 16 16 N 1.46505 * 109.47301 * 179.97438 * 15 14 13 17 17 C 1.34780 * 119.99727 * 180.02562 * 16 15 14 18 18 O 1.21281 * 119.99843 * 359.97438 * 17 16 15 19 19 C 1.50698 * 119.99559 * 179.97438 * 17 16 15 20 20 H 1.08999 * 109.52280 * 59.87438 * 19 17 16 21 21 C 1.53182 * 109.51967 * 179.97438 * 19 17 16 22 22 C 1.53175 * 109.03381 * 176.88647 * 21 19 17 23 23 C 1.53083 * 109.16561 * 303.01936 * 22 21 19 24 24 O 1.42905 * 109.41475 * 57.61006 * 23 22 21 25 25 C 1.42900 * 114.09714 * 298.84211 * 24 23 22 26 26 C 1.46904 * 110.99735 * 160.00337 * 13 12 10 27 27 C 1.52998 * 117.49923 * 11.73707 * 26 13 12 28 28 C 1.52997 * 117.49899 * 303.11436 * 26 13 12 29 29 H 0.97000 * 120.00089 * 359.97438 * 1 2 3 30 30 H 0.97000 * 120.00114 * 0.02562 * 9 7 2 31 31 H 1.08996 * 109.46983 * 64.47395 * 12 10 9 32 32 H 1.09003 * 109.47036 * 304.47697 * 12 10 9 33 33 H 1.09001 * 109.47535 * 50.00208 * 14 13 12 34 34 H 1.09003 * 109.47223 * 289.99665 * 14 13 12 35 35 H 1.09001 * 109.46899 * 59.99629 * 15 14 13 36 36 H 1.08999 * 109.46823 * 300.00298 * 15 14 13 37 37 H 0.96996 * 119.99801 * 359.97438 * 16 15 14 38 38 H 1.08997 * 109.54378 * 296.75388 * 21 19 17 39 39 H 1.09002 * 109.54376 * 56.92895 * 21 19 17 40 40 H 1.09000 * 109.51986 * 62.92909 * 22 21 19 41 41 H 1.09005 * 109.51846 * 183.04939 * 22 21 19 42 42 H 1.08998 * 109.48372 * 177.59236 * 23 22 21 43 43 H 1.09001 * 109.48057 * 297.62680 * 23 22 21 44 44 H 1.08997 * 109.48406 * 301.17503 * 25 24 23 45 45 H 1.09002 * 109.47915 * 181.13980 * 25 24 23 46 46 H 1.09004 * 115.54466 * 157.44707 * 26 13 12 47 47 H 1.09000 * 117.50132 * 359.97438 * 27 26 13 48 48 H 1.09006 * 117.49397 * 145.02078 * 27 26 13 49 49 H 1.09001 * 117.49733 * 214.98122 * 28 26 13 50 50 H 1.08999 * 117.49817 * 0.02562 * 28 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4955 2.0464 -1.4000 5 1 1.4456 2.6527 0.7001 6 1 3.5456 1.4401 0.7000 7 6 2.0087 -1.2033 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0001 12 6 1.2437 -4.8630 -0.0011 13 7 2.1946 -5.9775 0.1071 14 6 2.8769 -6.2133 -1.1722 15 6 4.0259 -7.2017 -0.9628 16 7 4.7060 -7.4374 -2.2388 17 6 5.7567 -8.2796 -2.2969 18 8 6.1394 -8.8418 -1.2927 19 6 6.4559 -8.5225 -3.6095 20 1 6.8502 -7.5810 -3.9919 21 6 7.6067 -9.5118 -3.4011 22 6 8.2599 -9.8105 -4.7540 23 6 7.1983 -10.3486 -5.7168 24 8 6.1426 -9.3936 -5.8418 25 6 5.4640 -9.1103 -4.6165 26 6 1.5250 -7.1968 0.5794 27 6 -0.0048 -7.1981 0.6044 28 6 0.7817 -7.1226 1.9146 29 1 -0.4850 0.8400 0.0004 30 1 0.3533 -2.3907 -0.0005 31 1 0.6789 -4.9560 -0.9287 32 1 0.5579 -4.8869 0.8458 33 1 3.2726 -5.2714 -1.5521 34 1 2.1689 -6.6263 -1.8909 35 1 3.6302 -8.1436 -0.5829 36 1 4.7338 -6.7888 -0.2441 37 1 4.3997 -6.9879 -3.0419 38 1 8.3449 -9.0758 -2.7281 39 1 7.2201 -10.4351 -2.9695 40 1 8.6901 -8.8953 -5.1607 41 1 9.0450 -10.5552 -4.6229 42 1 7.6485 -10.5227 -6.6940 43 1 6.7973 -11.2851 -5.3291 44 1 5.0402 -10.0306 -4.2144 45 1 4.6649 -8.3923 -4.8011 46 1 2.0256 -8.1333 0.3333 47 1 -0.5144 -6.2941 0.2709 48 1 -0.5110 -8.1357 0.3747 49 1 0.7929 -8.0104 2.5468 50 1 0.7892 -6.1689 2.4424 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663709943.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:54 Heat of formation + Delta-G solvation = -113.289782 kcal Electronic energy + Delta-G solvation = -29618.030736 eV Core-core repulsion = 25452.041431 eV Total energy + Delta-G solvation = -4165.989305 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.43723 -40.72660 -39.58758 -39.07851 -36.49192 -35.94660 -34.65440 -34.38757 -33.27520 -32.51919 -30.51241 -27.99877 -26.25005 -25.91687 -25.32325 -23.81720 -23.21982 -22.08248 -21.72187 -20.98046 -20.43954 -19.73293 -18.54547 -18.16321 -17.50355 -17.36608 -16.86994 -16.80280 -16.61888 -16.31923 -16.13026 -15.81814 -15.65767 -15.57177 -15.03080 -14.84517 -14.66876 -14.40182 -14.22392 -13.92375 -13.64629 -13.50571 -13.46875 -13.29528 -12.97609 -12.62712 -12.54127 -12.42349 -12.35163 -12.23847 -12.15869 -12.12807 -11.90528 -11.72740 -11.47619 -11.41333 -11.22914 -10.99377 -10.52498 -10.27925 -10.15952 -9.99526 -9.06134 -8.45954 -5.94206 1.37416 1.41443 1.50192 1.53706 1.92566 2.06845 2.28631 2.67607 2.88480 2.98864 3.20678 3.44163 3.53951 3.68513 3.74325 3.77066 3.94304 3.97090 4.02256 4.09140 4.13282 4.17142 4.23982 4.29141 4.35720 4.42850 4.47409 4.51878 4.60447 4.68935 4.78463 4.81004 4.84979 4.89239 4.95015 4.98071 5.03211 5.09987 5.10628 5.27228 5.27857 5.34127 5.41551 5.83927 6.05553 6.14498 6.16530 6.44229 6.61433 7.13267 7.14108 7.57503 8.13527 8.71342 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011268 B = 0.002333 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2484.319891 B =11998.410082 C =13674.597761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.990 3.010 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.275 1.275 7 C -0.330 4.330 8 H 0.077 0.923 9 N -0.575 5.575 10 C 0.441 3.559 11 O -0.614 6.614 12 C 0.059 3.941 13 N -0.504 5.504 14 C 0.060 3.940 15 C 0.138 3.862 16 N -0.716 5.716 17 C 0.519 3.481 18 O -0.579 6.579 19 C -0.137 4.137 20 H 0.116 0.884 21 C -0.104 4.104 22 C -0.150 4.150 23 C 0.051 3.949 24 O -0.391 6.391 25 C 0.075 3.925 26 C 0.008 3.992 27 C -0.206 4.206 28 C -0.177 4.177 29 H 0.277 0.723 30 H 0.396 0.604 31 H 0.078 0.922 32 H 0.106 0.894 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.044 0.956 37 H 0.414 0.586 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.093 0.907 42 H 0.113 0.887 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.114 0.886 46 H 0.135 0.865 47 H 0.096 0.904 48 H 0.116 0.884 49 H 0.116 0.884 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.657 -21.361 -10.306 24.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.814 3.186 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.200 1.200 7 C -0.459 4.459 8 H 0.095 0.905 9 N -0.212 5.212 10 C 0.228 3.772 11 O -0.500 6.500 12 C -0.072 4.072 13 N -0.226 5.226 14 C -0.068 4.068 15 C 0.014 3.986 16 N -0.368 5.368 17 C 0.306 3.694 18 O -0.459 6.459 19 C -0.159 4.159 20 H 0.134 0.866 21 C -0.142 4.142 22 C -0.187 4.187 23 C -0.025 4.025 24 O -0.309 6.309 25 C -0.002 4.002 26 C -0.101 4.101 27 C -0.245 4.245 28 C -0.215 4.215 29 H 0.087 0.913 30 H 0.229 0.771 31 H 0.095 0.905 32 H 0.124 0.876 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.063 0.937 37 H 0.251 0.749 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.112 0.888 42 H 0.131 0.869 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.132 0.868 46 H 0.152 0.848 47 H 0.114 0.886 48 H 0.134 0.866 49 H 0.134 0.866 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.911 -21.364 -9.420 24.086 hybrid contribution -0.718 1.163 -0.119 1.372 sum 5.193 -20.202 -9.539 22.936 Atomic orbital electron populations 1.69662 1.06740 1.29213 1.50487 1.25991 0.96527 1.02274 0.96442 0.84969 0.77850 0.77118 0.78664 1.19529 1.19618 1.20014 1.19614 0.92593 0.83981 1.49747 0.90452 1.41920 1.09263 1.04655 1.65399 1.20799 0.88321 0.85878 0.82188 1.90493 1.15660 1.87815 1.55985 1.21794 0.93752 0.88336 1.03346 1.61100 1.28627 1.03708 1.29183 1.22099 0.95321 0.99217 0.90196 1.21055 0.93738 0.98409 0.85445 1.45894 1.32434 1.46328 1.12157 1.20896 0.79533 0.77951 0.91001 1.90692 1.65759 1.50958 1.38456 1.22031 0.98192 1.03055 0.92587 0.86573 1.21405 0.96271 0.98503 0.97988 1.22201 0.99064 1.03124 0.94359 1.22836 0.87395 0.90977 1.01305 1.87961 1.49343 1.62950 1.30662 1.22537 0.93161 1.00680 0.83807 1.22874 0.92071 0.93191 1.01931 1.23654 0.94602 1.04513 1.01714 1.23139 1.03660 1.03570 0.91155 0.91348 0.77076 0.90453 0.87575 0.91529 0.91835 0.90834 0.93718 0.74933 0.91921 0.91803 0.90714 0.88819 0.86915 0.92387 0.92354 0.86789 0.84772 0.88560 0.86620 0.86607 0.90157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.24 13.05 21.66 0.28 -48.96 16 2 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 3 Si 0.99 42.88 29.55 68.60 2.03 44.90 16 4 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 6 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.33 -18.59 9.68 84.04 0.81 -17.78 16 8 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 9 N -0.57 -29.10 5.29 -306.98 -1.62 -30.72 16 10 C 0.44 20.62 7.52 87.66 0.66 21.28 16 11 O -0.61 -33.48 14.62 -3.05 -0.04 -33.52 16 12 C 0.06 1.96 4.12 85.56 0.35 2.31 16 13 N -0.50 -15.63 4.31 -875.52 -3.78 -19.41 16 14 C 0.06 1.66 4.68 86.30 0.40 2.06 16 15 C 0.14 3.70 5.67 86.38 0.49 4.19 16 16 N -0.72 -15.62 5.46 -463.05 -2.53 -18.15 16 17 C 0.52 12.48 7.15 87.66 0.63 13.11 16 18 O -0.58 -18.87 15.97 -3.03 -0.05 -18.91 16 19 C -0.14 -2.38 2.73 -11.45 -0.03 -2.41 16 20 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 21 C -0.10 -1.79 4.62 30.71 0.14 -1.64 16 22 C -0.15 -1.79 6.14 30.68 0.19 -1.60 16 23 C 0.05 0.59 6.84 72.01 0.49 1.09 16 24 O -0.39 -6.28 10.77 -148.98 -1.60 -7.88 16 25 C 0.08 1.08 6.01 72.01 0.43 1.52 16 26 C 0.01 0.19 5.83 44.91 0.26 0.45 16 27 C -0.21 -4.01 9.56 30.59 0.29 -3.71 16 28 C -0.18 -3.94 9.90 30.59 0.30 -3.63 16 29 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 30 H 0.40 19.00 7.90 -92.71 -0.73 18.26 16 31 H 0.08 2.25 7.82 -2.39 -0.02 2.23 16 32 H 0.11 3.28 5.52 -2.39 -0.01 3.26 16 33 H 0.07 2.30 6.60 -2.39 -0.02 2.29 16 34 H 0.06 1.39 8.12 -2.39 -0.02 1.37 16 35 H 0.07 1.84 6.40 -2.39 -0.02 1.83 16 36 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.41 6.74 7.96 -92.71 -0.74 6.00 16 38 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.06 1.21 8.02 -2.39 -0.02 1.19 16 40 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 42 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.11 1.25 7.66 -2.39 -0.02 1.24 16 46 H 0.13 2.76 6.34 -2.38 -0.02 2.75 16 47 H 0.10 1.98 6.06 -2.39 -0.01 1.97 16 48 H 0.12 1.74 8.14 -2.38 -0.02 1.72 16 49 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 50 H 0.08 2.10 7.41 -2.39 -0.02 2.09 16 Total: -1.00 -73.50 398.98 -1.92 -75.42 By element: Atomic # 1 Polarization: 42.72 SS G_CDS: -0.50 Total: 42.21 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: 5.89 Total: 15.03 kcal Atomic # 7 Polarization: -109.60 SS G_CDS: -7.65 Total: -117.24 kcal Atomic # 8 Polarization: -58.63 SS G_CDS: -1.70 Total: -60.32 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.90 kcal Total: -73.50 -1.92 -75.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663709943.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.867 kcal (2) G-P(sol) polarization free energy of solvation -73.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds