Wall clock time and date at job start Sat Apr 11 2020 05:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86797 * 120.00199 * 2 1 4 4 H 1.48505 * 109.47109 * 274.98439 * 3 2 1 5 5 H 1.48503 * 109.46980 * 34.97940 * 3 2 1 6 6 H 1.48496 * 109.47373 * 154.98178 * 3 2 1 7 7 C 1.38817 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00064 * 186.83332 * 7 2 1 9 9 N 1.36939 * 119.99954 * 6.83731 * 7 2 1 10 10 C 1.47421 * 125.64858 * 173.89711 * 9 7 2 11 11 C 1.54903 * 104.83315 * 155.85141 * 10 9 7 12 12 C 1.55156 * 101.58351 * 37.00756 * 11 10 9 13 13 O 1.42904 * 110.86819 * 82.93293 * 12 11 10 14 14 C 1.52995 * 110.72286 * 206.13369 * 12 11 10 15 15 N 1.46506 * 109.47004 * 174.97843 * 14 12 11 16 16 C 1.34779 * 119.99714 * 180.02562 * 15 14 12 17 17 O 1.21273 * 120.00087 * 359.97438 * 16 15 14 18 18 C 1.50698 * 119.99654 * 180.02562 * 16 15 14 19 19 C 1.52998 * 109.46988 * 179.97438 * 18 16 15 20 20 C 1.53000 * 109.47109 * 179.97438 * 19 18 16 21 21 N 1.46502 * 109.47259 * 179.97438 * 20 19 18 22 22 C 1.34770 * 120.00106 * 179.97438 * 21 20 19 23 23 O 1.21281 * 120.00065 * 0.02562 * 22 21 20 24 24 C 1.50703 * 120.00076 * 179.97438 * 22 21 20 25 25 C 1.52994 * 117.50323 * 248.74783 * 24 22 21 26 26 C 1.53004 * 117.49823 * 180.08626 * 24 22 21 27 27 C 1.47020 * 125.64921 * 353.87699 * 9 7 2 28 28 H 0.97001 * 120.00020 * 0.02562 * 1 2 3 29 29 H 1.09002 * 110.36874 * 274.69210 * 10 9 7 30 30 H 1.09003 * 110.36453 * 37.01470 * 10 9 7 31 31 H 1.09001 * 111.00516 * 155.08843 * 11 10 9 32 32 H 1.09003 * 111.00465 * 278.93407 * 11 10 9 33 33 H 0.96699 * 113.99785 * 184.93705 * 13 12 11 34 34 H 1.09004 * 109.47460 * 294.98022 * 14 12 11 35 35 H 1.08995 * 109.46875 * 54.97773 * 14 12 11 36 36 H 0.97002 * 119.99820 * 0.02562 * 15 14 12 37 37 H 1.09006 * 109.46558 * 299.99139 * 18 16 15 38 38 H 1.08995 * 109.47676 * 59.99438 * 18 16 15 39 39 H 1.09006 * 109.46841 * 299.99054 * 19 18 16 40 40 H 1.08995 * 109.47299 * 59.99296 * 19 18 16 41 41 H 1.09006 * 109.46591 * 299.99323 * 20 19 18 42 42 H 1.08995 * 109.47520 * 59.99547 * 20 19 18 43 43 H 0.97004 * 119.99375 * 359.97438 * 21 20 19 44 44 H 1.08999 * 115.54807 * 34.42463 * 24 22 21 45 45 H 1.09003 * 117.49843 * 0.02562 * 25 24 22 46 46 H 1.09000 * 117.50047 * 145.01970 * 25 24 22 47 47 H 1.08997 * 117.49518 * 214.98161 * 26 24 22 48 48 H 1.08995 * 117.49783 * 359.97438 * 26 24 22 49 49 H 1.09006 * 109.87818 * 300.49317 * 27 9 7 50 50 H 1.08994 * 109.88526 * 61.50338 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5042 2.6200 0.8027 6 1 3.5964 1.4120 0.5921 7 6 2.0102 -1.2022 0.0005 8 1 3.0844 -1.2055 0.1118 9 7 1.3328 -2.3840 -0.1401 10 6 1.9488 -3.7156 -0.2837 11 6 0.8667 -4.7083 0.2091 12 6 -0.4313 -4.0413 -0.3179 13 8 -0.6586 -4.3815 -1.6871 14 6 -1.6321 -4.4383 0.5430 15 7 -2.8175 -3.7021 0.0968 16 6 -4.0005 -3.8917 0.7142 17 8 -4.0837 -4.6721 1.6388 18 6 -5.2200 -3.1349 0.2549 19 6 -6.4208 -3.5318 1.1159 20 6 -7.6588 -2.7630 0.6499 21 7 -8.8088 -3.1435 1.4740 22 6 -10.0154 -2.5889 1.2442 23 8 -10.1494 -1.7751 0.3550 24 6 -11.1985 -2.9807 2.0915 25 6 -12.3119 -3.7874 1.4205 26 6 -12.5415 -2.3172 1.7797 27 6 -0.1293 -2.5349 -0.1726 28 1 -0.4850 0.8401 -0.0004 29 1 2.1943 -3.9095 -1.3278 30 1 2.8420 -3.7892 0.3369 31 1 1.0083 -5.6933 -0.2358 32 1 0.8599 -4.7704 1.2974 33 1 -1.4156 -3.9295 -2.0842 34 1 -1.8112 -5.5091 0.4452 35 1 -1.4265 -4.1981 1.5861 36 1 -2.7510 -3.0782 -0.6430 37 1 -5.0409 -2.0641 0.3520 38 1 -5.4257 -3.3758 -0.7881 39 1 -6.5997 -4.6027 1.0183 40 1 -6.2154 -3.2913 2.1589 41 1 -7.4796 -1.6922 0.7478 42 1 -7.8644 -3.0031 -0.3932 43 1 -8.7017 -3.7947 2.1849 44 1 -10.9765 -3.2011 3.1356 45 1 -12.1885 -4.0352 0.3661 46 1 -12.8226 -4.5384 2.0232 47 1 -13.2031 -2.1017 2.6186 48 1 -12.5692 -1.5971 0.9620 49 1 -0.5615 -2.1580 0.7544 50 1 -0.5396 -1.9885 -1.0217 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716920368.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:53 Heat of formation + Delta-G solvation = -82.605182 kcal Electronic energy + Delta-G solvation = -28995.687031 eV Core-core repulsion = 24831.028310 eV Total energy + Delta-G solvation = -4164.658721 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.25722 -39.81730 -38.45362 -36.82775 -35.66493 -35.09550 -34.00897 -32.90814 -32.25210 -29.70821 -28.34353 -27.41226 -25.75870 -24.42841 -23.41835 -22.84581 -21.98361 -20.79843 -20.30411 -19.93021 -19.76946 -17.78364 -17.64079 -16.84227 -16.44829 -16.27085 -16.08337 -15.63261 -15.43127 -15.05252 -14.74907 -14.38642 -14.28781 -13.99922 -13.88831 -13.54459 -13.22083 -12.91456 -12.90046 -12.54628 -12.38101 -12.27581 -11.99958 -11.95930 -11.72609 -11.63382 -11.23784 -11.14018 -11.04861 -10.92950 -10.87750 -10.68904 -10.50282 -10.31143 -10.17577 -10.07297 -9.84295 -9.69606 -9.37729 -9.33140 -8.91008 -8.68666 -6.90519 -5.81639 -3.12366 2.18305 2.73238 2.75835 3.31932 3.36182 3.41935 3.43336 3.45374 4.27945 4.37936 4.42649 4.45717 4.52706 4.55623 4.72050 4.75807 4.78085 4.94195 5.15892 5.17015 5.26411 5.30001 5.32261 5.43146 5.43927 5.46294 5.48322 5.51698 5.59642 5.70841 5.85221 5.88580 5.94379 5.96622 6.12726 6.14173 6.26670 6.40327 6.53723 6.61465 6.87221 7.17799 7.25246 7.38980 7.58764 7.67704 7.92148 8.03838 8.15448 8.31258 9.13123 9.74025 10.40109 11.31377 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014319 B = 0.001906 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.907900 B =14690.398313 C =16204.862036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.009 4.009 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.226 4.226 8 H 0.080 0.920 9 N -0.604 5.604 10 C 0.136 3.864 11 C -0.115 4.115 12 C 0.085 3.915 13 O -0.551 6.551 14 C 0.110 3.890 15 N -0.721 5.721 16 C 0.515 3.485 17 O -0.550 6.550 18 C -0.139 4.139 19 C -0.114 4.114 20 C 0.117 3.883 21 N -0.725 5.725 22 C 0.541 3.459 23 O -0.541 6.541 24 C -0.197 4.197 25 C -0.153 4.153 26 C -0.148 4.148 27 C 0.163 3.837 28 H 0.252 0.748 29 H 0.026 0.974 30 H 0.041 0.959 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.368 0.632 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.403 0.597 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.403 0.597 44 H 0.124 0.876 45 H 0.099 0.901 46 H 0.104 0.896 47 H 0.103 0.897 48 H 0.108 0.892 49 H 0.052 0.948 50 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.896 -9.780 2.594 22.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.205 4.205 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.354 4.354 8 H 0.097 0.903 9 N -0.330 5.330 10 C 0.010 3.990 11 C -0.154 4.154 12 C 0.044 3.956 13 O -0.356 6.356 14 C -0.014 4.014 15 N -0.373 5.373 16 C 0.302 3.698 17 O -0.428 6.428 18 C -0.180 4.180 19 C -0.152 4.152 20 C -0.007 4.007 21 N -0.377 5.377 22 C 0.327 3.673 23 O -0.418 6.418 24 C -0.218 4.218 25 C -0.190 4.190 26 C -0.185 4.185 27 C 0.038 3.962 28 H 0.062 0.938 29 H 0.043 0.957 30 H 0.059 0.941 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.214 0.786 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.238 0.762 37 H 0.119 0.881 38 H 0.115 0.885 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.237 0.763 44 H 0.142 0.858 45 H 0.118 0.882 46 H 0.123 0.877 47 H 0.121 0.879 48 H 0.126 0.874 49 H 0.070 0.930 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -19.517 -9.896 2.734 22.053 hybrid contribution 0.199 1.309 -0.025 1.324 sum -19.318 -8.587 2.709 21.314 Atomic orbital electron populations 1.69910 1.04933 1.25079 1.57258 1.24801 0.95786 0.97711 1.02178 0.86085 0.78707 0.83412 0.77506 1.21610 1.21785 1.20619 1.19106 0.91217 0.82458 1.42664 0.90252 1.44372 1.01107 1.01479 1.86079 1.21563 0.94352 0.85496 0.97616 1.22704 0.93713 0.98707 1.00229 1.22918 0.93089 0.98702 0.80941 1.86512 1.53413 1.70589 1.25072 1.21940 0.84123 0.96040 0.99339 1.45948 1.08875 1.45367 1.37079 1.20522 0.84474 0.82412 0.82439 1.90679 1.85652 1.37304 1.29136 1.21550 0.92729 1.02106 1.01600 1.21496 0.92073 1.00976 1.00702 1.21423 0.84355 0.99885 0.95001 1.45919 1.08810 1.45517 1.37418 1.19675 0.83382 0.80548 0.83684 1.90711 1.84696 1.33570 1.32854 1.22213 0.89777 1.09211 1.00592 1.22955 0.99295 0.95095 1.01702 1.22970 0.95474 0.96007 1.04097 1.21783 0.85841 0.87193 1.01405 0.93778 0.95670 0.94066 0.90926 0.90241 0.78552 0.91363 0.90602 0.76228 0.88084 0.88522 0.90480 0.90336 0.91069 0.91262 0.76255 0.85781 0.88224 0.87722 0.87866 0.87352 0.93009 0.93264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.84 10.36 55.49 0.57 -25.26 16 2 C -0.01 -0.24 5.48 -17.43 -0.10 -0.34 16 3 Si 0.91 21.73 29.56 -169.99 -5.02 16.71 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.23 -6.19 10.26 -15.06 -0.15 -6.34 16 8 H 0.08 2.11 7.84 -52.49 -0.41 1.70 16 9 N -0.60 -15.02 3.39 -170.08 -0.58 -15.60 16 10 C 0.14 2.80 7.23 -2.53 -0.02 2.78 16 11 C -0.11 -1.98 6.26 -24.59 -0.15 -2.13 16 12 C 0.09 1.48 0.92 -88.79 -0.08 1.40 16 13 O -0.55 -9.20 13.10 -35.23 -0.46 -9.66 16 14 C 0.11 1.71 4.73 -4.04 -0.02 1.69 16 15 N -0.72 -9.86 5.17 -60.29 -0.31 -10.18 16 16 C 0.52 6.98 7.83 -10.98 -0.09 6.89 16 17 O -0.55 -9.27 15.98 5.56 0.09 -9.18 16 18 C -0.14 -1.32 5.70 -27.88 -0.16 -1.48 16 19 C -0.11 -1.01 4.62 -26.73 -0.12 -1.13 16 20 C 0.12 1.03 5.67 -4.04 -0.02 1.00 16 21 N -0.73 -5.96 5.56 -60.29 -0.33 -6.29 16 22 C 0.54 5.46 7.61 -10.99 -0.08 5.37 16 23 O -0.54 -7.65 16.26 5.56 0.09 -7.56 16 24 C -0.20 -1.37 6.19 -91.77 -0.57 -1.93 16 25 C -0.15 -0.89 10.24 -26.70 -0.27 -1.16 16 26 C -0.15 -0.98 10.05 -26.69 -0.27 -1.25 16 27 C 0.16 3.64 4.16 -3.07 -0.01 3.63 16 28 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 29 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.08 1.29 8.04 -51.93 -0.42 0.88 16 33 H 0.37 4.90 8.12 45.56 0.37 5.27 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.08 1.29 8.13 -51.93 -0.42 0.87 16 36 H 0.40 4.98 7.38 -40.82 -0.30 4.67 16 37 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 40 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.40 2.34 8.47 -40.82 -0.35 1.99 16 44 H 0.12 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.11 0.90 7.67 -51.93 -0.40 0.50 16 49 H 0.05 1.29 7.23 -51.93 -0.38 0.91 16 50 H 0.05 1.20 7.28 -51.93 -0.38 0.82 16 LS Contribution 410.01 15.07 6.18 6.18 Total: -1.00 -35.18 410.01 -9.63 -44.80 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -7.73 Total: 9.05 kcal Atomic # 6 Polarization: 9.11 SS G_CDS: -2.12 Total: 6.99 kcal Atomic # 7 Polarization: -56.68 SS G_CDS: -0.65 Total: -57.33 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -0.28 Total: -26.40 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.18 -9.63 -44.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716920368.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.803 kcal (2) G-P(sol) polarization free energy of solvation -35.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds