Wall clock time and date at job start Sat Apr 11 2020 05:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86801 * 120.00272 * 2 1 4 4 H 1.48495 * 109.46999 * 240.00612 * 3 2 1 5 5 H 1.48495 * 109.47150 * 120.00035 * 3 2 1 6 6 H 1.48504 * 109.46766 * 0.02562 * 3 2 1 7 7 C 1.38953 * 119.99726 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99654 * 179.97438 * 7 2 1 9 9 N 1.37089 * 120.00316 * 359.97438 * 7 2 1 10 10 C 1.34776 * 120.00270 * 180.02562 * 9 7 2 11 11 O 1.21289 * 119.99836 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99940 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.46799 * 179.97438 * 12 10 9 14 14 C 1.46905 * 110.99797 * 177.12418 * 13 12 10 15 15 C 1.53002 * 109.49470 * 304.14850 * 14 13 12 16 16 O 1.42892 * 109.47418 * 305.51625 * 15 14 13 17 17 C 1.53040 * 109.49689 * 184.04874 * 14 13 12 18 18 C 1.53036 * 109.54023 * 301.41616 * 17 14 13 19 19 C 1.53197 * 109.31201 * 298.63449 * 18 17 14 20 20 N 1.46925 * 108.77451 * 54.63398 * 19 18 17 21 21 C 1.34773 * 120.62764 * 126.37138 * 20 19 18 22 22 O 1.21287 * 119.99982 * 180.02562 * 21 20 19 23 23 C 1.50700 * 120.00154 * 0.02562 * 21 20 19 24 24 C 1.53779 * 113.61494 * 279.13856 * 23 21 20 25 25 C 1.53962 * 87.02002 * 220.04713 * 24 23 21 26 26 C 1.53781 * 113.61465 * 181.52789 * 23 21 20 27 27 C 1.46930 * 118.74029 * 306.39468 * 20 19 18 28 28 H 0.97000 * 120.00361 * 180.02562 * 1 2 3 29 29 H 0.97003 * 119.99583 * 0.02562 * 9 7 2 30 30 H 1.08991 * 109.47155 * 299.99880 * 12 10 9 31 31 H 1.09004 * 109.46974 * 59.99908 * 12 10 9 32 32 H 1.00900 * 110.99871 * 301.07849 * 13 12 10 33 33 H 1.09001 * 109.47279 * 65.52083 * 15 14 13 34 34 H 1.09004 * 109.46454 * 185.51824 * 15 14 13 35 35 H 0.96694 * 114.00496 * 180.02562 * 16 15 14 36 36 H 1.09002 * 109.45611 * 61.43468 * 17 14 13 37 37 H 1.08996 * 109.46039 * 181.39182 * 17 14 13 38 38 H 1.08997 * 109.50039 * 178.67895 * 18 17 14 39 39 H 1.09003 * 109.52529 * 58.59983 * 18 17 14 40 40 H 1.09005 * 109.58219 * 294.84837 * 19 18 17 41 41 H 1.08993 * 109.69991 * 174.49196 * 19 18 17 42 42 H 1.08998 * 112.84668 * 50.33516 * 23 21 20 43 43 H 1.09002 * 113.61695 * 334.56456 * 24 23 21 44 44 H 1.08991 * 113.61657 * 105.47438 * 24 23 21 45 45 H 1.08997 * 113.53427 * 270.81081 * 25 24 23 46 46 H 1.09001 * 113.74200 * 139.94027 * 25 24 23 47 47 H 1.08999 * 113.61848 * 254.52874 * 26 23 21 48 48 H 1.09005 * 113.61452 * 25.35404 * 26 23 21 49 49 H 1.08999 * 109.57996 * 293.82226 * 27 20 19 50 50 H 1.09000 * 109.58615 * 173.39971 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 3.1019 1.6963 1.2124 6 1 1.2831 2.7464 0.0006 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0010 12 6 1.2436 -4.8630 -0.0011 13 7 2.1982 -5.9795 -0.0016 14 6 1.4992 -7.2698 0.0666 15 6 0.5903 -7.2937 1.2972 16 8 1.3587 -6.9893 2.4629 17 6 2.5245 -8.4016 0.1659 18 6 3.4548 -8.3575 -1.0485 19 6 2.6320 -8.5610 -2.3246 20 7 1.5523 -7.5650 -2.3551 21 6 1.3891 -6.7617 -3.4249 22 8 0.4943 -5.9431 -3.4377 23 6 2.3185 -6.8807 -4.6052 24 6 3.6599 -6.1548 -4.4087 25 6 3.5451 -5.7141 -5.8795 26 6 2.0229 -5.8704 -5.7263 27 6 0.6543 -7.4609 -1.1968 28 1 -0.4851 -0.8400 0.0004 29 1 0.3533 -2.3906 -0.0005 30 1 0.6167 -4.9209 0.8885 31 1 0.6173 -4.9204 -0.8914 32 1 2.8028 -5.9380 -0.8084 33 1 -0.2003 -6.5526 1.1794 34 1 0.1473 -8.2840 1.4024 35 1 0.8458 -6.9871 3.2826 36 1 3.1107 -8.2815 1.0770 37 1 2.0061 -9.3600 0.1916 38 1 4.1993 -9.1492 -0.9654 39 1 3.9555 -7.3901 -1.0889 40 1 2.2044 -9.5637 -2.3276 41 1 3.2713 -8.4338 -3.1981 42 1 2.4247 -7.9063 -4.9586 43 1 3.6093 -5.3281 -3.7001 44 1 4.4962 -6.8270 -4.2175 45 1 3.9881 -6.4206 -6.5813 46 1 3.8630 -4.6865 -6.0558 47 1 1.5397 -6.3134 -6.5971 48 1 1.5226 -4.9664 -5.3787 49 1 0.0655 -8.3739 -1.1080 50 1 -0.0099 -6.6063 -1.3251 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717248557.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:07 Heat of formation + Delta-G solvation = -88.950824 kcal Electronic energy + Delta-G solvation = -32079.142219 eV Core-core repulsion = 27914.208330 eV Total energy + Delta-G solvation = -4164.933888 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.00729 -39.34183 -38.00404 -37.28451 -36.35646 -34.64219 -33.99180 -32.47169 -31.01806 -30.50707 -27.62753 -26.43074 -25.92891 -25.69447 -24.83207 -23.80633 -22.31272 -20.60195 -19.62415 -19.22483 -18.55680 -17.79481 -17.65029 -17.34642 -16.69227 -16.14550 -15.77514 -15.53756 -15.08459 -14.82654 -14.50989 -14.33659 -14.29002 -14.06452 -13.68663 -13.51449 -13.37197 -13.04313 -12.93189 -12.78852 -12.53063 -12.32166 -12.22433 -12.10171 -11.82239 -11.34971 -11.26182 -11.10773 -11.04599 -10.88399 -10.84841 -10.66607 -10.54286 -10.48415 -10.14712 -9.92212 -9.76486 -9.68076 -9.43874 -8.90789 -8.35954 -7.93478 -7.87102 -6.65120 -3.77093 2.53729 2.78351 3.38175 3.40088 3.60947 3.98259 4.02524 4.23917 4.31941 4.36921 4.43643 4.46331 4.54634 4.65212 4.68006 4.81156 4.84837 4.95986 5.09251 5.14262 5.18248 5.20442 5.28382 5.35075 5.37038 5.45749 5.51064 5.54822 5.56837 5.60518 5.67455 5.80447 5.82447 5.86973 5.89817 5.96494 6.03060 6.15014 6.18187 6.24064 6.27994 6.37029 7.22799 7.28100 7.64235 7.75046 7.91716 8.10979 8.18430 8.72294 8.92353 9.59761 10.01447 10.78552 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009424 B = 0.004244 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2970.284240 B = 6596.038556 C = 8542.124131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.011 4.011 3 Si 1.091 2.909 4 H -0.285 1.285 5 H -0.284 1.284 6 H -0.280 1.280 7 C -0.379 4.379 8 H 0.097 0.903 9 N -0.577 5.577 10 C 0.451 3.549 11 O -0.577 6.577 12 C 0.044 3.956 13 N -0.633 5.633 14 C 0.104 3.896 15 C 0.090 3.910 16 O -0.545 6.545 17 C -0.099 4.099 18 C -0.141 4.141 19 C 0.106 3.894 20 N -0.610 5.610 21 C 0.523 3.477 22 O -0.531 6.531 23 C -0.137 4.137 24 C -0.124 4.124 25 C -0.141 4.141 26 C -0.118 4.118 27 C 0.077 3.923 28 H 0.260 0.740 29 H 0.374 0.626 30 H 0.085 0.915 31 H 0.046 0.954 32 H 0.346 0.654 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.372 0.628 36 H 0.085 0.915 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.067 0.933 41 H 0.087 0.913 42 H 0.110 0.890 43 H 0.090 0.910 44 H 0.075 0.925 45 H 0.081 0.919 46 H 0.074 0.926 47 H 0.069 0.931 48 H 0.096 0.904 49 H 0.069 0.931 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.802 -22.151 -5.981 23.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.213 4.213 3 Si 0.918 3.082 4 H -0.211 1.211 5 H -0.211 1.211 6 H -0.205 1.205 7 C -0.508 4.508 8 H 0.115 0.885 9 N -0.215 5.215 10 C 0.237 3.763 11 O -0.460 6.460 12 C -0.088 4.088 13 N -0.266 5.266 14 C 0.010 3.990 15 C 0.011 3.989 16 O -0.349 6.349 17 C -0.137 4.137 18 C -0.179 4.179 19 C -0.017 4.017 20 N -0.344 5.344 21 C 0.311 3.689 22 O -0.407 6.407 23 C -0.158 4.158 24 C -0.162 4.162 25 C -0.179 4.179 26 C -0.155 4.155 27 C -0.048 4.048 28 H 0.072 0.928 29 H 0.207 0.793 30 H 0.103 0.897 31 H 0.064 0.936 32 H 0.167 0.833 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.218 0.782 36 H 0.103 0.897 37 H 0.081 0.919 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.105 0.895 42 H 0.128 0.872 43 H 0.109 0.891 44 H 0.093 0.907 45 H 0.100 0.900 46 H 0.093 0.907 47 H 0.088 0.912 48 H 0.114 0.886 49 H 0.087 0.913 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.574 -19.937 -5.774 20.915 hybrid contribution -1.363 -2.016 -0.408 2.467 sum 1.211 -21.953 -6.182 22.839 Atomic orbital electron populations 1.70882 1.06492 1.29338 1.47559 1.26473 0.96576 1.02531 0.95726 0.83136 0.74402 0.73730 0.76972 1.21114 1.21070 1.20462 1.20501 0.94554 0.83927 1.51853 0.88493 1.41906 1.08095 1.05523 1.66023 1.19673 0.88335 0.84374 0.83925 1.90503 1.13713 1.86995 1.54830 1.21771 0.94895 0.91256 1.00917 1.60215 1.19546 0.98511 1.48343 1.21330 0.93697 0.92080 0.91865 1.22056 0.92623 0.98344 0.85908 1.86672 1.38190 1.93848 1.16158 1.21445 0.96956 0.96006 0.99247 1.21978 0.98279 1.03588 0.94053 1.21825 0.88845 0.91512 0.99502 1.48006 1.32111 1.37249 1.17014 1.20659 0.84864 0.79807 0.83569 1.90721 1.33700 1.35531 1.80752 1.22793 0.96798 1.01228 0.95016 1.22909 0.94654 1.00400 0.98193 1.22847 0.96468 1.02282 0.96277 1.22807 0.96601 0.99456 0.96681 1.22293 0.93253 1.03368 0.85840 0.92816 0.79283 0.89739 0.93596 0.83296 0.93583 0.93591 0.78246 0.89677 0.91907 0.90413 0.90348 0.91428 0.89491 0.87201 0.89128 0.90653 0.90039 0.90708 0.91185 0.88556 0.91318 0.88507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.50 13.68 55.50 0.76 -25.74 16 2 C -0.01 -0.31 5.50 -17.47 -0.10 -0.41 16 3 Si 1.09 25.37 29.92 -169.99 -5.09 20.28 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.38 -11.23 9.68 -14.94 -0.14 -11.38 16 8 H 0.10 3.03 7.16 -52.48 -0.38 2.65 16 9 N -0.58 -15.64 5.28 -10.96 -0.06 -15.70 16 10 C 0.45 11.57 7.83 -10.98 -0.09 11.49 16 11 O -0.58 -16.74 15.84 5.55 0.09 -16.65 16 12 C 0.04 0.87 5.39 -4.97 -0.03 0.84 16 13 N -0.63 -11.02 5.34 -101.09 -0.54 -11.56 16 14 C 0.10 1.32 0.47 -131.48 -0.06 1.26 16 15 C 0.09 1.04 5.24 37.16 0.19 1.23 16 16 O -0.55 -7.15 12.95 -35.23 -0.46 -7.61 16 17 C -0.10 -1.05 4.81 -26.69 -0.13 -1.18 16 18 C -0.14 -1.33 5.76 -26.61 -0.15 -1.48 16 19 C 0.11 0.90 6.31 -3.71 -0.02 0.87 16 20 N -0.61 -7.19 2.47 -172.77 -0.43 -7.61 16 21 C 0.52 7.36 7.22 -10.99 -0.08 7.28 16 22 O -0.53 -9.80 15.32 5.55 0.09 -9.71 16 23 C -0.14 -1.48 2.72 -90.96 -0.25 -1.72 16 24 C -0.12 -1.33 7.16 -25.82 -0.18 -1.52 16 25 C -0.14 -1.38 8.09 -25.82 -0.21 -1.59 16 26 C -0.12 -1.34 7.40 -25.92 -0.19 -1.53 16 27 C 0.08 0.95 5.03 -3.71 -0.02 0.93 16 28 H 0.26 7.43 6.78 -40.82 -0.28 7.16 16 29 H 0.37 9.53 6.73 -40.82 -0.27 9.26 16 30 H 0.08 1.56 6.19 -51.93 -0.32 1.24 16 31 H 0.05 0.91 6.44 -51.93 -0.33 0.58 16 32 H 0.35 6.40 6.18 -39.29 -0.24 6.16 16 33 H 0.05 0.54 6.61 -51.93 -0.34 0.20 16 34 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.37 3.19 9.12 45.56 0.42 3.60 16 36 H 0.08 1.07 7.81 -51.93 -0.41 0.66 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.95 6.59 -51.93 -0.34 0.61 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.09 0.62 5.36 -51.93 -0.28 0.34 16 42 H 0.11 0.88 7.55 -51.93 -0.39 0.49 16 43 H 0.09 1.28 8.09 -51.93 -0.42 0.86 16 44 H 0.07 0.65 7.88 -51.93 -0.41 0.24 16 45 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.10 1.38 7.45 -51.93 -0.39 1.00 16 49 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 50 H 0.10 1.44 5.19 -51.93 -0.27 1.17 16 LS Contribution 386.99 15.07 5.83 5.83 Total: -1.00 -37.65 386.99 -8.09 -45.75 By element: Atomic # 1 Polarization: 26.45 SS G_CDS: -6.84 Total: 19.61 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -1.46 Total: 3.10 kcal Atomic # 7 Polarization: -60.34 SS G_CDS: -0.27 Total: -60.60 kcal Atomic # 8 Polarization: -33.69 SS G_CDS: -0.28 Total: -33.97 kcal Atomic # 14 Polarization: 25.37 SS G_CDS: -5.09 Total: 20.28 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.65 -8.09 -45.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717248557.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.202 kcal (2) G-P(sol) polarization free energy of solvation -37.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds