Wall clock time and date at job start Sat Apr 11 2020 05:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86801 * 120.00272 * 2 1 4 4 H 1.48495 * 109.46999 * 240.00612 * 3 2 1 5 5 H 1.48495 * 109.47150 * 120.00035 * 3 2 1 6 6 H 1.48504 * 109.46766 * 0.02562 * 3 2 1 7 7 C 1.38953 * 119.99726 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99654 * 179.97438 * 7 2 1 9 9 N 1.37089 * 120.00316 * 359.97438 * 7 2 1 10 10 C 1.34776 * 120.00270 * 180.02562 * 9 7 2 11 11 O 1.21289 * 119.99836 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99940 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.46799 * 179.97438 * 12 10 9 14 14 C 1.46905 * 110.99797 * 177.12418 * 13 12 10 15 15 C 1.53002 * 109.49470 * 304.14850 * 14 13 12 16 16 O 1.42892 * 109.47418 * 305.51625 * 15 14 13 17 17 C 1.53040 * 109.49689 * 184.04874 * 14 13 12 18 18 C 1.53036 * 109.54023 * 301.41616 * 17 14 13 19 19 C 1.53197 * 109.31201 * 298.63449 * 18 17 14 20 20 N 1.46925 * 108.77451 * 54.63398 * 19 18 17 21 21 C 1.34773 * 120.62764 * 126.37138 * 20 19 18 22 22 O 1.21287 * 119.99982 * 180.02562 * 21 20 19 23 23 C 1.50700 * 120.00154 * 0.02562 * 21 20 19 24 24 C 1.53779 * 113.61494 * 279.13856 * 23 21 20 25 25 C 1.53962 * 87.02002 * 220.04713 * 24 23 21 26 26 C 1.53781 * 113.61465 * 181.52789 * 23 21 20 27 27 C 1.46930 * 118.74029 * 306.39468 * 20 19 18 28 28 H 0.97000 * 120.00361 * 180.02562 * 1 2 3 29 29 H 0.97003 * 119.99583 * 0.02562 * 9 7 2 30 30 H 1.08991 * 109.47155 * 299.99880 * 12 10 9 31 31 H 1.09004 * 109.46974 * 59.99908 * 12 10 9 32 32 H 1.00900 * 110.99871 * 301.07849 * 13 12 10 33 33 H 1.09001 * 109.47279 * 65.52083 * 15 14 13 34 34 H 1.09004 * 109.46454 * 185.51824 * 15 14 13 35 35 H 0.96694 * 114.00496 * 180.02562 * 16 15 14 36 36 H 1.09002 * 109.45611 * 61.43468 * 17 14 13 37 37 H 1.08996 * 109.46039 * 181.39182 * 17 14 13 38 38 H 1.08997 * 109.50039 * 178.67895 * 18 17 14 39 39 H 1.09003 * 109.52529 * 58.59983 * 18 17 14 40 40 H 1.09005 * 109.58219 * 294.84837 * 19 18 17 41 41 H 1.08993 * 109.69991 * 174.49196 * 19 18 17 42 42 H 1.08998 * 112.84668 * 50.33516 * 23 21 20 43 43 H 1.09002 * 113.61695 * 334.56456 * 24 23 21 44 44 H 1.08991 * 113.61657 * 105.47438 * 24 23 21 45 45 H 1.08997 * 113.53427 * 270.81081 * 25 24 23 46 46 H 1.09001 * 113.74200 * 139.94027 * 25 24 23 47 47 H 1.08999 * 113.61848 * 254.52874 * 26 23 21 48 48 H 1.09005 * 113.61452 * 25.35404 * 26 23 21 49 49 H 1.08999 * 109.57996 * 293.82226 * 27 20 19 50 50 H 1.09000 * 109.58615 * 173.39971 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 3.1019 1.6963 1.2124 6 1 1.2831 2.7464 0.0006 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0010 12 6 1.2436 -4.8630 -0.0011 13 7 2.1982 -5.9795 -0.0016 14 6 1.4992 -7.2698 0.0666 15 6 0.5903 -7.2937 1.2972 16 8 1.3587 -6.9893 2.4629 17 6 2.5245 -8.4016 0.1659 18 6 3.4548 -8.3575 -1.0485 19 6 2.6320 -8.5610 -2.3246 20 7 1.5523 -7.5650 -2.3551 21 6 1.3891 -6.7617 -3.4249 22 8 0.4943 -5.9431 -3.4377 23 6 2.3185 -6.8807 -4.6052 24 6 3.6599 -6.1548 -4.4087 25 6 3.5451 -5.7141 -5.8795 26 6 2.0229 -5.8704 -5.7263 27 6 0.6543 -7.4609 -1.1968 28 1 -0.4851 -0.8400 0.0004 29 1 0.3533 -2.3906 -0.0005 30 1 0.6167 -4.9209 0.8885 31 1 0.6173 -4.9204 -0.8914 32 1 2.8028 -5.9380 -0.8084 33 1 -0.2003 -6.5526 1.1794 34 1 0.1473 -8.2840 1.4024 35 1 0.8458 -6.9871 3.2826 36 1 3.1107 -8.2815 1.0770 37 1 2.0061 -9.3600 0.1916 38 1 4.1993 -9.1492 -0.9654 39 1 3.9555 -7.3901 -1.0889 40 1 2.2044 -9.5637 -2.3276 41 1 3.2713 -8.4338 -3.1981 42 1 2.4247 -7.9063 -4.9586 43 1 3.6093 -5.3281 -3.7001 44 1 4.4962 -6.8270 -4.2175 45 1 3.9881 -6.4206 -6.5813 46 1 3.8630 -4.6865 -6.0558 47 1 1.5397 -6.3134 -6.5971 48 1 1.5226 -4.9664 -5.3787 49 1 0.0655 -8.3739 -1.1080 50 1 -0.0099 -6.6063 -1.3251 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717248557.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:06 Heat of formation + Delta-G solvation = -119.952471 kcal Electronic energy + Delta-G solvation = -32080.486551 eV Core-core repulsion = 27914.208330 eV Total energy + Delta-G solvation = -4166.278221 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.01169 -40.59878 -39.81735 -38.30035 -37.33127 -36.50441 -35.54737 -33.51817 -33.10869 -31.73601 -28.61198 -27.97044 -26.97546 -26.62210 -25.80957 -25.68537 -23.22850 -21.60636 -21.50336 -20.25128 -20.00560 -19.52793 -18.70121 -18.31354 -18.26199 -17.21425 -17.12645 -16.82757 -16.49953 -16.06756 -15.89843 -15.80181 -15.47950 -15.32388 -15.18536 -14.72486 -14.40920 -14.37253 -14.04780 -13.82954 -13.68261 -13.49077 -13.43526 -13.22198 -13.14150 -13.02531 -12.79844 -12.46104 -12.16766 -11.95100 -11.93209 -11.92795 -11.73995 -11.56911 -11.52899 -11.38789 -11.36374 -10.84702 -10.73788 -10.47074 -10.16416 -9.91164 -9.23674 -8.98445 -6.11521 1.48419 1.49114 1.49752 1.79483 1.88542 1.94704 2.36653 2.73029 3.11718 3.21583 3.37400 3.42667 3.50494 3.61105 3.72018 3.76557 3.83602 3.99666 4.01723 4.05683 4.16853 4.20968 4.25651 4.29896 4.36512 4.47349 4.51894 4.58478 4.60354 4.70591 4.72718 4.74817 4.80987 4.82609 4.94062 5.00099 5.05646 5.10889 5.32091 5.38689 5.40742 5.49566 5.53674 5.87713 5.97128 6.25501 6.32553 6.51873 6.68947 6.97001 7.09172 7.37850 7.85367 8.48540 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009424 B = 0.004244 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2970.284240 B = 6596.038556 C = 8542.124131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.043 4.043 3 Si 1.136 2.864 4 H -0.273 1.273 5 H -0.270 1.270 6 H -0.269 1.269 7 C -0.411 4.411 8 H 0.073 0.927 9 N -0.587 5.587 10 C 0.445 3.555 11 O -0.614 6.614 12 C 0.068 3.932 13 N -0.644 5.644 14 C 0.099 3.901 15 C 0.087 3.913 16 O -0.572 6.572 17 C -0.093 4.093 18 C -0.138 4.138 19 C 0.103 3.897 20 N -0.606 5.606 21 C 0.509 3.491 22 O -0.590 6.590 23 C -0.126 4.126 24 C -0.125 4.125 25 C -0.129 4.129 26 C -0.128 4.128 27 C 0.079 3.921 28 H 0.256 0.744 29 H 0.381 0.619 30 H 0.100 0.900 31 H 0.043 0.957 32 H 0.336 0.664 33 H 0.037 0.963 34 H 0.085 0.915 35 H 0.390 0.610 36 H 0.064 0.936 37 H 0.097 0.903 38 H 0.108 0.892 39 H 0.043 0.957 40 H 0.102 0.898 41 H 0.105 0.895 42 H 0.154 0.846 43 H 0.042 0.958 44 H 0.105 0.895 45 H 0.118 0.882 46 H 0.061 0.939 47 H 0.089 0.911 48 H 0.051 0.949 49 H 0.103 0.897 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.406 -25.350 -6.581 26.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.241 4.241 3 Si 0.955 3.045 4 H -0.198 1.198 5 H -0.195 1.195 6 H -0.194 1.194 7 C -0.540 4.540 8 H 0.091 0.909 9 N -0.226 5.226 10 C 0.233 3.767 11 O -0.500 6.500 12 C -0.065 4.065 13 N -0.276 5.276 14 C 0.007 3.993 15 C 0.008 3.992 16 O -0.379 6.379 17 C -0.131 4.131 18 C -0.176 4.176 19 C -0.018 4.018 20 N -0.338 5.338 21 C 0.299 3.701 22 O -0.470 6.470 23 C -0.146 4.146 24 C -0.162 4.162 25 C -0.166 4.166 26 C -0.166 4.166 27 C -0.046 4.046 28 H 0.067 0.933 29 H 0.214 0.786 30 H 0.118 0.882 31 H 0.061 0.939 32 H 0.156 0.844 33 H 0.055 0.945 34 H 0.103 0.897 35 H 0.238 0.762 36 H 0.083 0.917 37 H 0.116 0.884 38 H 0.126 0.874 39 H 0.062 0.938 40 H 0.120 0.880 41 H 0.123 0.877 42 H 0.171 0.829 43 H 0.061 0.939 44 H 0.124 0.876 45 H 0.137 0.863 46 H 0.079 0.921 47 H 0.108 0.892 48 H 0.070 0.930 49 H 0.121 0.879 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.165 -23.208 -6.340 24.266 hybrid contribution -1.551 -1.105 -0.167 1.912 sum 1.614 -24.313 -6.507 25.221 Atomic orbital electron populations 1.70964 1.07028 1.29233 1.48167 1.27968 0.96678 1.05460 0.94010 0.82627 0.73821 0.70037 0.78008 1.19821 1.19521 1.19395 1.20533 0.93853 0.85592 1.53985 0.90893 1.41991 1.08383 1.05651 1.66553 1.20757 0.88299 0.85854 0.81822 1.90461 1.15615 1.87861 1.56030 1.21486 0.94480 0.89144 1.01356 1.60256 1.19576 0.99880 1.47911 1.21601 0.94565 0.90312 0.92865 1.22175 0.91840 1.00226 0.84957 1.86617 1.39660 1.94124 1.17468 1.21444 0.96488 0.96318 0.98867 1.21962 0.98666 1.02826 0.94129 1.22139 0.88091 0.91934 0.99637 1.48157 1.32486 1.37127 1.16040 1.21348 0.84615 0.79160 0.84928 1.90694 1.36340 1.37944 1.82045 1.22913 0.95348 1.03138 0.93247 1.22832 0.95927 0.99581 0.97894 1.22879 0.95017 1.02575 0.96175 1.22777 0.97784 0.98270 0.97785 1.22240 0.93116 1.03583 0.85626 0.93350 0.78598 0.88244 0.93908 0.84423 0.94484 0.89683 0.76187 0.91702 0.88427 0.87405 0.93777 0.87964 0.87707 0.82853 0.93883 0.87622 0.86337 0.92051 0.89207 0.93008 0.87907 0.91808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.57 13.68 21.66 0.30 -54.27 16 2 C -0.04 -2.52 5.50 84.93 0.47 -2.05 16 3 Si 1.14 51.38 29.92 68.60 2.05 53.43 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.41 -25.38 9.68 84.04 0.81 -24.56 16 8 H 0.07 4.79 7.16 -2.91 -0.02 4.77 16 9 N -0.59 -33.46 5.28 -306.98 -1.62 -35.08 16 10 C 0.44 24.08 7.83 87.66 0.69 24.77 16 11 O -0.61 -37.59 15.84 -3.06 -0.05 -37.64 16 12 C 0.07 2.81 5.39 85.56 0.46 3.27 16 13 N -0.64 -23.00 5.34 -473.75 -2.53 -25.53 16 14 C 0.10 2.40 0.47 3.60 0.00 2.40 16 15 C 0.09 1.86 5.24 71.98 0.38 2.23 16 16 O -0.57 -14.38 12.95 -148.98 -1.93 -16.31 16 17 C -0.09 -1.74 4.81 30.62 0.15 -1.59 16 18 C -0.14 -2.23 5.76 30.67 0.18 -2.05 16 19 C 0.10 1.35 6.31 86.36 0.54 1.90 16 20 N -0.61 -13.38 2.47 -818.90 -2.03 -15.41 16 21 C 0.51 14.44 7.22 87.66 0.63 15.07 16 22 O -0.59 -23.16 15.32 -3.05 -0.05 -23.21 16 23 C -0.13 -2.53 2.72 -11.01 -0.03 -2.56 16 24 C -0.12 -2.62 7.16 31.18 0.22 -2.40 16 25 C -0.13 -2.38 8.09 31.18 0.25 -2.12 16 26 C -0.13 -2.94 7.40 31.12 0.23 -2.71 16 27 C 0.08 1.84 5.03 86.36 0.43 2.28 16 28 H 0.26 15.03 6.78 -92.71 -0.63 14.40 16 29 H 0.38 20.42 6.73 -92.71 -0.62 19.79 16 30 H 0.10 3.79 6.19 -2.39 -0.01 3.77 16 31 H 0.04 1.82 6.44 -2.39 -0.02 1.80 16 32 H 0.34 13.03 6.18 -89.69 -0.55 12.47 16 33 H 0.04 0.85 6.61 -2.39 -0.02 0.83 16 34 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 35 H 0.39 6.21 9.12 -74.06 -0.68 5.54 16 36 H 0.06 1.51 7.81 -2.39 -0.02 1.49 16 37 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.04 1.04 6.59 -2.39 -0.02 1.02 16 40 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 41 H 0.10 1.03 5.36 -2.39 -0.01 1.02 16 42 H 0.15 1.76 7.55 -2.39 -0.02 1.75 16 43 H 0.04 1.32 8.09 -2.39 -0.02 1.30 16 44 H 0.11 1.55 7.88 -2.39 -0.02 1.53 16 45 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 47 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 48 H 0.05 1.64 7.45 -2.38 -0.02 1.63 16 49 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 50 H 0.06 1.95 5.19 -2.39 -0.01 1.93 16 Total: -1.00 -88.71 386.99 -1.15 -89.86 By element: Atomic # 1 Polarization: 53.01 SS G_CDS: -0.72 Total: 52.29 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: 5.42 Total: 11.87 kcal Atomic # 7 Polarization: -124.41 SS G_CDS: -5.88 Total: -130.29 kcal Atomic # 8 Polarization: -75.14 SS G_CDS: -2.02 Total: -77.16 kcal Atomic # 14 Polarization: 51.38 SS G_CDS: 2.05 Total: 53.43 kcal Total: -88.71 -1.15 -89.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717248557.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.095 kcal (2) G-P(sol) polarization free energy of solvation -88.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds