Wall clock time and date at job start Sat Apr 11 2020 05:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99757 * 2 1 4 4 H 1.48497 * 109.46976 * 272.51272 * 3 2 1 5 5 H 1.48503 * 109.47080 * 32.51481 * 3 2 1 6 6 H 1.48500 * 109.46881 * 152.51438 * 3 2 1 7 7 C 1.38810 * 120.00108 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99948 * 3.93085 * 7 2 1 9 9 N 1.36930 * 119.99852 * 183.93199 * 7 2 1 10 10 C 1.46503 * 119.99831 * 184.89309 * 9 7 2 11 11 C 1.53003 * 109.47101 * 184.26298 * 10 9 7 12 12 N 1.46506 * 109.53815 * 54.69008 * 11 10 9 13 13 C 1.34774 * 120.00092 * 56.29780 * 12 11 10 14 14 O 1.21282 * 120.00100 * 5.24614 * 13 12 11 15 15 C 1.50695 * 120.00282 * 185.25153 * 13 12 11 16 16 C 1.52996 * 109.47332 * 178.38256 * 15 13 12 17 17 H 1.08995 * 109.29913 * 306.88888 * 16 15 13 18 18 C 1.52926 * 109.30088 * 187.50613 * 16 15 13 19 19 C 1.53342 * 108.67366 * 188.93918 * 18 16 15 20 20 C 1.53063 * 108.42858 * 67.53419 * 19 18 16 21 21 C 1.50181 * 109.89054 * 311.09693 * 20 19 18 22 22 O 1.21276 * 118.24551 * 197.60567 * 21 20 19 23 23 N 1.33357 * 123.50663 * 17.58325 * 21 20 19 24 24 C 1.53178 * 109.54223 * 174.86389 * 11 10 9 25 25 C 1.53285 * 109.06338 * 176.85603 * 24 11 10 26 26 O 1.42901 * 109.45944 * 302.44708 * 25 24 11 27 27 C 1.42908 * 114.09955 * 61.15824 * 26 25 24 28 28 C 1.53097 * 109.41193 * 298.84357 * 27 26 25 29 29 H 0.96998 * 120.00409 * 359.97438 * 1 2 3 30 30 H 0.96997 * 120.00324 * 4.90293 * 9 7 2 31 31 H 1.09009 * 109.46857 * 64.27056 * 10 9 7 32 32 H 1.08995 * 109.47956 * 304.26987 * 10 9 7 33 33 H 0.96994 * 119.99525 * 236.28687 * 12 11 10 34 34 H 1.09006 * 109.47225 * 298.38885 * 15 13 12 35 35 H 1.08998 * 109.46897 * 58.38257 * 15 13 12 36 36 H 1.09001 * 109.60343 * 308.69405 * 18 16 15 37 37 H 1.09005 * 109.59965 * 69.17953 * 18 16 15 38 38 H 1.08998 * 109.67028 * 307.79632 * 19 18 16 39 39 H 1.09007 * 109.70049 * 187.28537 * 19 18 16 40 40 H 1.08998 * 109.40368 * 190.97037 * 20 19 18 41 41 H 1.08995 * 109.40289 * 71.22338 * 20 19 18 42 42 H 0.96999 * 117.94937 * 177.75452 * 23 21 20 43 43 H 1.09004 * 109.52518 * 296.84677 * 24 11 10 44 44 H 1.09000 * 109.52202 * 57.03626 * 24 11 10 45 45 H 1.09002 * 109.45760 * 182.45182 * 25 24 11 46 46 H 1.09003 * 109.46339 * 62.44885 * 25 24 11 47 47 H 1.08995 * 109.48239 * 178.86044 * 27 26 25 48 48 H 1.09001 * 109.48581 * 58.82861 * 27 26 25 49 49 H 1.09004 * 109.51797 * 297.69557 * 28 27 26 50 50 H 1.09000 * 109.51622 * 177.51389 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4444 2.0771 -1.3987 5 1 1.4751 2.6368 0.7526 6 1 3.5733 1.4255 0.6462 7 6 2.0103 -1.2021 -0.0005 8 1 1.4722 -2.1363 -0.0651 9 7 3.3772 -1.2035 0.0808 10 6 4.1161 -2.4638 -0.0276 11 6 5.6062 -2.2027 0.2010 12 7 5.7928 -1.5188 1.4832 13 6 5.3206 -2.0729 2.6174 14 8 4.8263 -3.1801 2.5913 15 6 5.4067 -1.3167 3.9181 16 6 4.7684 -2.1466 5.0337 17 1 3.7617 -2.4385 4.7347 18 6 4.6885 -1.3044 6.3077 19 6 4.2589 -2.2095 7.4685 20 6 5.3885 -3.2030 7.7510 21 6 5.8390 -3.8426 6.4691 22 8 6.4825 -4.8685 6.5346 23 7 5.5690 -3.3429 5.2625 24 6 6.3635 -3.5341 0.2155 25 6 7.8633 -3.2554 0.3662 26 8 8.3002 -2.4113 -0.7008 27 6 7.6588 -1.1347 -0.7351 28 6 6.1526 -1.3272 -0.9309 29 1 -0.4850 0.8400 0.0004 30 1 3.8562 -0.3701 0.2103 31 1 3.9697 -2.8865 -1.0217 32 1 3.7508 -3.1650 0.7227 33 1 6.2562 -0.6674 1.5157 34 1 6.4526 -1.1267 4.1594 35 1 4.8778 -0.3684 3.8227 36 1 5.6662 -0.8730 6.5228 37 1 3.9561 -0.5081 6.1743 38 1 3.3534 -2.7513 7.1956 39 1 4.0714 -1.6050 8.3560 40 1 5.0307 -3.9736 8.4338 41 1 6.2272 -2.6775 8.2077 42 1 5.9282 -3.8044 4.4886 43 1 6.0176 -4.1408 1.0524 44 1 6.1842 -4.0652 -0.7193 45 1 8.4125 -4.1964 0.3335 46 1 8.0466 -2.7604 1.3199 47 1 8.0606 -0.5480 -1.5611 48 1 7.8394 -0.6117 0.2040 49 1 5.9691 -1.8138 -1.8888 50 1 5.6562 -0.3570 -0.9131 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717265676.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:13 Heat of formation + Delta-G solvation = -113.611696 kcal Electronic energy + Delta-G solvation = -31917.824295 eV Core-core repulsion = 27751.821031 eV Total energy + Delta-G solvation = -4166.003264 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.92720 -40.21547 -38.58579 -36.83326 -35.88698 -33.84872 -33.33439 -32.22046 -31.25597 -31.04957 -30.74983 -27.84223 -26.87576 -23.94098 -23.80994 -23.29276 -22.57470 -21.39648 -20.78144 -19.31806 -19.20233 -17.80905 -17.41356 -17.21550 -16.31362 -16.16287 -16.05023 -15.65161 -15.36986 -15.13639 -14.64163 -14.52471 -14.38421 -14.21900 -13.86176 -13.74148 -13.44786 -13.33830 -13.13373 -12.86044 -12.66418 -12.60493 -12.17498 -11.96833 -11.85723 -11.69261 -11.46794 -11.31740 -11.26223 -11.21005 -11.20050 -10.99257 -10.70005 -10.43084 -10.23135 -9.85362 -9.69725 -9.63551 -9.44424 -9.08422 -8.90018 -8.78267 -7.23520 -5.80549 -3.15119 2.60922 2.75665 3.20350 3.20914 3.26811 3.29593 3.35892 3.81209 4.30776 4.39432 4.45494 4.51220 4.57696 4.61573 4.82021 4.85554 4.89101 4.94409 4.97341 5.03915 5.11540 5.26850 5.27972 5.29961 5.36904 5.49539 5.53659 5.56252 5.60183 5.63481 5.65850 5.66977 5.76626 5.86428 5.88280 5.99185 6.02340 6.12546 6.23417 6.36273 6.70000 6.80579 6.87674 7.11666 7.36914 7.61045 7.98220 8.20371 8.35569 8.38754 9.17942 9.89260 10.10449 11.38266 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008722 B = 0.004618 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3209.516253 B = 6061.333809 C = 8295.957073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.887 3.113 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.236 4.236 8 H 0.088 0.912 9 N -0.749 5.749 10 C 0.147 3.853 11 C 0.171 3.829 12 N -0.718 5.718 13 C 0.521 3.479 14 O -0.526 6.526 15 C -0.157 4.157 16 C 0.156 3.844 17 H 0.091 0.909 18 C -0.133 4.133 19 C -0.124 4.124 20 C -0.135 4.135 21 C 0.517 3.483 22 O -0.567 6.567 23 N -0.704 5.704 24 C -0.162 4.162 25 C 0.066 3.934 26 O -0.384 6.384 27 C 0.061 3.939 28 C -0.157 4.157 29 H 0.259 0.741 30 H 0.358 0.642 31 H 0.029 0.971 32 H 0.057 0.943 33 H 0.394 0.606 34 H 0.095 0.905 35 H 0.111 0.889 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.404 0.596 43 H 0.096 0.904 44 H 0.079 0.921 45 H 0.091 0.909 46 H 0.046 0.954 47 H 0.094 0.906 48 H 0.045 0.955 49 H 0.090 0.910 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.206 0.675 10.068 19.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.193 4.193 3 Si 0.718 3.282 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.210 1.210 7 C -0.366 4.366 8 H 0.106 0.894 9 N -0.396 5.396 10 C 0.020 3.980 11 C 0.085 3.915 12 N -0.370 5.370 13 C 0.308 3.692 14 O -0.402 6.402 15 C -0.198 4.198 16 C 0.050 3.950 17 H 0.109 0.891 18 C -0.171 4.171 19 C -0.162 4.162 20 C -0.175 4.175 21 C 0.303 3.697 22 O -0.447 6.447 23 N -0.357 5.357 24 C -0.201 4.201 25 C -0.011 4.011 26 O -0.303 6.303 27 C -0.016 4.016 28 C -0.195 4.195 29 H 0.069 0.931 30 H 0.192 0.808 31 H 0.047 0.953 32 H 0.075 0.925 33 H 0.228 0.772 34 H 0.114 0.886 35 H 0.129 0.871 36 H 0.091 0.909 37 H 0.107 0.893 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.117 0.883 41 H 0.115 0.885 42 H 0.242 0.758 43 H 0.115 0.885 44 H 0.098 0.902 45 H 0.109 0.891 46 H 0.064 0.936 47 H 0.112 0.888 48 H 0.063 0.937 49 H 0.109 0.891 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 15.956 -0.672 10.095 18.893 hybrid contribution 0.471 1.871 -0.239 1.945 sum 16.427 1.199 9.856 19.194 Atomic orbital electron populations 1.69704 1.05052 1.25621 1.57845 1.24674 0.95179 0.96948 1.02463 0.86537 0.78641 0.85375 0.77663 1.21224 1.21841 1.20990 1.19055 0.80847 0.94652 1.42015 0.89396 1.42617 1.04174 1.03275 1.89492 1.21053 0.87200 0.90442 0.99349 1.20656 0.97031 0.91779 0.82057 1.46008 1.59397 1.24802 1.06758 1.20342 0.77220 0.86626 0.85030 1.90668 1.43559 1.19783 1.86172 1.22146 1.03716 1.00998 0.92953 1.20731 0.95895 0.84566 0.93798 0.89135 1.21969 1.03080 0.98396 0.93682 1.21657 0.98275 0.97398 0.98840 1.21646 1.00218 1.00217 0.95420 1.20178 0.79273 0.84435 0.85768 1.90746 1.41595 1.24770 1.87603 1.45651 1.53065 1.28435 1.08537 1.22584 0.95116 0.97720 1.04702 1.22559 0.94524 0.94416 0.89593 1.87918 1.63963 1.26800 1.51572 1.22586 0.92210 0.85430 1.01326 1.22466 0.95875 1.01711 0.99449 0.93127 0.80834 0.95336 0.92495 0.77241 0.88638 0.87076 0.90860 0.89282 0.90725 0.90355 0.88338 0.88490 0.75795 0.88534 0.90227 0.89104 0.93557 0.88760 0.93659 0.89098 0.89939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.83 13.97 55.49 0.78 -28.05 16 2 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 3 Si 0.89 21.03 27.94 -169.99 -4.75 16.28 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.00 6.24 56.52 0.35 -5.65 16 7 C -0.24 -6.52 10.47 -15.06 -0.16 -6.67 16 8 H 0.09 2.69 8.06 -52.49 -0.42 2.26 16 9 N -0.75 -16.76 4.99 -59.91 -0.30 -17.06 16 10 C 0.15 2.82 4.81 -4.04 -0.02 2.80 16 11 C 0.17 2.42 0.32 -131.63 -0.04 2.38 16 12 N -0.72 -9.00 3.75 -47.44 -0.18 -9.17 16 13 C 0.52 6.99 6.91 -10.99 -0.08 6.91 16 14 O -0.53 -8.72 10.89 5.56 0.06 -8.66 16 15 C -0.16 -1.54 5.34 -27.89 -0.15 -1.69 16 16 C 0.16 1.63 2.64 -68.37 -0.18 1.45 16 17 H 0.09 1.17 7.91 -51.93 -0.41 0.76 16 18 C -0.13 -1.01 5.30 -26.59 -0.14 -1.15 16 19 C -0.12 -0.92 6.03 -26.52 -0.16 -1.08 16 20 C -0.14 -1.19 6.03 -28.10 -0.17 -1.35 16 21 C 0.52 6.66 7.71 -11.87 -0.09 6.57 16 22 O -0.57 -9.74 17.78 5.56 0.10 -9.64 16 23 N -0.70 -8.53 5.01 -54.85 -0.27 -8.81 16 24 C -0.16 -2.13 4.83 -26.49 -0.13 -2.25 16 25 C 0.07 0.75 6.68 37.31 0.25 1.00 16 26 O -0.38 -4.74 10.77 -35.23 -0.38 -5.12 16 27 C 0.06 0.65 6.67 37.21 0.25 0.90 16 28 C -0.16 -2.00 4.82 -26.59 -0.13 -2.13 16 29 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 30 H 0.36 7.61 4.28 -40.82 -0.17 7.43 16 31 H 0.03 0.57 8.14 -51.92 -0.42 0.14 16 32 H 0.06 1.23 6.27 -51.93 -0.33 0.90 16 33 H 0.39 4.00 7.42 -40.82 -0.30 3.70 16 34 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.11 1.01 8.13 -51.93 -0.42 0.58 16 36 H 0.07 0.47 8.11 -51.93 -0.42 0.05 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 39 H 0.08 0.44 8.14 -51.92 -0.42 0.01 16 40 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.40 5.54 7.03 -40.82 -0.29 5.25 16 43 H 0.10 1.40 6.23 -51.93 -0.32 1.08 16 44 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.05 0.51 7.75 -51.93 -0.40 0.10 16 47 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.05 0.42 7.02 -51.93 -0.36 0.05 16 49 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 50 H 0.08 1.12 7.22 -51.93 -0.37 0.74 16 LS Contribution 382.88 15.07 5.77 5.77 Total: -1.00 -35.23 382.88 -8.28 -43.51 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: -8.06 Total: 15.30 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: -1.04 Total: 5.66 kcal Atomic # 7 Polarization: -63.12 SS G_CDS: 0.02 Total: -63.09 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -0.22 Total: -23.42 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.75 Total: 16.28 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.23 -8.28 -43.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717265676.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.105 kcal (2) G-P(sol) polarization free energy of solvation -35.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds