Wall clock time and date at job start Sat Apr 11 2020 05:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99757 * 2 1 4 4 H 1.48497 * 109.46976 * 272.51272 * 3 2 1 5 5 H 1.48503 * 109.47080 * 32.51481 * 3 2 1 6 6 H 1.48500 * 109.46881 * 152.51438 * 3 2 1 7 7 C 1.38810 * 120.00108 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99948 * 3.93085 * 7 2 1 9 9 N 1.36930 * 119.99852 * 183.93199 * 7 2 1 10 10 C 1.46503 * 119.99831 * 184.89309 * 9 7 2 11 11 C 1.53003 * 109.47101 * 184.26298 * 10 9 7 12 12 N 1.46506 * 109.53815 * 54.69008 * 11 10 9 13 13 C 1.34774 * 120.00092 * 56.29780 * 12 11 10 14 14 O 1.21282 * 120.00100 * 5.24614 * 13 12 11 15 15 C 1.50695 * 120.00282 * 185.25153 * 13 12 11 16 16 C 1.52996 * 109.47332 * 178.38256 * 15 13 12 17 17 H 1.08995 * 109.29913 * 306.88888 * 16 15 13 18 18 C 1.52926 * 109.30088 * 187.50613 * 16 15 13 19 19 C 1.53342 * 108.67366 * 188.93918 * 18 16 15 20 20 C 1.53063 * 108.42858 * 67.53419 * 19 18 16 21 21 C 1.50181 * 109.89054 * 311.09693 * 20 19 18 22 22 O 1.21276 * 118.24551 * 197.60567 * 21 20 19 23 23 N 1.33357 * 123.50663 * 17.58325 * 21 20 19 24 24 C 1.53178 * 109.54223 * 174.86389 * 11 10 9 25 25 C 1.53285 * 109.06338 * 176.85603 * 24 11 10 26 26 O 1.42901 * 109.45944 * 302.44708 * 25 24 11 27 27 C 1.42908 * 114.09955 * 61.15824 * 26 25 24 28 28 C 1.53097 * 109.41193 * 298.84357 * 27 26 25 29 29 H 0.96998 * 120.00409 * 359.97438 * 1 2 3 30 30 H 0.96997 * 120.00324 * 4.90293 * 9 7 2 31 31 H 1.09009 * 109.46857 * 64.27056 * 10 9 7 32 32 H 1.08995 * 109.47956 * 304.26987 * 10 9 7 33 33 H 0.96994 * 119.99525 * 236.28687 * 12 11 10 34 34 H 1.09006 * 109.47225 * 298.38885 * 15 13 12 35 35 H 1.08998 * 109.46897 * 58.38257 * 15 13 12 36 36 H 1.09001 * 109.60343 * 308.69405 * 18 16 15 37 37 H 1.09005 * 109.59965 * 69.17953 * 18 16 15 38 38 H 1.08998 * 109.67028 * 307.79632 * 19 18 16 39 39 H 1.09007 * 109.70049 * 187.28537 * 19 18 16 40 40 H 1.08998 * 109.40368 * 190.97037 * 20 19 18 41 41 H 1.08995 * 109.40289 * 71.22338 * 20 19 18 42 42 H 0.96999 * 117.94937 * 177.75452 * 23 21 20 43 43 H 1.09004 * 109.52518 * 296.84677 * 24 11 10 44 44 H 1.09000 * 109.52202 * 57.03626 * 24 11 10 45 45 H 1.09002 * 109.45760 * 182.45182 * 25 24 11 46 46 H 1.09003 * 109.46339 * 62.44885 * 25 24 11 47 47 H 1.08995 * 109.48239 * 178.86044 * 27 26 25 48 48 H 1.09001 * 109.48581 * 58.82861 * 27 26 25 49 49 H 1.09004 * 109.51797 * 297.69557 * 28 27 26 50 50 H 1.09000 * 109.51622 * 177.51389 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4444 2.0771 -1.3987 5 1 1.4751 2.6368 0.7526 6 1 3.5733 1.4255 0.6462 7 6 2.0103 -1.2021 -0.0005 8 1 1.4722 -2.1363 -0.0651 9 7 3.3772 -1.2035 0.0808 10 6 4.1161 -2.4638 -0.0276 11 6 5.6062 -2.2027 0.2010 12 7 5.7928 -1.5188 1.4832 13 6 5.3206 -2.0729 2.6174 14 8 4.8263 -3.1801 2.5913 15 6 5.4067 -1.3167 3.9181 16 6 4.7684 -2.1466 5.0337 17 1 3.7617 -2.4385 4.7347 18 6 4.6885 -1.3044 6.3077 19 6 4.2589 -2.2095 7.4685 20 6 5.3885 -3.2030 7.7510 21 6 5.8390 -3.8426 6.4691 22 8 6.4825 -4.8685 6.5346 23 7 5.5690 -3.3429 5.2625 24 6 6.3635 -3.5341 0.2155 25 6 7.8633 -3.2554 0.3662 26 8 8.3002 -2.4113 -0.7008 27 6 7.6588 -1.1347 -0.7351 28 6 6.1526 -1.3272 -0.9309 29 1 -0.4850 0.8400 0.0004 30 1 3.8562 -0.3701 0.2103 31 1 3.9697 -2.8865 -1.0217 32 1 3.7508 -3.1650 0.7227 33 1 6.2562 -0.6674 1.5157 34 1 6.4526 -1.1267 4.1594 35 1 4.8778 -0.3684 3.8227 36 1 5.6662 -0.8730 6.5228 37 1 3.9561 -0.5081 6.1743 38 1 3.3534 -2.7513 7.1956 39 1 4.0714 -1.6050 8.3560 40 1 5.0307 -3.9736 8.4338 41 1 6.2272 -2.6775 8.2077 42 1 5.9282 -3.8044 4.4886 43 1 6.0176 -4.1408 1.0524 44 1 6.1842 -4.0652 -0.7193 45 1 8.4125 -4.1964 0.3335 46 1 8.0466 -2.7604 1.3199 47 1 8.0606 -0.5480 -1.5611 48 1 7.8394 -0.6117 0.2040 49 1 5.9691 -1.8138 -1.8888 50 1 5.6562 -0.3570 -0.9131 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717265676.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:12 Heat of formation + Delta-G solvation = -141.559965 kcal Electronic energy + Delta-G solvation = -31919.036222 eV Core-core repulsion = 27751.821031 eV Total energy + Delta-G solvation = -4167.215192 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.96824 -41.19468 -39.60613 -37.83933 -37.19659 -35.51804 -34.10940 -33.54846 -32.80028 -32.11350 -31.84121 -28.73468 -28.30244 -25.22947 -24.83662 -24.37824 -23.45429 -22.96411 -21.76257 -20.47900 -20.03748 -19.74211 -18.38875 -18.16698 -17.24939 -17.18693 -17.00713 -16.81522 -16.50562 -16.30396 -16.16615 -15.61418 -15.42912 -15.25007 -15.10651 -14.83691 -14.51876 -14.48079 -14.37574 -14.03095 -13.90638 -13.72082 -13.43942 -13.20425 -12.93812 -12.85667 -12.78448 -12.55101 -12.35108 -12.18557 -12.09959 -11.90525 -11.84643 -11.81787 -11.71953 -11.41075 -11.04936 -10.84906 -10.64565 -10.46646 -10.09498 -9.92876 -9.26855 -8.01761 -5.36169 1.31907 1.43320 1.49812 1.62146 1.72217 2.20410 2.35509 2.48609 2.94235 3.28389 3.44113 3.53395 3.61900 3.69027 3.73772 3.80606 3.92187 3.94407 4.06790 4.08988 4.21894 4.25376 4.29449 4.40769 4.56143 4.63564 4.65757 4.70359 4.71354 4.77688 4.81449 4.83913 4.90488 4.98730 5.05418 5.09082 5.09895 5.11124 5.11635 5.17431 5.35802 5.59507 5.75297 5.78615 6.20048 6.23539 6.43472 6.62593 7.08119 7.20029 7.35964 7.80162 8.07099 9.20472 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008722 B = 0.004618 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3209.516253 B = 6061.333809 C = 8295.957073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.987 5.987 2 C -0.065 4.065 3 Si 0.965 3.035 4 H -0.282 1.282 5 H -0.295 1.295 6 H -0.237 1.237 7 C -0.235 4.235 8 H 0.037 0.963 9 N -0.739 5.739 10 C 0.149 3.851 11 C 0.180 3.820 12 N -0.710 5.710 13 C 0.510 3.490 14 O -0.566 6.566 15 C -0.148 4.148 16 C 0.153 3.847 17 H 0.056 0.944 18 C -0.127 4.127 19 C -0.121 4.121 20 C -0.128 4.128 21 C 0.509 3.491 22 O -0.620 6.620 23 N -0.702 5.702 24 C -0.157 4.157 25 C 0.073 3.927 26 O -0.394 6.394 27 C 0.064 3.936 28 C -0.154 4.154 29 H 0.258 0.742 30 H 0.369 0.631 31 H 0.016 0.984 32 H 0.026 0.974 33 H 0.411 0.589 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.057 0.943 39 H 0.107 0.893 40 H 0.100 0.900 41 H 0.122 0.878 42 H 0.393 0.607 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.101 0.899 46 H 0.057 0.943 47 H 0.115 0.885 48 H 0.069 0.931 49 H 0.081 0.919 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.443 4.193 11.356 22.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.638 5.638 2 C -0.256 4.256 3 Si 0.791 3.209 4 H -0.208 1.208 5 H -0.222 1.222 6 H -0.161 1.161 7 C -0.366 4.366 8 H 0.056 0.944 9 N -0.386 5.386 10 C 0.022 3.978 11 C 0.093 3.907 12 N -0.363 5.363 13 C 0.298 3.702 14 O -0.445 6.445 15 C -0.189 4.189 16 C 0.048 3.952 17 H 0.074 0.926 18 C -0.165 4.165 19 C -0.158 4.158 20 C -0.168 4.168 21 C 0.298 3.702 22 O -0.503 6.503 23 N -0.352 5.352 24 C -0.196 4.196 25 C -0.003 4.003 26 O -0.313 6.313 27 C -0.013 4.013 28 C -0.192 4.192 29 H 0.067 0.933 30 H 0.204 0.796 31 H 0.034 0.966 32 H 0.044 0.956 33 H 0.248 0.752 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.115 0.885 37 H 0.121 0.879 38 H 0.076 0.924 39 H 0.126 0.874 40 H 0.119 0.881 41 H 0.140 0.860 42 H 0.228 0.772 43 H 0.096 0.904 44 H 0.091 0.909 45 H 0.119 0.881 46 H 0.075 0.925 47 H 0.133 0.867 48 H 0.087 0.913 49 H 0.100 0.900 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 19.238 2.877 11.386 22.539 hybrid contribution -0.671 0.612 -0.700 1.147 sum 18.567 3.489 10.686 21.705 Atomic orbital electron populations 1.69929 1.07565 1.26805 1.59454 1.25615 0.96140 1.01609 1.02245 0.85284 0.78993 0.78633 0.78009 1.20847 1.22164 1.16097 1.18910 0.83125 0.92981 1.41586 0.94449 1.42381 1.02243 1.04809 1.89178 1.21042 0.90677 0.88548 0.97571 1.20385 0.93263 0.93217 0.83824 1.45917 1.59287 1.25334 1.05789 1.21126 0.76286 0.86402 0.86360 1.90672 1.45134 1.21798 1.86848 1.22184 1.05991 1.00556 0.90124 1.20824 0.93924 0.84478 0.96015 0.92588 1.21999 1.04861 0.97976 0.91632 1.21673 0.96884 0.97216 1.00066 1.21683 1.01538 1.00583 0.92952 1.21005 0.78320 0.83842 0.87068 1.90715 1.44134 1.27137 1.88362 1.45777 1.52487 1.28809 1.08095 1.22500 0.96700 0.96825 1.03599 1.22525 0.92664 0.95168 0.89973 1.87919 1.63982 1.27591 1.51819 1.22725 0.90026 0.85081 1.03452 1.22444 0.97834 1.00846 0.98053 0.93333 0.79565 0.96587 0.95566 0.75236 0.85235 0.85288 0.88473 0.87927 0.92378 0.87417 0.88147 0.86005 0.77177 0.90412 0.90879 0.88080 0.92455 0.86738 0.91317 0.90029 0.90003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -62.85 13.97 21.65 0.30 -62.55 16 2 C -0.07 -3.75 5.50 84.86 0.47 -3.28 16 3 Si 0.96 42.28 27.94 68.60 1.92 44.20 16 4 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 5 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 6 H -0.24 -8.48 6.24 99.48 0.62 -7.86 16 7 C -0.23 -13.45 10.47 84.03 0.88 -12.57 16 8 H 0.04 2.46 8.06 -2.91 -0.02 2.44 16 9 N -0.74 -33.08 4.99 -343.44 -1.71 -34.80 16 10 C 0.15 5.89 4.81 86.38 0.42 6.30 16 11 C 0.18 4.94 0.32 3.72 0.00 4.94 16 12 N -0.71 -16.17 3.75 -422.39 -1.59 -17.75 16 13 C 0.51 13.11 6.91 87.66 0.61 13.71 16 14 O -0.57 -19.49 10.89 -3.04 -0.03 -19.52 16 15 C -0.15 -2.48 5.34 29.85 0.16 -2.32 16 16 C 0.15 3.01 2.64 45.11 0.12 3.13 16 17 H 0.06 1.49 7.91 -2.39 -0.02 1.47 16 18 C -0.13 -1.50 5.30 30.68 0.16 -1.34 16 19 C -0.12 -1.48 6.03 30.73 0.19 -1.29 16 20 C -0.13 -2.00 6.03 29.71 0.18 -1.82 16 21 C 0.51 13.00 7.71 87.71 0.68 13.67 16 22 O -0.62 -21.83 17.78 -3.02 -0.05 -21.88 16 23 N -0.70 -16.94 5.01 -446.63 -2.24 -19.17 16 24 C -0.16 -4.10 4.83 30.75 0.15 -3.95 16 25 C 0.07 1.53 6.68 72.08 0.48 2.01 16 26 O -0.39 -8.55 10.77 -148.98 -1.60 -10.15 16 27 C 0.06 1.10 6.67 72.01 0.48 1.58 16 28 C -0.15 -3.55 4.82 30.68 0.15 -3.40 16 29 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 30 H 0.37 14.79 4.28 -92.71 -0.40 14.39 16 31 H 0.02 0.68 8.14 -2.38 -0.02 0.66 16 32 H 0.03 1.21 6.27 -2.39 -0.01 1.20 16 33 H 0.41 6.55 7.42 -92.71 -0.69 5.86 16 34 H 0.13 1.33 8.14 -2.38 -0.02 1.31 16 35 H 0.13 1.78 8.13 -2.39 -0.02 1.76 16 36 H 0.10 0.75 8.11 -2.39 -0.02 0.73 16 37 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 38 H 0.06 0.91 8.13 -2.39 -0.02 0.89 16 39 H 0.11 0.76 8.14 -2.38 -0.02 0.74 16 40 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.12 1.33 8.14 -2.39 -0.02 1.32 16 42 H 0.39 11.10 7.03 -92.71 -0.65 10.45 16 43 H 0.08 2.35 6.23 -2.38 -0.01 2.34 16 44 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 46 H 0.06 1.08 7.75 -2.39 -0.02 1.07 16 47 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 48 H 0.07 0.90 7.02 -2.39 -0.02 0.88 16 49 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 50 H 0.08 1.92 7.22 -2.39 -0.02 1.91 16 Total: -1.00 -83.22 382.88 -0.75 -83.97 By element: Atomic # 1 Polarization: 43.13 SS G_CDS: -0.85 Total: 42.28 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: 5.11 Total: 15.39 kcal Atomic # 7 Polarization: -129.04 SS G_CDS: -5.24 Total: -134.27 kcal Atomic # 8 Polarization: -49.87 SS G_CDS: -1.69 Total: -51.56 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 1.92 Total: 44.20 kcal Total: -83.22 -0.75 -83.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717265676.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.594 kcal (2) G-P(sol) polarization free energy of solvation -83.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds