Wall clock time and date at job start Sat Apr 11 2020 05:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86806 * 119.99953 * 2 1 4 4 H 1.48503 * 109.47107 * 240.00295 * 3 2 1 5 5 H 1.48506 * 109.46866 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47355 * 120.00225 * 3 2 1 7 7 C 1.38807 * 120.00376 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00146 * 194.55571 * 7 2 1 9 9 N 1.36937 * 119.99564 * 14.55213 * 7 2 1 10 10 C 1.47605 * 118.64691 * 27.77365 * 9 7 2 11 11 C 1.53937 * 112.14718 * 137.85771 * 10 9 7 12 12 C 1.50875 * 110.09800 * 319.44548 * 11 10 9 13 13 C 1.52558 * 109.35233 * 91.88339 * 12 11 10 14 14 C 1.47046 * 114.29431 * 274.93922 * 13 12 11 15 15 C 1.44586 * 118.63929 * 207.75011 * 9 7 2 16 16 H 1.08999 * 109.44924 * 150.70749 * 15 9 7 17 17 C 1.52999 * 109.44848 * 30.75758 * 15 9 7 18 18 N 1.46503 * 109.47120 * 54.94958 * 17 15 9 19 19 C 1.34769 * 119.99916 * 180.02562 * 18 17 15 20 20 O 1.21285 * 119.99865 * 359.97438 * 19 18 17 21 21 C 1.50700 * 120.00219 * 179.97438 * 19 18 17 22 22 N 1.46498 * 109.47483 * 179.97438 * 21 19 18 23 23 C 1.46085 * 118.72801 * 89.99808 * 22 21 19 24 24 C 1.53027 * 109.92494 * 161.61950 * 23 22 21 25 25 O 1.43250 * 108.66551 * 49.16362 * 24 23 22 26 26 C 1.42969 * 112.98691 * 291.63728 * 25 24 23 27 27 C 1.33872 * 118.72620 * 269.73097 * 22 21 19 28 28 O 1.21280 * 118.83792 * 1.90484 * 27 22 21 29 29 H 0.97006 * 120.00065 * 359.97438 * 1 2 3 30 30 H 1.08995 * 108.94678 * 258.55433 * 10 9 7 31 31 H 1.09003 * 108.94386 * 17.26482 * 10 9 7 32 32 H 1.09005 * 109.36841 * 79.63219 * 11 10 9 33 33 H 1.09008 * 109.36990 * 199.37459 * 11 10 9 34 34 H 1.09001 * 109.49486 * 211.85300 * 12 11 10 35 35 H 1.09007 * 109.49208 * 331.92158 * 12 11 10 36 36 H 1.08999 * 108.51335 * 36.23408 * 13 12 11 37 37 H 1.09006 * 108.51000 * 153.87664 * 13 12 11 38 38 H 1.09004 * 109.37498 * 302.59351 * 14 13 12 39 39 H 1.09004 * 109.28607 * 183.11901 * 14 13 12 40 40 H 1.08995 * 109.47126 * 294.94340 * 17 15 9 41 41 H 1.09001 * 109.46652 * 174.94499 * 17 15 9 42 42 H 0.97006 * 119.99524 * 359.97438 * 18 17 15 43 43 H 1.09000 * 109.46978 * 300.00257 * 21 19 18 44 44 H 1.09006 * 109.46987 * 59.99262 * 21 19 18 45 45 H 1.08994 * 109.39687 * 281.75577 * 23 22 21 46 46 H 1.09000 * 109.39705 * 41.57722 * 23 22 21 47 47 H 1.08996 * 109.60844 * 168.91583 * 24 23 22 48 48 H 1.08995 * 109.60368 * 289.24961 * 24 23 22 49 49 H 1.08997 * 109.41240 * 169.70312 * 26 25 24 50 50 H 1.08997 * 109.41393 * 289.56750 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2126 5 1 1.2850 2.7465 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0642 -1.2171 0.2345 9 7 1.3585 -2.3688 -0.2990 10 6 0.1764 -2.3133 -1.1812 11 6 0.1648 -3.4594 -2.2089 12 6 1.5560 -3.6880 -2.7461 13 6 2.2570 -4.7465 -1.9002 14 6 2.9094 -4.2208 -0.6918 15 6 1.8571 -3.6043 0.2626 16 1 1.0310 -4.3035 0.3921 17 6 2.5037 -3.3224 1.6202 18 7 1.5432 -2.6320 2.4846 19 6 1.8954 -2.2804 3.7371 20 8 3.0073 -2.5359 4.1487 21 6 0.9077 -1.5697 4.6261 22 7 1.5268 -1.2999 5.9262 23 6 2.2445 -0.0415 6.1144 24 6 2.4079 0.2472 7.6083 25 8 2.9192 -0.9275 8.2491 26 6 1.9795 -2.0048 8.2721 27 6 1.4082 -2.2136 6.8973 28 8 0.8230 -3.2486 6.6584 29 1 -0.4850 0.8401 0.0004 30 1 -0.7242 -2.3763 -0.5705 31 1 0.1766 -1.3622 -1.7138 32 1 -0.1918 -4.3711 -1.7296 33 1 -0.5006 -3.1999 -3.0324 34 1 1.4953 -4.0297 -3.7794 35 1 2.1201 -2.7562 -2.7034 36 1 1.5214 -5.4930 -1.6005 37 1 3.0135 -5.2351 -2.5144 38 1 3.6320 -3.4553 -0.9750 39 1 3.4285 -5.0319 -0.1811 40 1 3.3835 -2.6944 1.4802 41 1 2.7991 -4.2634 2.0843 42 1 0.6541 -2.4274 2.1552 43 1 0.6122 -0.6289 4.1617 44 1 0.0277 -2.1976 4.7664 45 1 3.2280 -0.1127 5.6499 46 1 1.6826 0.7688 5.6499 47 1 3.1059 1.0727 7.7471 48 1 1.4411 0.5096 8.0379 49 1 2.4803 -2.9153 8.6012 50 1 1.1712 -1.7657 8.9631 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717537262.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:18 Heat of formation + Delta-G solvation = -105.622968 kcal Electronic energy + Delta-G solvation = -31712.016381 eV Core-core repulsion = 27546.359534 eV Total energy + Delta-G solvation = -4165.656847 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.90447 -40.53137 -39.51457 -38.71982 -36.48329 -35.92182 -35.21321 -33.33134 -32.46979 -31.41833 -30.38843 -28.62911 -27.53621 -26.53068 -25.20210 -24.85657 -23.59668 -21.70360 -21.10418 -20.79576 -20.09373 -18.78773 -18.64269 -18.18137 -17.78325 -17.26151 -16.90877 -16.54782 -16.46540 -16.19123 -15.98767 -15.70882 -15.59921 -15.22848 -15.16933 -14.75006 -14.51728 -14.38037 -14.30986 -13.91304 -13.71879 -13.41597 -13.31223 -13.03661 -12.86274 -12.80429 -12.75972 -12.68683 -12.39175 -12.28571 -11.99542 -11.63433 -11.55502 -11.41763 -11.33801 -11.21639 -11.19549 -10.92864 -10.53488 -10.34253 -9.87522 -9.83148 -8.54674 -7.76849 -5.21078 1.29425 1.43760 1.48621 1.52381 1.65611 1.70658 2.49634 2.56394 2.78713 3.26763 3.37220 3.59065 3.78184 3.87244 4.00081 4.02993 4.07254 4.14450 4.19662 4.26119 4.30087 4.36078 4.42404 4.45006 4.48193 4.59720 4.65311 4.70961 4.79149 4.81062 4.99910 5.05413 5.05645 5.12832 5.24281 5.25568 5.36933 5.41530 5.54222 5.63684 5.68716 5.74948 5.76945 5.80173 5.91301 6.24249 6.48890 6.69493 6.88698 7.28178 7.34204 8.01074 8.40702 9.26519 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013531 B = 0.003638 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.761321 B = 7694.988722 C = 8911.241199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.024 4.024 3 Si 0.934 3.066 4 H -0.292 1.292 5 H -0.293 1.293 6 H -0.287 1.287 7 C -0.235 4.235 8 H 0.046 0.954 9 N -0.587 5.587 10 C 0.190 3.810 11 C -0.134 4.134 12 C -0.103 4.103 13 C -0.100 4.100 14 C -0.128 4.128 15 C 0.175 3.825 16 H 0.054 0.946 17 C 0.137 3.863 18 N -0.687 5.687 19 C 0.492 3.508 20 O -0.592 6.592 21 C 0.096 3.904 22 N -0.585 5.585 23 C 0.070 3.930 24 C 0.049 3.951 25 O -0.384 6.384 26 C 0.061 3.939 27 C 0.480 3.520 28 O -0.585 6.585 29 H 0.247 0.753 30 H 0.003 0.997 31 H 0.041 0.959 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.042 0.958 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.042 0.958 39 H 0.069 0.931 40 H 0.041 0.959 41 H 0.055 0.945 42 H 0.410 0.590 43 H 0.127 0.873 44 H 0.113 0.887 45 H 0.057 0.943 46 H 0.110 0.890 47 H 0.142 0.858 48 H 0.090 0.910 49 H 0.135 0.865 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.097 -1.505 9.114 9.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.221 4.221 3 Si 0.765 3.235 4 H -0.219 1.219 5 H -0.219 1.219 6 H -0.214 1.214 7 C -0.365 4.365 8 H 0.063 0.937 9 N -0.310 5.310 10 C 0.066 3.934 11 C -0.173 4.173 12 C -0.140 4.140 13 C -0.138 4.138 14 C -0.169 4.169 15 C 0.067 3.933 16 H 0.072 0.928 17 C 0.012 3.988 18 N -0.336 5.336 19 C 0.278 3.722 20 O -0.474 6.474 21 C -0.031 4.031 22 N -0.316 5.316 23 C -0.052 4.052 24 C -0.028 4.028 25 O -0.302 6.302 26 C -0.018 4.018 27 C 0.269 3.731 28 O -0.466 6.466 29 H 0.057 0.943 30 H 0.022 0.978 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.061 0.939 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.061 0.939 39 H 0.087 0.913 40 H 0.060 0.940 41 H 0.074 0.926 42 H 0.246 0.754 43 H 0.145 0.855 44 H 0.131 0.869 45 H 0.075 0.925 46 H 0.128 0.872 47 H 0.160 0.840 48 H 0.108 0.892 49 H 0.153 0.847 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.443 -2.083 9.362 9.601 hybrid contribution -0.030 1.297 -0.798 1.523 sum 0.413 -0.786 8.564 8.610 Atomic orbital electron populations 1.70115 1.05388 1.25174 1.55788 1.25261 0.95636 0.99379 1.01815 0.85881 0.77973 0.82143 0.77516 1.21924 1.21894 1.21389 1.18927 0.91254 0.85640 1.40715 0.93662 1.43766 1.32366 1.01850 1.52997 1.20781 0.87145 0.95616 0.89879 1.21955 0.97199 0.99314 0.98798 1.20901 0.96006 0.98846 0.98273 1.20265 0.99687 0.97737 0.96095 1.21277 0.98568 0.99671 0.97356 1.20639 0.94671 0.88496 0.89519 0.92796 1.21391 0.92026 0.94820 0.90596 1.45681 1.17904 1.57796 1.12219 1.21399 0.88814 0.79121 0.82909 1.90607 1.23825 1.57583 1.75357 1.21352 0.95264 1.03013 0.83449 1.47217 1.53558 1.20057 1.10805 1.22488 0.97368 0.85016 1.00306 1.23241 1.02917 0.88390 0.88206 1.88187 1.40298 1.22851 1.78840 1.22860 0.95019 0.93270 0.90641 1.21812 0.79513 0.82594 0.89140 1.90702 1.45403 1.27409 1.83095 0.94313 0.97844 0.94090 0.92371 0.92023 0.91813 0.93892 0.92124 0.91990 0.93867 0.91287 0.94035 0.92648 0.75442 0.85515 0.86879 0.92474 0.87218 0.84006 0.89226 0.84712 0.85962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.18 11.03 21.65 0.24 -46.94 16 2 C -0.02 -1.22 4.89 84.86 0.41 -0.81 16 3 Si 0.93 42.36 29.58 68.60 2.03 44.38 16 4 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 5 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 6 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 7 C -0.23 -11.40 7.64 84.03 0.64 -10.75 16 8 H 0.05 2.35 6.72 -2.91 -0.02 2.33 16 9 N -0.59 -25.15 1.78 -674.25 -1.20 -26.34 16 10 C 0.19 8.11 4.66 86.48 0.40 8.51 16 11 C -0.13 -4.47 5.71 30.22 0.17 -4.30 16 12 C -0.10 -3.24 5.51 29.76 0.16 -3.08 16 13 C -0.10 -2.87 5.15 28.60 0.15 -2.72 16 14 C -0.13 -4.15 5.06 29.38 0.15 -4.00 16 15 C 0.17 6.46 2.19 45.99 0.10 6.56 16 16 H 0.05 1.93 8.07 -2.39 -0.02 1.91 16 17 C 0.14 5.37 4.52 86.38 0.39 5.77 16 18 N -0.69 -27.26 4.72 -463.07 -2.18 -29.45 16 19 C 0.49 19.76 7.89 87.66 0.69 20.45 16 20 O -0.59 -27.63 16.43 -3.05 -0.05 -27.68 16 21 C 0.10 3.09 5.77 85.63 0.49 3.59 16 22 N -0.59 -17.22 2.32 -828.98 -1.92 -19.15 16 23 C 0.07 1.59 6.67 86.47 0.58 2.17 16 24 C 0.05 0.76 6.89 71.99 0.50 1.25 16 25 O -0.38 -8.16 10.86 -148.98 -1.62 -9.78 16 26 C 0.06 1.28 6.99 71.12 0.50 1.78 16 27 C 0.48 14.60 7.58 87.68 0.66 15.27 16 28 O -0.59 -22.25 16.38 -3.03 -0.05 -22.30 16 29 H 0.25 12.67 8.31 -92.70 -0.77 11.90 16 30 H 0.00 0.16 8.02 -2.39 -0.02 0.14 16 31 H 0.04 2.01 6.40 -2.39 -0.02 1.99 16 32 H 0.06 1.80 7.32 -2.38 -0.02 1.78 16 33 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 34 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.04 1.63 7.48 -2.38 -0.02 1.61 16 36 H 0.06 1.61 7.36 -2.39 -0.02 1.59 16 37 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 38 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 39 H 0.07 1.96 8.11 -2.38 -0.02 1.94 16 40 H 0.04 1.84 6.83 -2.39 -0.02 1.82 16 41 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.41 16.50 8.08 -92.70 -0.75 15.76 16 43 H 0.13 3.64 7.93 -2.39 -0.02 3.62 16 44 H 0.11 3.60 7.28 -2.38 -0.02 3.58 16 45 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.11 1.97 7.99 -2.39 -0.02 1.95 16 47 H 0.14 1.45 8.14 -2.39 -0.02 1.43 16 48 H 0.09 0.97 8.10 -2.39 -0.02 0.95 16 49 H 0.14 2.66 8.14 -2.39 -0.02 2.64 16 50 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -67.75 388.81 1.44 -66.30 By element: Atomic # 1 Polarization: 31.08 SS G_CDS: 0.19 Total: 31.27 kcal Atomic # 6 Polarization: 33.67 SS G_CDS: 6.01 Total: 39.67 kcal Atomic # 7 Polarization: -116.81 SS G_CDS: -5.07 Total: -121.88 kcal Atomic # 8 Polarization: -58.04 SS G_CDS: -1.72 Total: -59.75 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.38 kcal Total: -67.75 1.44 -66.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717537262.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.318 kcal (2) G-P(sol) polarization free energy of solvation -67.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds