Wall clock time and date at job start Sat Apr 11 2020 05:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86799 * 119.99950 * 2 1 4 4 H 1.48493 * 109.47483 * 270.00079 * 3 2 1 5 5 H 1.48495 * 109.47285 * 30.00795 * 3 2 1 6 6 H 1.48504 * 109.46888 * 150.00299 * 3 2 1 7 7 C 1.38952 * 120.00198 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99951 * 359.97438 * 7 2 1 9 9 N 1.37090 * 120.00164 * 179.97438 * 7 2 1 10 10 C 1.34779 * 119.99855 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00462 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00032 * 180.02562 * 10 9 7 13 13 N 1.46903 * 109.47360 * 180.02562 * 12 10 9 14 14 C 1.46896 * 111.00088 * 179.97438 * 13 12 10 15 15 H 1.09008 * 109.47076 * 35.00048 * 14 13 12 16 16 C 1.52998 * 109.47168 * 275.00062 * 14 13 12 17 17 O 1.42901 * 109.46852 * 294.99841 * 16 14 13 18 18 C 1.53000 * 109.47082 * 154.99615 * 14 13 12 19 19 N 1.46495 * 109.47218 * 305.00667 * 18 14 13 20 20 C 1.34788 * 119.99805 * 180.02562 * 19 18 14 21 21 O 1.21608 * 120.00000 * 359.97438 * 20 19 18 22 22 C 1.47101 * 119.99714 * 179.97438 * 20 19 18 23 23 C 1.32997 * 119.99648 * 186.98410 * 22 20 19 24 24 C 1.51269 * 120.84982 * 12.17523 * 23 22 20 25 25 C 1.53668 * 108.30748 * 128.61925 * 24 23 22 26 26 C 1.52959 * 109.32084 * 54.86295 * 25 24 23 27 27 C 1.52960 * 109.81783 * 296.27070 * 26 25 24 28 28 C 1.51267 * 120.84781 * 192.46377 * 23 22 20 29 29 H 0.97003 * 120.00122 * 359.97438 * 1 2 3 30 30 H 0.96995 * 120.00511 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.47231 * 59.99957 * 12 10 9 32 32 H 1.09002 * 109.47234 * 300.00508 * 12 10 9 33 33 H 1.00900 * 110.99959 * 56.04686 * 13 12 10 34 34 H 1.09000 * 109.47334 * 55.00108 * 16 14 13 35 35 H 1.08999 * 109.46872 * 175.00206 * 16 14 13 36 36 H 0.96701 * 113.99287 * 180.02562 * 17 16 14 37 37 H 1.09000 * 109.47098 * 184.99798 * 18 14 13 38 38 H 1.09004 * 109.46890 * 65.00695 * 18 14 13 39 39 H 0.96992 * 120.00337 * 359.97438 * 19 18 14 40 40 H 1.07997 * 120.00318 * 6.69799 * 22 20 19 41 41 H 1.08993 * 109.63057 * 248.39385 * 24 23 22 42 42 H 1.08999 * 109.62332 * 8.96840 * 24 23 22 43 43 H 1.08996 * 109.63208 * 294.84428 * 25 24 23 44 44 H 1.09000 * 109.42698 * 174.75463 * 25 24 23 45 45 H 1.08995 * 109.41525 * 176.16464 * 26 25 24 46 46 H 1.09004 * 109.41656 * 56.37306 * 26 25 24 47 47 H 1.08998 * 109.48131 * 303.61484 * 27 26 25 48 48 H 1.09003 * 109.48240 * 183.58140 * 27 26 25 49 49 H 1.09001 * 109.62695 * 351.03484 * 28 23 22 50 50 H 1.08998 * 109.62927 * 111.60809 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4456 2.6526 0.7002 6 1 3.5456 1.4401 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1387 -0.0005 9 7 3.3798 -1.2033 -0.0011 10 6 4.0536 -2.3706 -0.0011 11 8 3.4472 -3.4210 -0.0011 12 6 5.5606 -2.3706 -0.0011 13 7 6.0503 -3.7556 -0.0017 14 6 7.5188 -3.7948 -0.0023 15 1 7.9047 -2.9631 0.5873 16 6 8.0313 -3.6823 -1.4395 17 8 7.6222 -4.8323 -2.1825 18 6 7.9940 -5.1154 0.6068 19 7 7.4057 -5.2786 1.9385 20 6 7.6858 -6.3762 2.6691 21 8 8.4264 -7.2311 2.2225 22 6 7.0956 -6.5398 4.0065 23 6 7.4779 -7.5495 4.7830 24 6 8.6975 -8.3751 4.4376 25 6 9.6063 -8.4348 5.6752 26 6 8.8052 -8.9629 6.8664 27 6 7.6786 -7.9861 7.2076 28 6 6.7006 -7.9059 6.0308 29 1 -0.4850 0.8401 0.0004 30 1 3.8648 -0.3634 -0.0014 31 1 5.9240 -1.8568 0.8889 32 1 5.9240 -1.8567 -0.8910 33 1 5.6748 -4.2715 -0.7833 34 1 7.6203 -2.7853 -1.9027 35 1 9.1196 -3.6220 -1.4334 36 1 7.9132 -4.8287 -3.1046 37 1 9.0809 -5.1078 0.6880 38 1 7.6832 -5.9426 -0.0315 39 1 6.8153 -4.5966 2.2948 40 1 6.3552 -5.8373 4.3596 41 1 8.3902 -9.3823 4.1565 42 1 9.2331 -7.9086 3.6108 43 1 9.9811 -7.4369 5.9029 44 1 10.4453 -9.1019 5.4771 45 1 9.4646 -9.0704 7.7276 46 1 8.3788 -9.9339 6.6145 47 1 8.0990 -6.9989 7.3991 48 1 7.1512 -8.3352 8.0954 49 1 5.9527 -7.1378 6.2281 50 1 6.2116 -8.8705 5.8946 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717761703.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:26 Heat of formation + Delta-G solvation = -111.591427 kcal Electronic energy + Delta-G solvation = -29272.621164 eV Core-core repulsion = 25106.705506 eV Total energy + Delta-G solvation = -4165.915658 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.00515 -38.89025 -38.14348 -37.63610 -35.49821 -34.17205 -33.66136 -32.81416 -31.69821 -31.14328 -30.26481 -27.44245 -26.36880 -25.38619 -23.75232 -23.12654 -21.77308 -20.95016 -20.36872 -19.45821 -18.75245 -18.37856 -17.66120 -16.82032 -16.49506 -15.79686 -15.65231 -15.39958 -15.09236 -14.93192 -14.72066 -14.54207 -14.32544 -14.07980 -13.92611 -13.76630 -13.50743 -13.25351 -13.05497 -12.79169 -12.55104 -12.47868 -12.35643 -12.10785 -12.01661 -11.78953 -11.69362 -11.36701 -11.27400 -11.19788 -11.11374 -10.88531 -10.63150 -10.49741 -10.24340 -10.00291 -9.60375 -9.40259 -9.04020 -8.75090 -8.64143 -8.24463 -8.18981 -6.33632 -3.85209 1.34477 2.98823 3.03108 3.12005 3.31074 3.40633 3.70238 3.85851 4.06937 4.21059 4.49672 4.51911 4.67944 4.69310 4.77439 4.84422 4.89879 4.96352 5.11594 5.12202 5.16428 5.20511 5.23780 5.27869 5.38155 5.38676 5.43760 5.55851 5.64938 5.65380 5.74533 5.78533 5.78712 5.83234 5.87158 5.88481 6.03782 6.07380 6.15748 6.44596 6.53020 6.71855 7.00743 7.38946 7.54395 7.56710 7.73478 8.11827 8.41021 8.56806 8.92466 9.39438 9.79622 10.79481 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011442 B = 0.002296 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.581433 B =12194.043917 C =13989.001648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.041 3.959 3 Si 0.880 3.120 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.270 1.270 7 C -0.305 4.305 8 H 0.120 0.880 9 N -0.591 5.591 10 C 0.449 3.551 11 O -0.561 6.561 12 C 0.045 3.955 13 N -0.659 5.659 14 C 0.075 3.925 15 H 0.094 0.906 16 C 0.046 3.954 17 O -0.564 6.564 18 C 0.138 3.862 19 N -0.708 5.708 20 C 0.547 3.453 21 O -0.551 6.551 22 C -0.227 4.227 23 C -0.026 4.026 24 C -0.120 4.120 25 C -0.117 4.117 26 C -0.124 4.124 27 C -0.117 4.117 28 C -0.094 4.094 29 H 0.273 0.727 30 H 0.370 0.630 31 H 0.087 0.913 32 H 0.044 0.956 33 H 0.365 0.635 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.380 0.620 37 H 0.064 0.936 38 H 0.078 0.922 39 H 0.409 0.591 40 H 0.127 0.873 41 H 0.074 0.926 42 H 0.122 0.878 43 H 0.060 0.940 44 H 0.064 0.936 45 H 0.060 0.940 46 H 0.062 0.938 47 H 0.064 0.936 48 H 0.065 0.935 49 H 0.075 0.925 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.141 -8.922 7.712 25.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.162 4.162 3 Si 0.707 3.293 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.433 4.433 8 H 0.137 0.863 9 N -0.230 5.230 10 C 0.235 3.765 11 O -0.443 6.443 12 C -0.088 4.088 13 N -0.293 5.293 14 C -0.037 4.037 15 H 0.112 0.888 16 C -0.034 4.034 17 O -0.370 6.370 18 C 0.013 3.987 19 N -0.358 5.358 20 C 0.337 3.663 21 O -0.433 6.433 22 C -0.248 4.248 23 C -0.028 4.028 24 C -0.157 4.157 25 C -0.154 4.154 26 C -0.161 4.161 27 C -0.154 4.154 28 C -0.131 4.131 29 H 0.084 0.916 30 H 0.202 0.798 31 H 0.105 0.895 32 H 0.062 0.938 33 H 0.186 0.814 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.228 0.772 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.244 0.756 40 H 0.145 0.855 41 H 0.092 0.908 42 H 0.139 0.861 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.082 0.918 48 H 0.084 0.916 49 H 0.094 0.906 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 21.688 -10.320 8.627 25.521 hybrid contribution 0.547 2.443 -1.290 2.816 sum 22.235 -7.877 7.337 24.704 Atomic orbital electron populations 1.69619 1.05642 1.27497 1.49307 1.25046 0.95499 0.97973 0.97697 0.86667 0.79769 0.84083 0.78809 1.19711 1.20169 1.19517 1.19428 0.79229 0.96628 1.48065 0.86276 1.42202 1.07535 1.06112 1.67176 1.19671 0.88115 0.84594 0.84153 1.90588 1.69357 1.30874 1.53447 1.21795 0.95326 0.90576 1.01112 1.60131 1.04412 1.12361 1.52387 1.22000 0.89731 0.98474 0.93457 0.88836 1.22837 0.98565 0.88480 0.93507 1.86506 1.80210 1.43138 1.27097 1.21163 0.96579 0.97441 0.83493 1.45736 1.49887 1.22708 1.17471 1.18523 0.80536 0.81296 0.85947 1.90582 1.38222 1.42065 1.72400 1.22358 1.05710 1.01743 0.94963 1.22658 0.93674 0.92779 0.93668 1.21670 0.94168 1.00338 0.99492 1.21675 0.97923 1.01146 0.94663 1.21568 0.97346 0.99024 0.98169 1.21570 0.96490 1.00067 0.97301 1.20973 0.97156 1.02624 0.92372 0.91599 0.79762 0.89499 0.93840 0.81360 0.93110 0.93064 0.77249 0.91745 0.90341 0.75566 0.85507 0.90803 0.86092 0.92142 0.91757 0.92123 0.91885 0.91763 0.91621 0.90635 0.89805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.51 13.96 55.50 0.77 -24.74 16 2 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 3 Si 0.88 18.98 27.74 -169.99 -4.71 14.27 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.27 -5.25 6.52 56.52 0.37 -4.88 16 7 C -0.30 -8.50 10.16 -14.94 -0.15 -8.65 16 8 H 0.12 3.82 7.39 -52.49 -0.39 3.44 16 9 N -0.59 -13.67 5.09 -10.96 -0.06 -13.72 16 10 C 0.45 9.84 7.82 -10.98 -0.09 9.75 16 11 O -0.56 -14.83 15.78 5.55 0.09 -14.74 16 12 C 0.04 0.68 5.96 -4.97 -0.03 0.65 16 13 N -0.66 -9.56 5.32 -107.99 -0.57 -10.13 16 14 C 0.07 0.80 2.57 -67.72 -0.17 0.63 16 15 H 0.09 0.84 7.80 -51.92 -0.41 0.44 16 16 C 0.05 0.42 6.72 37.16 0.25 0.67 16 17 O -0.56 -5.81 12.05 -35.23 -0.42 -6.23 16 18 C 0.14 1.67 5.26 -4.04 -0.02 1.65 16 19 N -0.71 -8.97 5.38 -61.49 -0.33 -9.30 16 20 C 0.55 7.59 7.62 -12.66 -0.10 7.49 16 21 O -0.55 -8.92 13.22 5.27 0.07 -8.85 16 22 C -0.23 -2.68 9.65 -37.81 -0.36 -3.04 16 23 C -0.03 -0.28 5.38 -100.61 -0.54 -0.82 16 24 C -0.12 -1.31 5.32 -27.26 -0.14 -1.45 16 25 C -0.12 -1.00 5.95 -26.40 -0.16 -1.16 16 26 C -0.12 -0.91 5.81 -26.77 -0.16 -1.06 16 27 C -0.12 -0.85 5.94 -26.63 -0.16 -1.01 16 28 C -0.09 -0.80 6.04 -27.49 -0.17 -0.97 16 29 H 0.27 7.30 8.31 -40.82 -0.34 6.97 16 30 H 0.37 7.45 5.76 -40.82 -0.24 7.21 16 31 H 0.09 1.13 8.06 -51.93 -0.42 0.71 16 32 H 0.04 0.57 7.36 -51.93 -0.38 0.19 16 33 H 0.36 6.11 7.64 -39.29 -0.30 5.81 16 34 H 0.05 0.45 7.35 -51.93 -0.38 0.07 16 35 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.38 2.26 9.12 45.56 0.42 2.68 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.08 1.14 7.39 -51.93 -0.38 0.76 16 39 H 0.41 4.96 8.12 -40.82 -0.33 4.62 16 40 H 0.13 1.32 7.96 -52.49 -0.42 0.90 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.12 1.60 4.79 -52.87 -0.25 1.35 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 46 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.07 0.60 7.92 -51.93 -0.41 0.19 16 50 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 401.35 15.07 6.05 6.05 Total: -1.00 -34.59 401.35 -8.50 -43.09 By element: Atomic # 1 Polarization: 27.91 SS G_CDS: -7.29 Total: 20.62 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -2.09 Total: 3.68 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: -0.19 Total: -57.89 kcal Atomic # 8 Polarization: -29.56 SS G_CDS: -0.27 Total: -29.82 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -4.71 Total: 14.27 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.59 -8.50 -43.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717761703.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.502 kcal (2) G-P(sol) polarization free energy of solvation -34.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds