Wall clock time and date at job start Sat Apr 11 2020 05:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86799 * 119.99950 * 2 1 4 4 H 1.48493 * 109.47483 * 270.00079 * 3 2 1 5 5 H 1.48495 * 109.47285 * 30.00795 * 3 2 1 6 6 H 1.48504 * 109.46888 * 150.00299 * 3 2 1 7 7 C 1.38952 * 120.00198 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99951 * 359.97438 * 7 2 1 9 9 N 1.37090 * 120.00164 * 179.97438 * 7 2 1 10 10 C 1.34779 * 119.99855 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00462 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00032 * 180.02562 * 10 9 7 13 13 N 1.46903 * 109.47360 * 180.02562 * 12 10 9 14 14 C 1.46896 * 111.00088 * 179.97438 * 13 12 10 15 15 H 1.09008 * 109.47076 * 35.00048 * 14 13 12 16 16 C 1.52998 * 109.47168 * 275.00062 * 14 13 12 17 17 O 1.42901 * 109.46852 * 294.99841 * 16 14 13 18 18 C 1.53000 * 109.47082 * 154.99615 * 14 13 12 19 19 N 1.46495 * 109.47218 * 305.00667 * 18 14 13 20 20 C 1.34788 * 119.99805 * 180.02562 * 19 18 14 21 21 O 1.21608 * 120.00000 * 359.97438 * 20 19 18 22 22 C 1.47101 * 119.99714 * 179.97438 * 20 19 18 23 23 C 1.32997 * 119.99648 * 186.98410 * 22 20 19 24 24 C 1.51269 * 120.84982 * 12.17523 * 23 22 20 25 25 C 1.53668 * 108.30748 * 128.61925 * 24 23 22 26 26 C 1.52959 * 109.32084 * 54.86295 * 25 24 23 27 27 C 1.52960 * 109.81783 * 296.27070 * 26 25 24 28 28 C 1.51267 * 120.84781 * 192.46377 * 23 22 20 29 29 H 0.97003 * 120.00122 * 359.97438 * 1 2 3 30 30 H 0.96995 * 120.00511 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.47231 * 59.99957 * 12 10 9 32 32 H 1.09002 * 109.47234 * 300.00508 * 12 10 9 33 33 H 1.00900 * 110.99959 * 56.04686 * 13 12 10 34 34 H 1.09000 * 109.47334 * 55.00108 * 16 14 13 35 35 H 1.08999 * 109.46872 * 175.00206 * 16 14 13 36 36 H 0.96701 * 113.99287 * 180.02562 * 17 16 14 37 37 H 1.09000 * 109.47098 * 184.99798 * 18 14 13 38 38 H 1.09004 * 109.46890 * 65.00695 * 18 14 13 39 39 H 0.96992 * 120.00337 * 359.97438 * 19 18 14 40 40 H 1.07997 * 120.00318 * 6.69799 * 22 20 19 41 41 H 1.08993 * 109.63057 * 248.39385 * 24 23 22 42 42 H 1.08999 * 109.62332 * 8.96840 * 24 23 22 43 43 H 1.08996 * 109.63208 * 294.84428 * 25 24 23 44 44 H 1.09000 * 109.42698 * 174.75463 * 25 24 23 45 45 H 1.08995 * 109.41525 * 176.16464 * 26 25 24 46 46 H 1.09004 * 109.41656 * 56.37306 * 26 25 24 47 47 H 1.08998 * 109.48131 * 303.61484 * 27 26 25 48 48 H 1.09003 * 109.48240 * 183.58140 * 27 26 25 49 49 H 1.09001 * 109.62695 * 351.03484 * 28 23 22 50 50 H 1.08998 * 109.62927 * 111.60809 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4456 2.6526 0.7002 6 1 3.5456 1.4401 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1387 -0.0005 9 7 3.3798 -1.2033 -0.0011 10 6 4.0536 -2.3706 -0.0011 11 8 3.4472 -3.4210 -0.0011 12 6 5.5606 -2.3706 -0.0011 13 7 6.0503 -3.7556 -0.0017 14 6 7.5188 -3.7948 -0.0023 15 1 7.9047 -2.9631 0.5873 16 6 8.0313 -3.6823 -1.4395 17 8 7.6222 -4.8323 -2.1825 18 6 7.9940 -5.1154 0.6068 19 7 7.4057 -5.2786 1.9385 20 6 7.6858 -6.3762 2.6691 21 8 8.4264 -7.2311 2.2225 22 6 7.0956 -6.5398 4.0065 23 6 7.4779 -7.5495 4.7830 24 6 8.6975 -8.3751 4.4376 25 6 9.6063 -8.4348 5.6752 26 6 8.8052 -8.9629 6.8664 27 6 7.6786 -7.9861 7.2076 28 6 6.7006 -7.9059 6.0308 29 1 -0.4850 0.8401 0.0004 30 1 3.8648 -0.3634 -0.0014 31 1 5.9240 -1.8568 0.8889 32 1 5.9240 -1.8567 -0.8910 33 1 5.6748 -4.2715 -0.7833 34 1 7.6203 -2.7853 -1.9027 35 1 9.1196 -3.6220 -1.4334 36 1 7.9132 -4.8287 -3.1046 37 1 9.0809 -5.1078 0.6880 38 1 7.6832 -5.9426 -0.0315 39 1 6.8153 -4.5966 2.2948 40 1 6.3552 -5.8373 4.3596 41 1 8.3902 -9.3823 4.1565 42 1 9.2331 -7.9086 3.6108 43 1 9.9811 -7.4369 5.9029 44 1 10.4453 -9.1019 5.4771 45 1 9.4646 -9.0704 7.7276 46 1 8.3788 -9.9339 6.6145 47 1 8.0990 -6.9989 7.3991 48 1 7.1512 -8.3352 8.0954 49 1 5.9527 -7.1378 6.2281 50 1 6.2116 -8.8705 5.8946 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717761703.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:25 Heat of formation + Delta-G solvation = -141.210263 kcal Electronic energy + Delta-G solvation = -29273.905534 eV Core-core repulsion = 25106.705506 eV Total energy + Delta-G solvation = -4167.200028 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.01144 -40.35530 -39.19432 -38.56584 -36.45139 -35.97031 -34.91701 -33.73463 -33.61875 -31.85867 -31.32874 -28.38038 -27.81528 -26.23176 -25.40029 -23.84072 -22.57118 -21.88051 -21.29010 -21.19612 -20.32021 -19.53963 -18.46258 -17.89094 -17.76011 -17.06054 -16.79196 -16.57831 -16.47349 -15.89984 -15.76774 -15.63192 -15.25717 -15.16122 -14.97756 -14.81079 -14.62812 -14.40485 -14.21228 -14.17999 -13.91624 -13.56454 -13.33449 -13.21593 -12.99195 -12.92261 -12.75854 -12.56736 -12.40007 -12.24765 -11.99130 -11.96787 -11.80304 -11.61226 -11.50024 -11.17688 -10.92771 -10.43279 -10.40914 -10.23707 -9.97975 -9.72409 -9.33511 -8.39988 -6.01028 0.42307 1.30864 1.36794 1.45907 1.98299 2.24293 2.30796 2.42608 2.70521 3.16571 3.25119 3.62134 3.74525 3.80313 3.85305 4.03162 4.06580 4.09497 4.19126 4.23260 4.34985 4.37326 4.39600 4.48554 4.51293 4.56166 4.59058 4.65311 4.70956 4.79023 4.80348 5.00236 5.01424 5.06124 5.15453 5.18886 5.19302 5.33300 5.45222 5.53777 5.57703 5.65444 5.78385 5.92009 6.05831 6.32082 6.61195 6.71458 6.90025 6.90804 7.37778 7.41662 7.99388 8.77803 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011442 B = 0.002296 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.581433 B =12194.043917 C =13989.001648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.018 4.018 3 Si 0.967 3.033 4 H -0.258 1.258 5 H -0.277 1.277 6 H -0.227 1.227 7 C -0.327 4.327 8 H 0.052 0.948 9 N -0.590 5.590 10 C 0.448 3.552 11 O -0.615 6.615 12 C 0.061 3.939 13 N -0.676 5.676 14 C 0.079 3.921 15 H 0.123 0.877 16 C 0.047 3.953 17 O -0.591 6.591 18 C 0.141 3.859 19 N -0.704 5.704 20 C 0.538 3.462 21 O -0.582 6.582 22 C -0.247 4.247 23 C -0.019 4.019 24 C -0.122 4.122 25 C -0.112 4.112 26 C -0.122 4.122 27 C -0.114 4.114 28 C -0.095 4.095 29 H 0.278 0.722 30 H 0.390 0.610 31 H 0.123 0.877 32 H 0.078 0.922 33 H 0.349 0.651 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.397 0.603 37 H 0.075 0.925 38 H 0.047 0.953 39 H 0.412 0.588 40 H 0.140 0.860 41 H 0.069 0.931 42 H 0.097 0.903 43 H 0.058 0.942 44 H 0.070 0.930 45 H 0.075 0.925 46 H 0.064 0.936 47 H 0.063 0.937 48 H 0.082 0.918 49 H 0.082 0.918 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.324 -6.648 8.829 27.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.216 4.216 3 Si 0.787 3.213 4 H -0.183 1.183 5 H -0.203 1.203 6 H -0.150 1.150 7 C -0.457 4.457 8 H 0.071 0.929 9 N -0.232 5.232 10 C 0.236 3.764 11 O -0.499 6.499 12 C -0.072 4.072 13 N -0.309 5.309 14 C -0.031 4.031 15 H 0.141 0.859 16 C -0.032 4.032 17 O -0.399 6.399 18 C 0.017 3.983 19 N -0.354 5.354 20 C 0.329 3.671 21 O -0.466 6.466 22 C -0.268 4.268 23 C -0.021 4.021 24 C -0.159 4.159 25 C -0.150 4.150 26 C -0.159 4.159 27 C -0.152 4.152 28 C -0.132 4.132 29 H 0.088 0.912 30 H 0.226 0.774 31 H 0.141 0.859 32 H 0.096 0.904 33 H 0.168 0.832 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.247 0.753 37 H 0.093 0.907 38 H 0.066 0.934 39 H 0.248 0.752 40 H 0.157 0.843 41 H 0.087 0.913 42 H 0.115 0.885 43 H 0.077 0.923 44 H 0.089 0.911 45 H 0.094 0.906 46 H 0.083 0.917 47 H 0.082 0.918 48 H 0.100 0.900 49 H 0.100 0.900 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 24.913 -8.031 9.738 27.928 hybrid contribution -0.472 1.537 -1.660 2.311 sum 24.441 -6.494 8.079 26.548 Atomic orbital electron populations 1.69813 1.08247 1.29221 1.50422 1.26159 0.96488 1.02855 0.96137 0.85340 0.79605 0.76523 0.79873 1.18252 1.20258 1.15016 1.18983 0.81648 0.94789 1.50250 0.92941 1.42010 1.05685 1.07637 1.67909 1.21040 0.91137 0.83211 0.81026 1.90571 1.71483 1.32918 1.54965 1.21735 0.89380 0.91699 1.04338 1.60078 1.06863 1.11907 1.52011 1.22097 0.87311 0.98419 0.95244 0.85886 1.22867 1.00037 0.88303 0.92012 1.86478 1.80794 1.43996 1.28653 1.21139 0.97081 0.97373 0.82729 1.45764 1.49620 1.22427 1.17550 1.18936 0.80215 0.81159 0.86767 1.90578 1.39681 1.43079 1.73289 1.22424 1.06761 1.03130 0.94440 1.22967 0.93199 0.91763 0.94159 1.21599 0.94599 0.99703 0.99962 1.21649 0.97814 1.01411 0.94116 1.21571 0.97453 0.98970 0.97951 1.21576 0.96221 1.00164 0.97189 1.21053 0.97368 1.03051 0.91703 0.91209 0.77415 0.85932 0.90386 0.83184 0.92137 0.90525 0.75317 0.90697 0.93430 0.75187 0.84259 0.91303 0.88528 0.92273 0.91085 0.90602 0.91716 0.91786 0.89962 0.89983 0.89212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.20 13.96 21.66 0.30 -55.90 16 2 C -0.02 -0.99 5.50 84.93 0.47 -0.52 16 3 Si 0.97 37.71 27.74 68.60 1.90 39.62 16 4 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 5 H -0.28 -10.85 7.11 99.48 0.71 -10.14 16 6 H -0.23 -7.24 6.52 99.48 0.65 -6.59 16 7 C -0.33 -18.93 10.16 84.04 0.85 -18.08 16 8 H 0.05 3.66 7.39 -2.91 -0.02 3.63 16 9 N -0.59 -26.82 5.09 -306.99 -1.56 -28.39 16 10 C 0.45 19.39 7.82 87.66 0.69 20.07 16 11 O -0.62 -33.76 15.78 -3.05 -0.05 -33.81 16 12 C 0.06 1.64 5.96 85.56 0.51 2.15 16 13 N -0.68 -18.49 5.32 -495.56 -2.63 -21.13 16 14 C 0.08 1.50 2.57 44.92 0.12 1.61 16 15 H 0.12 1.64 7.80 -2.38 -0.02 1.62 16 16 C 0.05 0.72 6.72 71.98 0.48 1.20 16 17 O -0.59 -11.46 12.05 -148.98 -1.80 -13.25 16 18 C 0.14 3.31 5.26 86.38 0.45 3.77 16 19 N -0.70 -17.64 5.38 -466.71 -2.51 -20.16 16 20 C 0.54 15.26 7.62 86.57 0.66 15.92 16 21 O -0.58 -19.61 13.22 -4.06 -0.05 -19.66 16 22 C -0.25 -5.85 9.65 23.43 0.23 -5.62 16 23 C -0.02 -0.40 5.38 -17.25 -0.09 -0.49 16 24 C -0.12 -2.69 5.32 30.25 0.16 -2.52 16 25 C -0.11 -1.82 5.95 30.81 0.18 -1.64 16 26 C -0.12 -1.55 5.81 30.57 0.18 -1.37 16 27 C -0.11 -1.43 5.94 30.66 0.18 -1.24 16 28 C -0.09 -1.48 6.04 30.10 0.18 -1.30 16 29 H 0.28 15.26 8.31 -92.71 -0.77 14.49 16 30 H 0.39 14.36 5.76 -92.71 -0.53 13.82 16 31 H 0.12 2.54 8.06 -2.39 -0.02 2.52 16 32 H 0.08 1.66 7.36 -2.39 -0.02 1.64 16 33 H 0.35 11.59 7.64 -89.69 -0.69 10.91 16 34 H 0.06 0.82 7.35 -2.39 -0.02 0.80 16 35 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.40 4.20 9.12 -74.06 -0.68 3.52 16 37 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.05 1.42 7.39 -2.38 -0.02 1.40 16 39 H 0.41 9.64 8.12 -92.71 -0.75 8.89 16 40 H 0.14 2.84 7.96 -2.91 -0.02 2.82 16 41 H 0.07 1.55 8.14 -2.39 -0.02 1.54 16 42 H 0.10 2.67 4.79 -17.26 -0.08 2.59 16 43 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 47 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 48 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 49 H 0.08 1.19 7.92 -2.39 -0.02 1.17 16 50 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -83.25 401.35 -2.94 -86.19 By element: Atomic # 1 Polarization: 56.36 SS G_CDS: -1.79 Total: 54.57 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: 5.25 Total: 11.92 kcal Atomic # 7 Polarization: -119.17 SS G_CDS: -6.41 Total: -125.57 kcal Atomic # 8 Polarization: -64.82 SS G_CDS: -1.90 Total: -66.72 kcal Atomic # 14 Polarization: 37.71 SS G_CDS: 1.90 Total: 39.62 kcal Total: -83.25 -2.94 -86.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717761703.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.022 kcal (2) G-P(sol) polarization free energy of solvation -83.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds