Wall clock time and date at job start Sat Apr 11 2020 05:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86805 * 119.99986 * 2 1 4 4 H 1.48509 * 109.46814 * 270.00232 * 3 2 1 5 5 H 1.48498 * 109.47078 * 29.99777 * 3 2 1 6 6 H 1.48490 * 109.47225 * 150.00348 * 3 2 1 7 7 C 1.38810 * 120.00290 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99897 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00463 * 180.02562 * 7 2 1 10 10 C 1.46495 * 120.00232 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47069 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47006 * 295.00129 * 11 10 9 13 13 N 1.46499 * 109.47083 * 54.99952 * 11 10 9 14 14 C 1.34777 * 119.99676 * 206.49844 * 13 11 10 15 15 O 1.21273 * 120.00358 * 355.00614 * 14 13 11 16 16 C 1.50703 * 119.99658 * 174.99661 * 14 13 11 17 17 H 1.09003 * 110.33019 * 302.75625 * 16 14 13 18 18 C 1.54478 * 110.37163 * 65.00499 * 16 14 13 19 19 C 1.54501 * 104.06473 * 142.80914 * 18 16 14 20 20 C 1.54478 * 104.06212 * 0.02562 * 19 18 16 21 21 H 1.08994 * 110.37607 * 94.96369 * 20 19 18 22 22 C 1.50708 * 110.37318 * 217.18923 * 20 19 18 23 23 N 1.34774 * 119.99734 * 293.73049 * 22 20 19 24 24 O 1.21283 * 120.00008 * 113.44276 * 22 20 19 25 25 O 1.44428 * 104.90077 * 336.07511 * 20 19 18 26 26 C 1.53005 * 109.47048 * 175.00175 * 11 10 9 27 27 C 1.54269 * 110.03306 * 60.56254 * 26 11 10 28 28 C 1.54885 * 104.19376 * 217.10475 * 27 26 11 29 29 C 1.54888 * 102.74934 * 37.94592 * 28 27 26 30 30 C 1.53876 * 110.02943 * 303.39607 * 26 11 10 31 31 H 0.97001 * 119.99933 * 359.97438 * 1 2 3 32 32 H 0.97004 * 119.99730 * 359.97438 * 9 7 2 33 33 H 1.09002 * 109.47078 * 60.00343 * 10 9 7 34 34 H 1.08998 * 109.47498 * 300.00037 * 10 9 7 35 35 H 0.96999 * 119.99727 * 26.50316 * 13 11 10 36 36 H 1.09004 * 110.51144 * 24.16141 * 18 16 14 37 37 H 1.09004 * 110.62595 * 261.51104 * 18 16 14 38 38 H 1.08995 * 110.51231 * 241.35666 * 19 18 16 39 39 H 1.09008 * 110.62766 * 118.70192 * 19 18 16 40 40 H 0.97008 * 119.99515 * 179.72871 * 23 22 20 41 41 H 0.96996 * 120.00129 * 359.71420 * 23 22 20 42 42 H 1.09003 * 110.01673 * 182.00651 * 26 11 10 43 43 H 1.09001 * 110.48713 * 335.78959 * 27 26 11 44 44 H 1.08998 * 110.48100 * 98.42905 * 27 26 11 45 45 H 1.09000 * 110.75991 * 279.62712 * 28 27 26 46 46 H 1.09010 * 110.90838 * 156.33232 * 28 27 26 47 47 H 1.09002 * 110.48563 * 203.37306 * 29 28 27 48 48 H 1.09005 * 110.48545 * 80.73301 * 29 28 27 49 49 H 1.08997 * 110.03001 * 238.56997 * 30 26 11 50 50 H 1.08999 * 110.03357 * 0.02562 * 30 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4002 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 0.0000 11 6 5.6164 -2.1912 0.0000 12 1 5.8942 -1.6978 -0.9314 13 7 5.9517 -1.3231 1.1314 14 6 7.0328 -0.5207 1.0679 15 8 7.7786 -0.5826 0.1136 16 6 7.3146 0.4535 2.1826 17 1 6.4656 1.1221 2.3249 18 6 7.6281 -0.3037 3.4921 19 6 8.7324 0.5447 4.1612 20 6 8.9550 1.7145 3.1772 21 1 8.3605 2.5784 3.4740 22 6 10.4160 2.0797 3.1183 23 7 11.0239 2.6032 4.2013 24 8 11.0459 1.8976 2.0980 25 8 8.5101 1.2134 1.8978 26 6 6.3804 -3.5109 0.1257 27 6 6.0474 -4.4301 -1.0677 28 6 6.0057 -5.8509 -0.4525 29 6 5.3470 -5.6066 0.9278 30 6 5.9351 -4.2589 1.3945 31 1 -0.4850 0.8401 0.0004 32 1 3.8646 -0.3621 0.0004 33 1 3.8492 -3.0422 -0.8903 34 1 3.8485 -3.0426 0.8897 35 1 5.3957 -1.3258 1.9262 36 1 7.9958 -1.3066 3.2747 37 1 6.7446 -0.3516 4.1288 38 1 9.6461 -0.0386 4.2747 39 1 8.3964 0.9184 5.1286 40 1 11.9653 2.8346 4.1646 41 1 10.5201 2.7488 5.0173 42 1 7.4528 -3.3191 0.1623 43 1 5.0776 -4.1690 -1.4912 44 1 6.8263 -4.3660 -1.8274 45 1 7.0129 -6.2506 -0.3346 46 1 5.3949 -6.5197 -1.0591 47 1 5.6146 -6.4013 1.6243 48 1 4.2640 -5.5356 0.8265 49 1 6.7915 -4.4309 2.0464 50 1 5.1744 -3.6821 1.9204 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724096852.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:32 Heat of formation + Delta-G solvation = -113.307512 kcal Electronic energy + Delta-G solvation = -31020.026817 eV Core-core repulsion = 26854.036744 eV Total energy + Delta-G solvation = -4165.990074 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.81901 -39.84274 -38.71806 -37.65126 -35.36268 -34.15901 -33.72282 -32.43698 -31.47551 -30.54931 -29.40656 -28.58467 -26.57205 -25.15626 -23.08071 -22.39591 -21.67496 -20.93195 -20.77300 -20.22766 -18.90299 -18.33309 -17.75081 -17.40880 -16.83713 -16.66805 -16.07208 -15.84141 -15.32029 -15.11754 -14.81528 -14.58443 -14.41902 -14.25670 -13.90669 -13.85371 -13.66762 -13.21813 -12.94211 -12.71242 -12.49250 -12.19880 -12.09722 -11.96594 -11.75882 -11.33740 -11.25134 -11.02816 -11.00101 -10.96288 -10.91148 -10.60767 -10.51208 -10.44059 -10.31247 -10.07596 -10.03110 -9.96809 -9.65188 -9.50374 -8.95246 -8.78597 -7.28887 -5.82203 -3.18216 2.26066 2.57329 2.74738 3.21389 3.31186 3.37764 3.42745 3.83036 4.07130 4.34116 4.45293 4.54154 4.58047 4.68508 4.70764 4.73901 4.79475 4.88909 5.05130 5.15281 5.26182 5.29630 5.34002 5.45758 5.46765 5.54265 5.58370 5.61019 5.72539 5.75604 5.77287 5.88744 5.93997 6.01333 6.10975 6.19927 6.22798 6.25210 6.37702 6.42787 6.46672 6.49893 6.65180 6.83840 6.91897 7.67306 7.91137 7.93314 8.35742 8.37909 9.15260 9.87602 10.07084 11.35967 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008387 B = 0.004004 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3337.528009 B = 6990.872145 C = 9485.261878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.007 3.993 3 Si 0.883 3.117 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.245 4.245 8 H 0.091 0.909 9 N -0.755 5.755 10 C 0.148 3.852 11 C 0.142 3.858 12 H 0.088 0.912 13 N -0.711 5.711 14 C 0.519 3.481 15 O -0.518 6.518 16 C 0.052 3.948 17 H 0.102 0.898 18 C -0.143 4.143 19 C -0.141 4.141 20 C 0.050 3.950 21 H 0.100 0.900 22 C 0.522 3.478 23 N -0.854 5.854 24 O -0.514 6.514 25 O -0.312 6.312 26 C -0.097 4.097 27 C -0.124 4.124 28 C -0.122 4.122 29 C -0.124 4.124 30 C -0.120 4.120 31 H 0.260 0.740 32 H 0.362 0.638 33 H 0.045 0.955 34 H 0.038 0.962 35 H 0.403 0.597 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.405 0.595 41 H 0.401 0.599 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.063 0.937 45 H 0.061 0.939 46 H 0.064 0.936 47 H 0.059 0.941 48 H 0.069 0.931 49 H 0.055 0.945 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.234 -2.860 13.727 23.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.189 4.189 3 Si 0.713 3.287 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.375 4.375 8 H 0.109 0.891 9 N -0.401 5.401 10 C 0.020 3.980 11 C 0.037 3.963 12 H 0.106 0.894 13 N -0.364 5.364 14 C 0.303 3.697 15 O -0.393 6.393 16 C -0.010 4.010 17 H 0.119 0.881 18 C -0.181 4.181 19 C -0.179 4.179 20 C -0.011 4.011 21 H 0.117 0.883 22 C 0.305 3.695 23 N -0.420 5.420 24 O -0.387 6.387 25 O -0.229 6.229 26 C -0.117 4.117 27 C -0.162 4.162 28 C -0.160 4.160 29 C -0.162 4.162 30 C -0.157 4.157 31 H 0.070 0.930 32 H 0.195 0.805 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.238 0.762 36 H 0.104 0.896 37 H 0.113 0.887 38 H 0.101 0.899 39 H 0.110 0.890 40 H 0.237 0.763 41 H 0.230 0.770 42 H 0.093 0.907 43 H 0.097 0.903 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.083 0.917 47 H 0.077 0.923 48 H 0.088 0.912 49 H 0.074 0.926 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 18.872 -3.127 12.014 22.589 hybrid contribution 0.266 1.551 1.016 1.874 sum 19.139 -1.575 13.030 23.207 Atomic orbital electron populations 1.69698 1.05077 1.25850 1.57382 1.24653 0.95178 0.97112 1.01942 0.86591 0.78930 0.85098 0.78056 1.21028 1.21716 1.20541 1.19033 0.80489 0.94724 1.43237 0.89125 1.42721 1.04078 1.02144 1.91205 1.21078 0.87161 0.89740 0.99985 1.21344 0.95705 0.89640 0.89574 0.89439 1.45889 1.28042 1.42029 1.20402 1.19975 0.81369 0.81059 0.87322 1.90739 1.46650 1.68222 1.33643 1.23005 0.90560 0.93553 0.93854 0.88070 1.22922 0.99724 1.00374 0.95083 1.22904 1.00309 0.95958 0.98710 1.22920 0.93260 0.98530 0.86433 0.88272 1.20191 0.88892 0.76933 0.83472 1.43722 1.15175 1.67900 1.15228 1.90825 1.66019 1.51312 1.30509 1.89448 1.40807 1.68444 1.24195 1.22093 1.00117 0.94213 0.95288 1.22507 1.02457 0.94179 0.97018 1.22456 1.00254 0.96845 0.96435 1.22366 1.00580 0.96768 0.96470 1.22227 1.00240 0.96061 0.97181 0.93016 0.80522 0.93732 0.94386 0.76209 0.89584 0.88698 0.89880 0.88999 0.76333 0.77044 0.90749 0.90287 0.91829 0.92045 0.91727 0.92252 0.91196 0.92584 0.91044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.66 13.97 55.49 0.78 -27.88 16 2 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 3 Si 0.88 21.84 27.74 -169.99 -4.71 17.13 16 4 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.39 6.52 56.52 0.37 -6.02 16 7 C -0.25 -6.66 10.47 -15.06 -0.16 -6.82 16 8 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 9 N -0.76 -17.04 5.24 -59.91 -0.31 -17.36 16 10 C 0.15 2.63 5.27 -4.04 -0.02 2.61 16 11 C 0.14 2.23 1.86 -67.93 -0.13 2.10 16 12 H 0.09 1.59 7.61 -51.93 -0.39 1.19 16 13 N -0.71 -10.38 4.04 -53.80 -0.22 -10.59 16 14 C 0.52 8.38 7.05 -10.98 -0.08 8.30 16 15 O -0.52 -10.63 16.24 -13.62 -0.22 -10.85 16 16 C 0.05 0.67 3.71 -27.11 -0.10 0.56 16 17 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 18 C -0.14 -1.23 6.61 -25.17 -0.17 -1.39 16 19 C -0.14 -0.97 6.62 -25.17 -0.17 -1.14 16 20 C 0.05 0.50 3.71 -27.10 -0.10 0.40 16 21 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 22 C 0.52 5.76 7.34 -10.98 -0.08 5.68 16 23 N -0.85 -4.70 8.87 31.22 0.28 -4.43 16 24 O -0.51 -8.71 17.39 -13.65 -0.24 -8.95 16 25 O -0.31 -4.82 10.18 -64.20 -0.65 -5.47 16 26 C -0.10 -1.29 2.96 -89.50 -0.26 -1.56 16 27 C -0.12 -1.54 6.19 -25.07 -0.16 -1.70 16 28 C -0.12 -1.32 6.91 -24.74 -0.17 -1.49 16 29 C -0.12 -1.35 6.83 -25.07 -0.17 -1.52 16 30 C -0.12 -1.38 5.63 -25.61 -0.14 -1.53 16 31 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 32 H 0.36 8.22 5.20 -40.82 -0.21 8.01 16 33 H 0.05 0.82 6.29 -51.93 -0.33 0.49 16 34 H 0.04 0.66 6.12 -51.93 -0.32 0.34 16 35 H 0.40 5.20 8.54 -40.82 -0.35 4.85 16 36 H 0.09 0.79 7.86 -51.93 -0.41 0.38 16 37 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.59 7.87 -51.93 -0.41 0.18 16 39 H 0.09 0.32 8.14 -51.92 -0.42 -0.10 16 40 H 0.41 1.88 8.93 -40.82 -0.36 1.52 16 41 H 0.40 0.78 8.83 -40.82 -0.36 0.42 16 42 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.08 1.05 5.85 -51.93 -0.30 0.75 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 47 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 49 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.07 0.86 5.85 -51.93 -0.30 0.55 16 LS Contribution 395.92 15.07 5.97 5.97 Total: -1.00 -38.69 395.92 -9.33 -48.02 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: -7.99 Total: 11.80 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: -2.00 Total: 2.62 kcal Atomic # 7 Polarization: -60.78 SS G_CDS: 0.52 Total: -60.26 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -1.11 Total: -25.27 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.71 Total: 17.13 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -38.69 -9.33 -48.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724096852.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.292 kcal (2) G-P(sol) polarization free energy of solvation -38.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds