Wall clock time and date at job start Sat Apr 11 2020 05:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 119.99967 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00013 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99718 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.49902 * 59.93774 * 10 9 7 12 12 O 1.42903 * 109.47043 * 304.99853 * 11 10 9 13 13 C 1.53037 * 109.50098 * 299.83897 * 10 9 7 14 14 C 1.53039 * 109.53790 * 301.41488 * 13 10 9 15 15 C 1.53197 * 109.31101 * 298.63360 * 14 13 10 16 16 N 1.46923 * 108.77623 * 54.63863 * 15 14 13 17 17 C 1.34772 * 120.63629 * 126.36766 * 16 15 14 18 18 O 1.21279 * 120.00412 * 180.02562 * 17 16 15 19 19 C 1.50702 * 119.99635 * 0.02562 * 17 16 15 20 20 C 1.53004 * 109.47184 * 180.02562 * 19 17 16 21 21 H 1.08999 * 109.29551 * 55.41814 * 20 19 17 22 22 C 1.52918 * 109.29903 * 175.00152 * 20 19 17 23 23 C 1.53354 * 108.67062 * 171.06712 * 22 20 19 24 24 C 1.53069 * 108.42114 * 292.46602 * 23 22 20 25 25 C 1.50173 * 109.89390 * 48.90310 * 24 23 22 26 26 O 1.21279 * 118.24666 * 162.43754 * 25 24 23 27 27 N 1.33357 * 123.50813 * 342.41787 * 25 24 23 28 28 C 1.46927 * 118.73425 * 306.39016 * 16 15 14 29 29 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 30 30 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 31 31 H 1.09004 * 109.46961 * 64.99616 * 11 10 9 32 32 H 1.08998 * 109.47325 * 184.99670 * 11 10 9 33 33 H 0.96703 * 113.99997 * 179.97438 * 12 11 10 34 34 H 1.08998 * 109.46064 * 61.43920 * 13 10 9 35 35 H 1.09007 * 109.46171 * 181.39251 * 13 10 9 36 36 H 1.09002 * 109.49994 * 178.68398 * 14 13 10 37 37 H 1.08998 * 109.52204 * 58.59957 * 14 13 10 38 38 H 1.08992 * 109.58729 * 294.84642 * 15 14 13 39 39 H 1.09005 * 109.69921 * 174.49080 * 15 14 13 40 40 H 1.09004 * 109.47069 * 300.00135 * 19 17 16 41 41 H 1.09000 * 109.47324 * 59.99765 * 19 17 16 42 42 H 1.09003 * 109.60171 * 290.81567 * 22 20 19 43 43 H 1.08997 * 109.60544 * 51.30777 * 22 20 19 44 44 H 1.09001 * 109.67497 * 52.19931 * 23 22 20 45 45 H 1.08999 * 109.66957 * 172.73485 * 23 22 20 46 46 H 1.08996 * 109.39749 * 169.03237 * 24 23 22 47 47 H 1.09002 * 109.40490 * 288.85714 * 24 23 22 48 48 H 0.97001 * 117.94785 * 182.22762 * 27 25 24 49 49 H 1.09001 * 109.58668 * 293.81696 * 28 16 15 50 50 H 1.09003 * 109.58635 * 173.40057 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 2.9393 -3.7377 1.2488 12 8 3.7884 -2.5898 1.3078 13 6 2.9353 -3.7402 -1.2508 14 6 2.0577 -3.6259 -2.4994 15 6 1.0628 -4.7905 -2.5277 16 7 0.3144 -4.8039 -1.2635 17 6 -1.0333 -4.7997 -1.2631 18 8 -1.6395 -4.8105 -0.2127 19 6 -1.7870 -4.7817 -2.5680 20 6 -3.2912 -4.7797 -2.2881 21 1 -3.5356 -3.9395 -1.6382 22 6 -4.0506 -4.6357 -3.6076 23 6 -5.5442 -4.8594 -3.3413 24 6 -5.7520 -6.3250 -2.9519 25 6 -4.7656 -6.7161 -1.8892 26 8 -4.9873 -7.7166 -1.2406 27 7 -3.6587 -6.0224 -1.6209 28 6 1.0633 -4.8216 0.0005 29 1 -0.4850 0.8401 0.0004 30 1 0.3557 -2.3880 0.0005 31 1 2.3085 -3.7691 2.1373 32 1 3.5499 -4.6394 1.2047 33 1 4.3758 -2.5741 2.0758 34 1 3.6605 -2.9265 -1.2409 35 1 3.4612 -4.6949 -1.2627 36 1 2.6854 -3.6619 -3.3898 37 1 1.5127 -2.6822 -2.4764 38 1 1.6032 -5.7300 -2.6425 39 1 0.3711 -4.6626 -3.3604 40 1 -1.5210 -3.8857 -3.1288 41 1 -1.5266 -5.6655 -3.1503 42 1 -3.8969 -3.6346 -4.0106 43 1 -3.6908 -5.3784 -4.3196 44 1 -5.8727 -4.2132 -2.5272 45 1 -6.1152 -4.6345 -4.2422 46 1 -6.7650 -6.4587 -2.5724 47 1 -5.6075 -6.9566 -3.8284 48 1 -3.0606 -6.3665 -0.9392 49 1 1.6037 -5.7637 0.0920 50 1 0.3722 -4.7119 0.8363 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724902237.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:41 Heat of formation + Delta-G solvation = -110.476122 kcal Electronic energy + Delta-G solvation = -31750.920360 eV Core-core repulsion = 27585.053064 eV Total energy + Delta-G solvation = -4165.867295 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.68161 -39.78431 -38.03484 -36.63563 -35.77791 -33.88172 -33.29263 -32.15766 -31.47190 -31.11000 -28.85125 -27.83781 -25.46134 -25.12306 -23.62345 -23.22289 -22.37209 -21.80571 -19.31864 -19.20737 -18.32743 -17.41179 -17.33455 -16.74307 -16.34952 -16.24487 -15.77453 -15.26577 -15.04557 -14.83348 -14.26875 -14.16735 -14.01191 -13.87661 -13.81748 -13.56454 -13.20663 -13.15904 -13.04717 -12.77246 -12.45709 -12.02357 -12.00590 -11.83699 -11.65202 -11.44516 -11.24883 -11.20613 -11.14274 -10.78477 -10.75028 -10.44759 -10.39440 -10.12204 -9.94389 -9.78452 -9.53092 -9.49362 -9.01461 -8.99531 -8.76599 -8.30597 -6.87215 -5.61638 -2.88733 2.66541 2.82557 3.18300 3.33472 3.50350 3.55454 3.56615 4.35133 4.38854 4.50473 4.62248 4.67961 4.80441 4.88984 4.93844 5.06961 5.11124 5.27334 5.31784 5.33989 5.37467 5.43415 5.50338 5.57263 5.60693 5.67176 5.69913 5.71698 5.77778 5.81259 5.85078 5.89229 6.01946 6.04338 6.09243 6.09620 6.31535 6.48014 6.70424 6.78056 6.87942 6.93344 7.04356 7.44017 7.64475 8.08606 8.26290 8.33977 8.39717 8.56675 9.68413 10.19376 10.56195 11.61070 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013968 B = 0.003375 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.114392 B = 8295.365874 C = 9243.544588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.024 4.024 3 Si 0.903 3.097 4 H -0.296 1.296 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.205 4.205 8 H 0.091 0.909 9 N -0.703 5.703 10 C 0.189 3.811 11 C 0.073 3.927 12 O -0.535 6.535 13 C -0.117 4.117 14 C -0.129 4.129 15 C 0.110 3.890 16 N -0.595 5.595 17 C 0.516 3.484 18 O -0.540 6.540 19 C -0.153 4.153 20 C 0.155 3.845 21 H 0.089 0.911 22 C -0.133 4.133 23 C -0.124 4.124 24 C -0.135 4.135 25 C 0.516 3.484 26 O -0.569 6.569 27 N -0.704 5.704 28 C 0.114 3.886 29 H 0.250 0.750 30 H 0.383 0.617 31 H 0.036 0.964 32 H 0.023 0.977 33 H 0.351 0.649 34 H 0.074 0.926 35 H 0.041 0.959 36 H 0.059 0.941 37 H 0.089 0.911 38 H 0.061 0.939 39 H 0.078 0.922 40 H 0.113 0.887 41 H 0.096 0.904 42 H 0.089 0.911 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.078 0.922 46 H 0.098 0.902 47 H 0.097 0.903 48 H 0.406 0.594 49 H 0.064 0.936 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.364 -12.130 -10.142 15.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.218 4.218 3 Si 0.736 3.264 4 H -0.223 1.223 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.336 4.336 8 H 0.109 0.891 9 N -0.344 5.344 10 C 0.096 3.904 11 C -0.008 4.008 12 O -0.337 6.337 13 C -0.157 4.157 14 C -0.167 4.167 15 C -0.013 4.013 16 N -0.327 5.327 17 C 0.304 3.696 18 O -0.418 6.418 19 C -0.193 4.193 20 C 0.049 3.951 21 H 0.107 0.893 22 C -0.170 4.170 23 C -0.162 4.162 24 C -0.175 4.175 25 C 0.303 3.697 26 O -0.448 6.448 27 N -0.358 5.358 28 C -0.009 4.009 29 H 0.060 0.940 30 H 0.218 0.782 31 H 0.054 0.946 32 H 0.041 0.959 33 H 0.196 0.804 34 H 0.093 0.907 35 H 0.059 0.941 36 H 0.078 0.922 37 H 0.108 0.892 38 H 0.080 0.920 39 H 0.096 0.904 40 H 0.131 0.869 41 H 0.114 0.886 42 H 0.107 0.893 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.096 0.904 46 H 0.116 0.884 47 H 0.115 0.885 48 H 0.244 0.756 49 H 0.083 0.917 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.168 -12.257 -9.986 16.124 hybrid contribution 0.981 0.893 0.790 1.544 sum -2.187 -11.365 -9.196 14.782 Atomic orbital electron populations 1.69676 1.04963 1.25165 1.59321 1.24726 0.95348 0.97402 1.04344 0.86314 0.78340 0.84141 0.77625 1.22273 1.21644 1.21748 1.19502 0.91825 0.83085 1.39198 0.89105 1.42386 1.05347 0.99120 1.87529 1.19941 0.90434 0.87729 0.92333 1.22717 0.92119 0.86746 0.99196 1.86922 1.54666 1.43811 1.48335 1.21873 0.98357 1.00303 0.95176 1.21812 0.97627 0.99496 0.97778 1.21783 0.95119 0.99131 0.85283 1.47854 1.05153 1.72359 1.07383 1.20452 0.82099 0.75894 0.91115 1.90708 1.67403 1.50243 1.33437 1.22135 0.94878 1.05341 0.96978 1.20763 0.92299 0.87753 0.94297 0.89313 1.21961 0.95133 1.03740 0.96209 1.21661 0.96321 0.95514 1.02671 1.21647 0.99467 0.97976 0.98392 1.20181 0.82164 0.82972 0.84429 1.90743 1.75746 1.27152 1.51205 1.45704 1.23984 1.24842 1.41227 1.21711 0.94843 0.97424 0.86873 0.93978 0.78216 0.94584 0.95862 0.80427 0.90748 0.94066 0.92197 0.89214 0.92034 0.90387 0.86904 0.88576 0.89270 0.90804 0.90778 0.90379 0.88377 0.88482 0.75624 0.91743 0.88781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.25 13.06 55.49 0.72 -27.52 16 2 C -0.02 -0.68 5.50 -17.43 -0.10 -0.78 16 3 Si 0.90 22.68 29.55 -169.99 -5.02 17.65 16 4 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.20 -5.42 8.14 -15.06 -0.12 -5.54 16 8 H 0.09 2.41 5.29 -52.49 -0.28 2.14 16 9 N -0.70 -16.55 4.22 -47.12 -0.20 -16.75 16 10 C 0.19 3.45 0.68 -131.70 -0.09 3.36 16 11 C 0.07 1.26 6.09 37.16 0.23 1.49 16 12 O -0.53 -9.96 9.91 -35.23 -0.35 -10.31 16 13 C -0.12 -1.93 4.43 -26.69 -0.12 -2.05 16 14 C -0.13 -1.91 5.93 -26.61 -0.16 -2.07 16 15 C 0.11 1.32 6.34 -3.71 -0.02 1.29 16 16 N -0.60 -8.78 2.87 -172.77 -0.50 -9.28 16 17 C 0.52 7.91 7.34 -10.99 -0.08 7.83 16 18 O -0.54 -10.21 13.90 5.56 0.08 -10.14 16 19 C -0.15 -1.66 3.70 -27.88 -0.10 -1.77 16 20 C 0.15 1.72 2.65 -68.37 -0.18 1.54 16 21 H 0.09 1.19 7.96 -51.93 -0.41 0.77 16 22 C -0.13 -1.03 5.30 -26.59 -0.14 -1.17 16 23 C -0.12 -0.93 6.03 -26.51 -0.16 -1.09 16 24 C -0.13 -1.23 6.03 -28.10 -0.17 -1.40 16 25 C 0.52 6.99 7.71 -11.87 -0.09 6.89 16 26 O -0.57 -10.15 17.78 5.56 0.10 -10.05 16 27 N -0.70 -9.24 5.00 -54.85 -0.27 -9.52 16 28 C 0.11 1.85 5.14 -3.71 -0.02 1.83 16 29 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.38 10.12 7.65 -40.82 -0.31 9.81 16 31 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.35 4.86 9.12 45.56 0.42 5.27 16 34 H 0.07 1.42 6.98 -51.93 -0.36 1.06 16 35 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.09 1.70 7.53 -51.93 -0.39 1.31 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.75 5.93 -51.93 -0.31 0.45 16 40 H 0.11 1.12 7.69 -51.93 -0.40 0.72 16 41 H 0.10 0.83 7.94 -51.93 -0.41 0.42 16 42 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.49 8.11 -51.93 -0.42 0.07 16 44 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 45 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.41 6.15 6.84 -40.82 -0.28 5.87 16 49 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 50 H 0.09 1.74 7.01 -51.93 -0.36 1.38 16 LS Contribution 384.56 15.07 5.80 5.80 Total: -1.00 -35.52 384.56 -8.28 -43.81 By element: Atomic # 1 Polarization: 25.24 SS G_CDS: -7.31 Total: 17.93 kcal Atomic # 6 Polarization: 9.69 SS G_CDS: -1.33 Total: 8.37 kcal Atomic # 7 Polarization: -62.82 SS G_CDS: -0.24 Total: -63.06 kcal Atomic # 8 Polarization: -30.32 SS G_CDS: -0.17 Total: -30.49 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.52 -8.28 -43.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724902237.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.669 kcal (2) G-P(sol) polarization free energy of solvation -35.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds