Wall clock time and date at job start Sat Apr 11 2020 05:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 119.99967 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00013 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99718 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.49902 * 59.93774 * 10 9 7 12 12 O 1.42903 * 109.47043 * 304.99853 * 11 10 9 13 13 C 1.53037 * 109.50098 * 299.83897 * 10 9 7 14 14 C 1.53039 * 109.53790 * 301.41488 * 13 10 9 15 15 C 1.53197 * 109.31101 * 298.63360 * 14 13 10 16 16 N 1.46923 * 108.77623 * 54.63863 * 15 14 13 17 17 C 1.34772 * 120.63629 * 126.36766 * 16 15 14 18 18 O 1.21279 * 120.00412 * 180.02562 * 17 16 15 19 19 C 1.50702 * 119.99635 * 0.02562 * 17 16 15 20 20 C 1.53004 * 109.47184 * 180.02562 * 19 17 16 21 21 H 1.08999 * 109.29551 * 55.41814 * 20 19 17 22 22 C 1.52918 * 109.29903 * 175.00152 * 20 19 17 23 23 C 1.53354 * 108.67062 * 171.06712 * 22 20 19 24 24 C 1.53069 * 108.42114 * 292.46602 * 23 22 20 25 25 C 1.50173 * 109.89390 * 48.90310 * 24 23 22 26 26 O 1.21279 * 118.24666 * 162.43754 * 25 24 23 27 27 N 1.33357 * 123.50813 * 342.41787 * 25 24 23 28 28 C 1.46927 * 118.73425 * 306.39016 * 16 15 14 29 29 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 30 30 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 31 31 H 1.09004 * 109.46961 * 64.99616 * 11 10 9 32 32 H 1.08998 * 109.47325 * 184.99670 * 11 10 9 33 33 H 0.96703 * 113.99997 * 179.97438 * 12 11 10 34 34 H 1.08998 * 109.46064 * 61.43920 * 13 10 9 35 35 H 1.09007 * 109.46171 * 181.39251 * 13 10 9 36 36 H 1.09002 * 109.49994 * 178.68398 * 14 13 10 37 37 H 1.08998 * 109.52204 * 58.59957 * 14 13 10 38 38 H 1.08992 * 109.58729 * 294.84642 * 15 14 13 39 39 H 1.09005 * 109.69921 * 174.49080 * 15 14 13 40 40 H 1.09004 * 109.47069 * 300.00135 * 19 17 16 41 41 H 1.09000 * 109.47324 * 59.99765 * 19 17 16 42 42 H 1.09003 * 109.60171 * 290.81567 * 22 20 19 43 43 H 1.08997 * 109.60544 * 51.30777 * 22 20 19 44 44 H 1.09001 * 109.67497 * 52.19931 * 23 22 20 45 45 H 1.08999 * 109.66957 * 172.73485 * 23 22 20 46 46 H 1.08996 * 109.39749 * 169.03237 * 24 23 22 47 47 H 1.09002 * 109.40490 * 288.85714 * 24 23 22 48 48 H 0.97001 * 117.94785 * 182.22762 * 27 25 24 49 49 H 1.09001 * 109.58668 * 293.81696 * 28 16 15 50 50 H 1.09003 * 109.58635 * 173.40057 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 2.9393 -3.7377 1.2488 12 8 3.7884 -2.5898 1.3078 13 6 2.9353 -3.7402 -1.2508 14 6 2.0577 -3.6259 -2.4994 15 6 1.0628 -4.7905 -2.5277 16 7 0.3144 -4.8039 -1.2635 17 6 -1.0333 -4.7997 -1.2631 18 8 -1.6395 -4.8105 -0.2127 19 6 -1.7870 -4.7817 -2.5680 20 6 -3.2912 -4.7797 -2.2881 21 1 -3.5356 -3.9395 -1.6382 22 6 -4.0506 -4.6357 -3.6076 23 6 -5.5442 -4.8594 -3.3413 24 6 -5.7520 -6.3250 -2.9519 25 6 -4.7656 -6.7161 -1.8892 26 8 -4.9873 -7.7166 -1.2406 27 7 -3.6587 -6.0224 -1.6209 28 6 1.0633 -4.8216 0.0005 29 1 -0.4850 0.8401 0.0004 30 1 0.3557 -2.3880 0.0005 31 1 2.3085 -3.7691 2.1373 32 1 3.5499 -4.6394 1.2047 33 1 4.3758 -2.5741 2.0758 34 1 3.6605 -2.9265 -1.2409 35 1 3.4612 -4.6949 -1.2627 36 1 2.6854 -3.6619 -3.3898 37 1 1.5127 -2.6822 -2.4764 38 1 1.6032 -5.7300 -2.6425 39 1 0.3711 -4.6626 -3.3604 40 1 -1.5210 -3.8857 -3.1288 41 1 -1.5266 -5.6655 -3.1503 42 1 -3.8969 -3.6346 -4.0106 43 1 -3.6908 -5.3784 -4.3196 44 1 -5.8727 -4.2132 -2.5272 45 1 -6.1152 -4.6345 -4.2422 46 1 -6.7650 -6.4587 -2.5724 47 1 -5.6075 -6.9566 -3.8284 48 1 -3.0606 -6.3665 -0.9392 49 1 1.6037 -5.7637 0.0920 50 1 0.3722 -4.7119 0.8363 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724902237.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:40 Heat of formation + Delta-G solvation = -139.446498 kcal Electronic energy + Delta-G solvation = -31752.176610 eV Core-core repulsion = 27585.053064 eV Total energy + Delta-G solvation = -4167.123545 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.74451 -40.93451 -39.37420 -37.68911 -37.09491 -35.53188 -34.11852 -33.78957 -32.67941 -32.26683 -30.56773 -28.79669 -26.69770 -26.28436 -25.52260 -24.15424 -23.31212 -23.02796 -20.60911 -20.02168 -19.63683 -19.16664 -18.41738 -17.90650 -17.80523 -17.28188 -16.94709 -16.54365 -16.22600 -16.16010 -15.79557 -15.45570 -15.22777 -15.05002 -14.92796 -14.77454 -14.49012 -14.29966 -14.08129 -13.90354 -13.70780 -13.45219 -13.26254 -12.94112 -12.82014 -12.70668 -12.63087 -12.53617 -12.19206 -12.02392 -11.88668 -11.79804 -11.75502 -11.68674 -11.47821 -11.25763 -10.90189 -10.74494 -10.61452 -10.54992 -10.08245 -9.50649 -8.84669 -7.75838 -5.00280 1.47791 1.50312 1.55807 1.62379 1.67540 2.09214 2.36539 2.66627 3.43046 3.46974 3.59253 3.69747 3.70452 3.81368 3.95774 4.01855 4.04202 4.18804 4.23169 4.27431 4.30055 4.42716 4.48271 4.54130 4.60821 4.64532 4.66322 4.69427 4.72160 4.81995 4.91320 4.93768 4.99835 5.03690 5.06248 5.11555 5.13413 5.33520 5.37886 5.57491 5.60958 5.72407 5.77205 5.94786 6.43710 6.46165 6.53320 7.12872 7.19094 7.25280 7.53179 8.24097 8.47942 9.48141 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013968 B = 0.003375 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.114392 B = 8295.365874 C = 9243.544588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.094 4.094 3 Si 0.958 3.042 4 H -0.307 1.307 5 H -0.289 1.289 6 H -0.282 1.282 7 C -0.175 4.175 8 H 0.093 0.907 9 N -0.713 5.713 10 C 0.177 3.823 11 C 0.073 3.927 12 O -0.563 6.563 13 C -0.111 4.111 14 C -0.126 4.126 15 C 0.110 3.890 16 N -0.598 5.598 17 C 0.503 3.497 18 O -0.588 6.588 19 C -0.142 4.142 20 C 0.152 3.848 21 H 0.055 0.945 22 C -0.126 4.126 23 C -0.120 4.120 24 C -0.127 4.127 25 C 0.508 3.492 26 O -0.621 6.621 27 N -0.704 5.704 28 C 0.119 3.881 29 H 0.239 0.761 30 H 0.365 0.635 31 H 0.021 0.979 32 H 0.066 0.934 33 H 0.373 0.627 34 H 0.044 0.956 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.041 0.959 38 H 0.097 0.903 39 H 0.107 0.893 40 H 0.128 0.872 41 H 0.131 0.869 42 H 0.104 0.896 43 H 0.098 0.902 44 H 0.058 0.942 45 H 0.110 0.890 46 H 0.101 0.899 47 H 0.123 0.877 48 H 0.391 0.609 49 H 0.100 0.900 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.970 -13.840 -13.187 19.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.283 4.283 3 Si 0.790 3.210 4 H -0.234 1.234 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.307 4.307 8 H 0.111 0.889 9 N -0.351 5.351 10 C 0.085 3.915 11 C -0.007 4.007 12 O -0.369 6.369 13 C -0.150 4.150 14 C -0.164 4.164 15 C -0.012 4.012 16 N -0.329 5.329 17 C 0.293 3.707 18 O -0.469 6.469 19 C -0.182 4.182 20 C 0.047 3.953 21 H 0.073 0.927 22 C -0.163 4.163 23 C -0.158 4.158 24 C -0.167 4.167 25 C 0.297 3.703 26 O -0.505 6.505 27 N -0.354 5.354 28 C -0.005 4.005 29 H 0.048 0.952 30 H 0.196 0.804 31 H 0.039 0.961 32 H 0.084 0.916 33 H 0.221 0.779 34 H 0.063 0.937 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.060 0.940 38 H 0.115 0.885 39 H 0.125 0.875 40 H 0.146 0.854 41 H 0.149 0.851 42 H 0.123 0.877 43 H 0.116 0.884 44 H 0.077 0.923 45 H 0.128 0.872 46 H 0.120 0.880 47 H 0.141 0.859 48 H 0.227 0.773 49 H 0.118 0.882 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.683 -13.978 -13.068 19.209 hybrid contribution 0.679 1.326 1.828 2.358 sum -1.004 -12.652 -11.240 16.954 Atomic orbital electron populations 1.69843 1.06306 1.24741 1.62682 1.25359 0.96000 1.00278 1.06708 0.85408 0.76986 0.80865 0.77719 1.23420 1.21596 1.20840 1.19751 0.91873 0.84050 1.35073 0.88949 1.42519 1.04565 1.00504 1.87488 1.20364 0.91120 0.86096 0.93873 1.22665 0.92328 0.87971 0.97772 1.86798 1.55343 1.44877 1.49865 1.21767 0.97614 1.01013 0.94619 1.21746 0.97983 0.98461 0.98186 1.22030 0.95132 0.99326 0.84668 1.48022 1.05261 1.71739 1.07889 1.21327 0.82398 0.74826 0.92163 1.90688 1.68380 1.52302 1.35559 1.22172 0.93750 1.07486 0.94803 1.20868 0.93316 0.85618 0.95484 0.92688 1.21996 0.94616 1.05461 0.94237 1.21682 0.96661 0.93921 1.03516 1.21692 0.97965 0.99470 0.97532 1.21078 0.82432 0.82075 0.84744 1.90710 1.76849 1.29561 1.53419 1.45861 1.23674 1.25170 1.40724 1.21589 0.93989 0.97949 0.86979 0.95190 0.80394 0.96107 0.91619 0.77947 0.93729 0.90393 0.89349 0.94030 0.88529 0.87519 0.85416 0.85149 0.87717 0.88391 0.92306 0.87190 0.88025 0.85905 0.77332 0.88197 0.92139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.45 13.06 21.65 0.28 -61.17 16 2 C -0.09 -5.45 5.50 84.86 0.47 -4.98 16 3 Si 0.96 47.84 29.55 68.60 2.03 49.86 16 4 H -0.31 -15.73 7.11 99.48 0.71 -15.03 16 5 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 6 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 7 C -0.18 -9.43 8.14 84.03 0.68 -8.74 16 8 H 0.09 4.92 5.29 -2.91 -0.02 4.91 16 9 N -0.71 -34.25 4.22 -303.00 -1.28 -35.53 16 10 C 0.18 6.27 0.68 3.68 0.00 6.28 16 11 C 0.07 2.41 6.09 71.98 0.44 2.84 16 12 O -0.56 -20.35 9.91 -148.98 -1.48 -21.83 16 13 C -0.11 -3.36 4.43 30.62 0.14 -3.23 16 14 C -0.13 -3.39 5.93 30.67 0.18 -3.21 16 15 C 0.11 2.21 6.34 86.36 0.55 2.76 16 16 N -0.60 -16.71 2.87 -818.90 -2.35 -19.05 16 17 C 0.50 15.30 7.34 87.66 0.64 15.95 16 18 O -0.59 -23.43 13.90 -3.03 -0.04 -23.47 16 19 C -0.14 -2.82 3.70 29.85 0.11 -2.71 16 20 C 0.15 3.29 2.65 45.11 0.12 3.41 16 21 H 0.06 1.56 7.96 -2.39 -0.02 1.54 16 22 C -0.13 -1.57 5.30 30.69 0.16 -1.41 16 23 C -0.12 -1.50 6.03 30.74 0.19 -1.32 16 24 C -0.13 -2.06 6.03 29.71 0.18 -1.88 16 25 C 0.51 13.72 7.71 87.71 0.68 14.39 16 26 O -0.62 -22.84 17.78 -3.03 -0.05 -22.89 16 27 N -0.70 -18.68 5.00 -446.64 -2.23 -20.91 16 28 C 0.12 3.71 5.14 86.36 0.44 4.15 16 29 H 0.24 14.88 8.31 -92.71 -0.77 14.11 16 30 H 0.36 20.13 7.65 -92.71 -0.71 19.42 16 31 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.37 9.79 9.12 -74.05 -0.68 9.12 16 34 H 0.04 1.62 6.98 -2.39 -0.02 1.61 16 35 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 36 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.04 1.54 7.53 -2.39 -0.02 1.52 16 38 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.11 1.56 5.93 -2.38 -0.01 1.55 16 40 H 0.13 2.20 7.69 -2.38 -0.02 2.18 16 41 H 0.13 1.70 7.94 -2.39 -0.02 1.69 16 42 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.10 0.82 8.11 -2.39 -0.02 0.81 16 44 H 0.06 0.93 8.13 -2.39 -0.02 0.91 16 45 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 48 H 0.39 12.40 6.84 -92.71 -0.63 11.76 16 49 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 50 H 0.06 2.32 7.01 -2.39 -0.02 2.30 16 Total: -1.00 -84.85 384.56 -1.18 -86.03 By element: Atomic # 1 Polarization: 47.69 SS G_CDS: -1.04 Total: 46.65 kcal Atomic # 6 Polarization: 17.33 SS G_CDS: 4.98 Total: 22.31 kcal Atomic # 7 Polarization: -131.09 SS G_CDS: -5.58 Total: -136.67 kcal Atomic # 8 Polarization: -66.62 SS G_CDS: -1.57 Total: -68.19 kcal Atomic # 14 Polarization: 47.84 SS G_CDS: 2.03 Total: 49.86 kcal Total: -84.85 -1.18 -86.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724902237.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.416 kcal (2) G-P(sol) polarization free energy of solvation -84.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds