Wall clock time and date at job start Sat Apr 11 2020 05:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 120.00056 * 2 1 4 4 H 1.48501 * 109.47202 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47079 * 299.99763 * 3 2 1 6 6 H 1.48505 * 109.47178 * 59.99802 * 3 2 1 7 7 C 1.38814 * 119.99686 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99574 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00505 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00533 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.52282 * 299.91933 * 10 9 7 12 12 O 1.42895 * 109.47109 * 60.07666 * 11 10 9 13 13 C 1.53046 * 109.49769 * 59.99591 * 10 9 7 14 14 C 1.53046 * 109.53579 * 58.58725 * 13 10 9 15 15 C 1.53193 * 109.31028 * 61.36644 * 14 13 10 16 16 N 1.46927 * 108.77663 * 305.36644 * 15 14 13 17 17 C 1.34774 * 120.62692 * 233.59122 * 16 15 14 18 18 O 1.21281 * 120.00056 * 180.02562 * 17 16 15 19 19 C 1.50698 * 120.00254 * 0.02562 * 17 16 15 20 20 C 1.53002 * 109.47115 * 180.02562 * 19 17 16 21 21 H 1.08997 * 109.29891 * 304.58496 * 20 19 17 22 22 C 1.52923 * 109.29813 * 185.00292 * 20 19 17 23 23 C 1.53348 * 108.67330 * 188.93449 * 22 20 19 24 24 C 1.53077 * 108.42422 * 67.52917 * 23 22 20 25 25 C 1.50174 * 109.89158 * 311.10229 * 24 23 22 26 26 O 1.21276 * 118.24520 * 197.60535 * 25 24 23 27 27 N 1.33356 * 123.50733 * 17.58003 * 25 24 23 28 28 C 1.46919 * 118.74179 * 53.60344 * 16 15 14 29 29 H 0.97000 * 120.00075 * 359.97438 * 1 2 3 30 30 H 0.97008 * 119.99357 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.47004 * 180.02562 * 11 10 9 32 32 H 1.09002 * 109.46907 * 300.07836 * 11 10 9 33 33 H 0.96704 * 113.99879 * 179.97438 * 12 11 10 34 34 H 1.08993 * 109.45866 * 178.60899 * 13 10 9 35 35 H 1.09000 * 109.45949 * 298.57235 * 13 10 9 36 36 H 1.09001 * 109.49347 * 181.31682 * 14 13 10 37 37 H 1.08998 * 109.49687 * 301.41384 * 14 13 10 38 38 H 1.09000 * 109.58615 * 185.57833 * 15 14 13 39 39 H 1.08997 * 109.70596 * 65.21979 * 15 14 13 40 40 H 1.08998 * 109.47497 * 300.00767 * 19 17 16 41 41 H 1.09000 * 109.46870 * 60.00930 * 19 17 16 42 42 H 1.08999 * 109.60596 * 308.68732 * 22 20 19 43 43 H 1.08995 * 109.60914 * 69.01787 * 22 20 19 44 44 H 1.09003 * 109.67387 * 187.26298 * 23 22 20 45 45 H 1.09001 * 109.67665 * 307.76233 * 23 22 20 46 46 H 1.08996 * 109.39784 * 71.22949 * 24 23 22 47 47 H 1.09000 * 109.39773 * 190.97224 * 24 23 22 48 48 H 0.96998 * 117.94077 * 177.77791 * 27 25 24 49 49 H 1.09002 * 109.59216 * 186.60571 * 28 16 15 50 50 H 1.09006 * 109.58250 * 66.18466 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 2.9366 -3.7401 -1.2494 12 8 3.8669 -2.6554 -1.2507 13 6 2.9382 -3.7386 1.2499 14 6 2.0637 -3.6224 2.5005 15 6 1.0688 -4.7868 2.5330 16 7 0.3174 -4.8022 1.2705 17 6 -1.0303 -4.7987 1.2735 18 8 -1.6392 -4.8120 0.2247 19 6 -1.7809 -4.7784 2.5801 20 6 -3.2858 -4.7791 2.3039 21 1 -3.5329 -3.9409 1.6525 22 6 -4.0421 -4.6327 3.6249 23 6 -5.5360 -4.8590 3.3630 24 6 -5.7429 -6.3260 2.9777 25 6 -4.7585 -6.7185 1.9136 26 8 -4.9809 -7.7204 1.2675 27 7 -3.6533 -6.0240 1.6409 28 6 1.0631 -4.8216 0.0047 29 1 -0.4850 0.8400 0.0004 30 1 0.3555 -2.3880 0.0005 31 1 3.4807 -4.6845 -1.2487 32 1 2.3093 -3.6818 -2.1389 33 1 4.4579 -2.6452 -2.0161 34 1 3.4640 -4.6932 1.2618 35 1 3.6633 -2.9249 1.2371 36 1 2.6936 -3.6572 3.3894 37 1 1.5187 -2.6787 2.4770 38 1 0.3794 -4.6553 3.3669 39 1 1.6074 -5.7273 2.6490 40 1 -1.5185 -5.6608 3.1637 41 1 -1.5141 -3.8810 3.1384 42 1 -3.6797 -5.3732 4.3379 43 1 -3.8865 -3.6315 4.0265 44 1 -6.1051 -4.6327 4.2647 45 1 -5.8676 -4.2149 2.5485 46 1 -5.5968 -6.9550 3.8558 47 1 -6.7567 -6.4619 2.6010 48 1 -3.0565 -6.3690 0.9585 49 1 0.3699 -4.7131 -0.8295 50 1 1.6033 -5.7640 -0.0866 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724902243.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:46 Heat of formation + Delta-G solvation = -111.744906 kcal Electronic energy + Delta-G solvation = -31742.872067 eV Core-core repulsion = 27576.949753 eV Total energy + Delta-G solvation = -4165.922314 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.68272 -39.78537 -38.03857 -36.63798 -35.78657 -33.90864 -33.29366 -32.15710 -31.47331 -31.11474 -28.85655 -27.83427 -25.47418 -25.11617 -23.63701 -23.22676 -22.37399 -21.80809 -19.31950 -19.20949 -18.32368 -17.40633 -17.31981 -16.74394 -16.37800 -16.24812 -15.79102 -15.27497 -15.04731 -14.87441 -14.25922 -14.14685 -14.00511 -13.87243 -13.81868 -13.58102 -13.20654 -13.15315 -13.05687 -12.78015 -12.46624 -12.02570 -12.01218 -11.84439 -11.65375 -11.44357 -11.24843 -11.20418 -11.14069 -10.83155 -10.74690 -10.43109 -10.38645 -10.11987 -9.90095 -9.78655 -9.58547 -9.50391 -9.01650 -9.00111 -8.79057 -8.30762 -6.88433 -5.63512 -2.90854 2.66421 2.82428 3.18172 3.33378 3.48261 3.55443 3.57592 4.35042 4.38726 4.50429 4.62171 4.66845 4.80086 4.88336 4.93758 5.06926 5.11030 5.27489 5.31747 5.34012 5.37829 5.43470 5.50096 5.57278 5.60054 5.67154 5.69670 5.71881 5.77099 5.80862 5.84486 5.89118 6.02138 6.04288 6.09143 6.10244 6.32113 6.48102 6.71359 6.78047 6.87836 6.94622 7.05478 7.43909 7.64384 8.07142 8.26178 8.32254 8.39487 8.54585 9.66737 10.18141 10.54718 11.59276 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013935 B = 0.003375 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.796712 B = 8295.195465 C = 9256.322745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.024 4.024 3 Si 0.901 3.099 4 H -0.281 1.281 5 H -0.296 1.296 6 H -0.297 1.297 7 C -0.207 4.207 8 H 0.092 0.908 9 N -0.705 5.705 10 C 0.189 3.811 11 C 0.074 3.926 12 O -0.539 6.539 13 C -0.116 4.116 14 C -0.129 4.129 15 C 0.110 3.890 16 N -0.595 5.595 17 C 0.516 3.484 18 O -0.540 6.540 19 C -0.153 4.153 20 C 0.155 3.845 21 H 0.089 0.911 22 C -0.133 4.133 23 C -0.124 4.124 24 C -0.135 4.135 25 C 0.516 3.484 26 O -0.568 6.568 27 N -0.704 5.704 28 C 0.114 3.886 29 H 0.249 0.751 30 H 0.384 0.616 31 H 0.023 0.977 32 H 0.038 0.962 33 H 0.354 0.646 34 H 0.040 0.960 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.062 0.938 40 H 0.096 0.904 41 H 0.113 0.887 42 H 0.073 0.927 43 H 0.089 0.911 44 H 0.077 0.923 45 H 0.073 0.927 46 H 0.097 0.903 47 H 0.098 0.902 48 H 0.405 0.595 49 H 0.094 0.906 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.324 -12.140 10.102 15.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.218 4.218 3 Si 0.734 3.266 4 H -0.206 1.206 5 H -0.224 1.224 6 H -0.225 1.225 7 C -0.339 4.339 8 H 0.110 0.890 9 N -0.345 5.345 10 C 0.096 3.904 11 C -0.007 4.007 12 O -0.342 6.342 13 C -0.156 4.156 14 C -0.167 4.167 15 C -0.013 4.013 16 N -0.327 5.327 17 C 0.304 3.696 18 O -0.418 6.418 19 C -0.193 4.193 20 C 0.049 3.951 21 H 0.107 0.893 22 C -0.170 4.170 23 C -0.162 4.162 24 C -0.175 4.175 25 C 0.303 3.697 26 O -0.448 6.448 27 N -0.358 5.358 28 C -0.009 4.009 29 H 0.059 0.941 30 H 0.218 0.782 31 H 0.041 0.959 32 H 0.056 0.944 33 H 0.198 0.802 34 H 0.059 0.941 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.108 0.892 38 H 0.096 0.904 39 H 0.080 0.920 40 H 0.114 0.886 41 H 0.131 0.869 42 H 0.092 0.908 43 H 0.107 0.893 44 H 0.096 0.904 45 H 0.092 0.908 46 H 0.115 0.885 47 H 0.116 0.884 48 H 0.244 0.756 49 H 0.112 0.888 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.103 -12.285 9.955 16.113 hybrid contribution 0.931 0.915 -0.794 1.528 sum -2.173 -11.369 9.161 14.762 Atomic orbital electron populations 1.69697 1.04979 1.24964 1.59358 1.24735 0.95357 0.97432 1.04285 0.86178 0.78923 0.84724 0.76803 1.20645 1.22411 1.22473 1.19606 0.91955 0.83096 1.39194 0.89019 1.42413 1.05375 0.99165 1.87540 1.19939 0.90405 0.87674 0.92398 1.22719 0.91040 0.87537 0.99391 1.86832 1.50112 1.49701 1.47538 1.21850 0.98352 1.00370 0.95052 1.21818 0.97637 0.99469 0.97817 1.21783 0.95089 0.99132 0.85316 1.47850 1.05150 1.72354 1.07385 1.20453 0.82094 0.75895 0.91120 1.90708 1.67245 1.50252 1.33598 1.22133 0.94895 1.05346 0.96959 1.20761 0.92306 0.87692 0.94352 0.89314 1.21956 0.95147 1.03751 0.96190 1.21658 0.96308 0.95494 1.02693 1.21645 0.99493 0.97955 0.98390 1.20176 0.82135 0.82996 0.84430 1.90742 1.75638 1.27084 1.51375 1.45700 1.24144 1.24675 1.41236 1.21703 0.94908 0.97413 0.86829 0.94058 0.78201 0.95851 0.94382 0.80165 0.94093 0.90632 0.92198 0.89224 0.90410 0.92021 0.88579 0.86901 0.90823 0.89272 0.90384 0.90779 0.88479 0.88381 0.75627 0.88784 0.91733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.18 13.06 55.49 0.72 -27.45 16 2 C -0.02 -0.68 5.50 -17.43 -0.10 -0.77 16 3 Si 0.90 22.61 29.55 -169.99 -5.02 17.58 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.30 -7.61 7.11 56.52 0.40 -7.20 16 6 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 7 C -0.21 -5.48 8.29 -15.06 -0.12 -5.60 16 8 H 0.09 2.44 5.31 -52.49 -0.28 2.17 16 9 N -0.70 -16.54 4.22 -47.12 -0.20 -16.74 16 10 C 0.19 3.45 0.68 -131.70 -0.09 3.36 16 11 C 0.07 1.27 6.08 37.16 0.23 1.50 16 12 O -0.54 -9.89 9.98 -35.23 -0.35 -10.25 16 13 C -0.12 -1.92 4.39 -26.68 -0.12 -2.04 16 14 C -0.13 -1.92 5.93 -26.61 -0.16 -2.08 16 15 C 0.11 1.32 6.34 -3.71 -0.02 1.30 16 16 N -0.60 -8.78 2.87 -172.78 -0.50 -9.28 16 17 C 0.52 7.90 7.34 -10.99 -0.08 7.82 16 18 O -0.54 -10.20 13.90 5.56 0.08 -10.13 16 19 C -0.15 -1.66 3.70 -27.88 -0.10 -1.77 16 20 C 0.15 1.72 2.65 -68.38 -0.18 1.54 16 21 H 0.09 1.19 7.96 -51.93 -0.41 0.77 16 22 C -0.13 -1.03 5.30 -26.59 -0.14 -1.17 16 23 C -0.12 -0.93 6.03 -26.51 -0.16 -1.09 16 24 C -0.13 -1.23 6.03 -28.10 -0.17 -1.39 16 25 C 0.52 6.98 7.71 -11.87 -0.09 6.89 16 26 O -0.57 -10.14 17.78 5.56 0.10 -10.04 16 27 N -0.70 -9.24 5.00 -54.86 -0.27 -9.51 16 28 C 0.11 1.85 5.14 -3.72 -0.02 1.83 16 29 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.38 10.11 7.65 -40.82 -0.31 9.79 16 31 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.35 4.79 9.12 45.56 0.42 5.21 16 34 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 1.45 6.82 -51.93 -0.35 1.10 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.09 1.70 7.53 -51.93 -0.39 1.31 16 38 H 0.08 0.75 5.93 -51.93 -0.31 0.44 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.10 0.83 7.94 -51.93 -0.41 0.42 16 41 H 0.11 1.12 7.69 -51.93 -0.40 0.72 16 42 H 0.07 0.49 8.11 -51.93 -0.42 0.07 16 43 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 46 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.41 6.14 6.84 -40.82 -0.28 5.86 16 49 H 0.09 1.73 7.01 -51.93 -0.36 1.37 16 50 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 384.58 15.07 5.80 5.80 Total: -1.00 -35.52 384.58 -8.28 -43.80 By element: Atomic # 1 Polarization: 25.20 SS G_CDS: -7.30 Total: 17.90 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: -1.33 Total: 8.33 kcal Atomic # 7 Polarization: -62.74 SS G_CDS: -0.24 Total: -62.98 kcal Atomic # 8 Polarization: -30.24 SS G_CDS: -0.18 Total: -30.41 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.52 -8.28 -43.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724902243.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.944 kcal (2) G-P(sol) polarization free energy of solvation -35.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds