Wall clock time and date at job start Sat Apr 11 2020 05:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 120.00056 * 2 1 4 4 H 1.48501 * 109.47202 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47079 * 299.99763 * 3 2 1 6 6 H 1.48505 * 109.47178 * 59.99802 * 3 2 1 7 7 C 1.38814 * 119.99686 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99574 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00505 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00533 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.52282 * 299.91933 * 10 9 7 12 12 O 1.42895 * 109.47109 * 60.07666 * 11 10 9 13 13 C 1.53046 * 109.49769 * 59.99591 * 10 9 7 14 14 C 1.53046 * 109.53579 * 58.58725 * 13 10 9 15 15 C 1.53193 * 109.31028 * 61.36644 * 14 13 10 16 16 N 1.46927 * 108.77663 * 305.36644 * 15 14 13 17 17 C 1.34774 * 120.62692 * 233.59122 * 16 15 14 18 18 O 1.21281 * 120.00056 * 180.02562 * 17 16 15 19 19 C 1.50698 * 120.00254 * 0.02562 * 17 16 15 20 20 C 1.53002 * 109.47115 * 180.02562 * 19 17 16 21 21 H 1.08997 * 109.29891 * 304.58496 * 20 19 17 22 22 C 1.52923 * 109.29813 * 185.00292 * 20 19 17 23 23 C 1.53348 * 108.67330 * 188.93449 * 22 20 19 24 24 C 1.53077 * 108.42422 * 67.52917 * 23 22 20 25 25 C 1.50174 * 109.89158 * 311.10229 * 24 23 22 26 26 O 1.21276 * 118.24520 * 197.60535 * 25 24 23 27 27 N 1.33356 * 123.50733 * 17.58003 * 25 24 23 28 28 C 1.46919 * 118.74179 * 53.60344 * 16 15 14 29 29 H 0.97000 * 120.00075 * 359.97438 * 1 2 3 30 30 H 0.97008 * 119.99357 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.47004 * 180.02562 * 11 10 9 32 32 H 1.09002 * 109.46907 * 300.07836 * 11 10 9 33 33 H 0.96704 * 113.99879 * 179.97438 * 12 11 10 34 34 H 1.08993 * 109.45866 * 178.60899 * 13 10 9 35 35 H 1.09000 * 109.45949 * 298.57235 * 13 10 9 36 36 H 1.09001 * 109.49347 * 181.31682 * 14 13 10 37 37 H 1.08998 * 109.49687 * 301.41384 * 14 13 10 38 38 H 1.09000 * 109.58615 * 185.57833 * 15 14 13 39 39 H 1.08997 * 109.70596 * 65.21979 * 15 14 13 40 40 H 1.08998 * 109.47497 * 300.00767 * 19 17 16 41 41 H 1.09000 * 109.46870 * 60.00930 * 19 17 16 42 42 H 1.08999 * 109.60596 * 308.68732 * 22 20 19 43 43 H 1.08995 * 109.60914 * 69.01787 * 22 20 19 44 44 H 1.09003 * 109.67387 * 187.26298 * 23 22 20 45 45 H 1.09001 * 109.67665 * 307.76233 * 23 22 20 46 46 H 1.08996 * 109.39784 * 71.22949 * 24 23 22 47 47 H 1.09000 * 109.39773 * 190.97224 * 24 23 22 48 48 H 0.96998 * 117.94077 * 177.77791 * 27 25 24 49 49 H 1.09002 * 109.59216 * 186.60571 * 28 16 15 50 50 H 1.09006 * 109.58250 * 66.18466 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 2.9366 -3.7401 -1.2494 12 8 3.8669 -2.6554 -1.2507 13 6 2.9382 -3.7386 1.2499 14 6 2.0637 -3.6224 2.5005 15 6 1.0688 -4.7868 2.5330 16 7 0.3174 -4.8022 1.2705 17 6 -1.0303 -4.7987 1.2735 18 8 -1.6392 -4.8120 0.2247 19 6 -1.7809 -4.7784 2.5801 20 6 -3.2858 -4.7791 2.3039 21 1 -3.5329 -3.9409 1.6525 22 6 -4.0421 -4.6327 3.6249 23 6 -5.5360 -4.8590 3.3630 24 6 -5.7429 -6.3260 2.9777 25 6 -4.7585 -6.7185 1.9136 26 8 -4.9809 -7.7204 1.2675 27 7 -3.6533 -6.0240 1.6409 28 6 1.0631 -4.8216 0.0047 29 1 -0.4850 0.8400 0.0004 30 1 0.3555 -2.3880 0.0005 31 1 3.4807 -4.6845 -1.2487 32 1 2.3093 -3.6818 -2.1389 33 1 4.4579 -2.6452 -2.0161 34 1 3.4640 -4.6932 1.2618 35 1 3.6633 -2.9249 1.2371 36 1 2.6936 -3.6572 3.3894 37 1 1.5187 -2.6787 2.4770 38 1 0.3794 -4.6553 3.3669 39 1 1.6074 -5.7273 2.6490 40 1 -1.5185 -5.6608 3.1637 41 1 -1.5141 -3.8810 3.1384 42 1 -3.6797 -5.3732 4.3379 43 1 -3.8865 -3.6315 4.0265 44 1 -6.1051 -4.6327 4.2647 45 1 -5.8676 -4.2149 2.5485 46 1 -5.5968 -6.9550 3.8558 47 1 -6.7567 -6.4619 2.6010 48 1 -3.0565 -6.3690 0.9585 49 1 0.3699 -4.7131 -0.8295 50 1 1.6033 -5.7640 -0.0866 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724902243.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:45 Heat of formation + Delta-G solvation = -140.695400 kcal Electronic energy + Delta-G solvation = -31744.127454 eV Core-core repulsion = 27576.949753 eV Total energy + Delta-G solvation = -4167.177701 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.74526 -40.93537 -39.37645 -37.68990 -37.09456 -35.55828 -34.11881 -33.78857 -32.68313 -32.27021 -30.56934 -28.79351 -26.71018 -26.27889 -25.53982 -24.15431 -23.31349 -23.03104 -20.60955 -20.02361 -19.63611 -19.14490 -18.41785 -17.92771 -17.80581 -17.28341 -16.97419 -16.56234 -16.22300 -16.16670 -15.79620 -15.44247 -15.22596 -15.06444 -14.92861 -14.76991 -14.49099 -14.29685 -14.08598 -13.90631 -13.71003 -13.46208 -13.25977 -12.94182 -12.87858 -12.71771 -12.61259 -12.52779 -12.19042 -11.96603 -11.88675 -11.79666 -11.76846 -11.67235 -11.48803 -11.31308 -10.90399 -10.75395 -10.62195 -10.55561 -10.08271 -9.50827 -8.85932 -7.77726 -5.02388 1.46326 1.48464 1.57648 1.62336 1.67462 2.09093 2.36516 2.65301 3.42984 3.46956 3.59155 3.68997 3.70142 3.80512 3.95631 4.01046 4.04146 4.19308 4.23151 4.27407 4.30200 4.41326 4.48183 4.54645 4.61025 4.64647 4.66570 4.69354 4.72137 4.81793 4.91374 4.93850 4.99892 5.03821 5.07023 5.11506 5.13345 5.34105 5.37892 5.58021 5.61697 5.72596 5.77227 5.92963 6.43430 6.45203 6.53197 7.12064 7.19046 7.25184 7.51519 8.22831 8.46460 9.46590 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013935 B = 0.003375 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.796712 B = 8295.195465 C = 9256.322745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.093 4.093 3 Si 0.956 3.044 4 H -0.269 1.269 5 H -0.308 1.308 6 H -0.301 1.301 7 C -0.177 4.177 8 H 0.093 0.907 9 N -0.713 5.713 10 C 0.177 3.823 11 C 0.074 3.926 12 O -0.566 6.566 13 C -0.110 4.110 14 C -0.126 4.126 15 C 0.110 3.890 16 N -0.598 5.598 17 C 0.503 3.497 18 O -0.588 6.588 19 C -0.142 4.142 20 C 0.152 3.848 21 H 0.055 0.945 22 C -0.126 4.126 23 C -0.120 4.120 24 C -0.127 4.127 25 C 0.508 3.492 26 O -0.621 6.621 27 N -0.704 5.704 28 C 0.119 3.881 29 H 0.240 0.760 30 H 0.365 0.635 31 H 0.066 0.934 32 H 0.020 0.980 33 H 0.376 0.624 34 H 0.076 0.924 35 H 0.045 0.955 36 H 0.088 0.912 37 H 0.041 0.959 38 H 0.106 0.894 39 H 0.097 0.903 40 H 0.130 0.870 41 H 0.128 0.872 42 H 0.097 0.903 43 H 0.104 0.896 44 H 0.110 0.890 45 H 0.058 0.942 46 H 0.123 0.877 47 H 0.101 0.899 48 H 0.391 0.609 49 H 0.060 0.940 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.938 -13.857 13.140 19.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.283 4.283 3 Si 0.789 3.211 4 H -0.194 1.194 5 H -0.236 1.236 6 H -0.229 1.229 7 C -0.309 4.309 8 H 0.111 0.889 9 N -0.352 5.352 10 C 0.086 3.914 11 C -0.006 4.006 12 O -0.371 6.371 13 C -0.149 4.149 14 C -0.164 4.164 15 C -0.012 4.012 16 N -0.329 5.329 17 C 0.293 3.707 18 O -0.469 6.469 19 C -0.182 4.182 20 C 0.047 3.953 21 H 0.073 0.927 22 C -0.163 4.163 23 C -0.158 4.158 24 C -0.167 4.167 25 C 0.297 3.703 26 O -0.505 6.505 27 N -0.354 5.354 28 C -0.005 4.005 29 H 0.048 0.952 30 H 0.196 0.804 31 H 0.084 0.916 32 H 0.038 0.962 33 H 0.223 0.777 34 H 0.095 0.905 35 H 0.063 0.937 36 H 0.106 0.894 37 H 0.060 0.940 38 H 0.125 0.875 39 H 0.115 0.885 40 H 0.148 0.852 41 H 0.146 0.854 42 H 0.116 0.884 43 H 0.123 0.877 44 H 0.128 0.872 45 H 0.077 0.923 46 H 0.141 0.859 47 H 0.120 0.880 48 H 0.227 0.773 49 H 0.079 0.921 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.625 -14.013 13.028 19.202 hybrid contribution 0.629 1.353 -1.828 2.359 sum -0.996 -12.660 11.200 16.933 Atomic orbital electron populations 1.69854 1.06325 1.24644 1.62658 1.25364 0.96011 1.00287 1.06620 0.85271 0.78401 0.81546 0.75892 1.19387 1.23631 1.22868 1.19832 0.91941 0.84065 1.35075 0.88947 1.42548 1.04604 1.00537 1.87479 1.20357 0.91090 0.86053 0.93923 1.22649 0.91053 0.89088 0.97810 1.86722 1.50732 1.50596 1.49094 1.21740 0.97599 1.01013 0.94555 1.21751 0.97995 0.98452 0.98196 1.22029 0.95085 0.99325 0.84719 1.48019 1.05266 1.71740 1.07883 1.21325 0.82383 0.74829 0.92173 1.90689 1.68220 1.52301 1.35708 1.22170 0.93782 1.07480 0.94783 1.20865 0.93307 0.85565 0.95542 0.92678 1.21990 0.94645 1.05466 0.94217 1.21678 0.96639 0.93906 1.03544 1.21690 0.98003 0.99442 0.97530 1.21072 0.82395 0.82100 0.84749 1.90709 1.76745 1.29490 1.53586 1.45857 1.23834 1.25005 1.40729 1.21584 0.94051 0.97925 0.86954 0.95152 0.80354 0.91597 0.96175 0.77690 0.90506 0.93662 0.89356 0.94009 0.87543 0.88529 0.85160 0.85420 0.88416 0.87721 0.87199 0.92301 0.85902 0.88027 0.77331 0.92095 0.88200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.29 13.06 21.65 0.28 -61.01 16 2 C -0.09 -5.39 5.50 84.86 0.47 -4.92 16 3 Si 0.96 47.74 29.55 68.60 2.03 49.76 16 4 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 5 H -0.31 -15.77 7.11 99.48 0.71 -15.06 16 6 H -0.30 -15.00 7.11 99.48 0.71 -14.30 16 7 C -0.18 -9.49 8.29 84.03 0.70 -8.80 16 8 H 0.09 4.94 5.31 -2.91 -0.02 4.92 16 9 N -0.71 -34.23 4.22 -303.00 -1.28 -35.50 16 10 C 0.18 6.28 0.68 3.68 0.00 6.28 16 11 C 0.07 2.45 6.08 71.98 0.44 2.88 16 12 O -0.57 -20.07 9.98 -148.98 -1.49 -21.56 16 13 C -0.11 -3.34 4.39 30.63 0.13 -3.21 16 14 C -0.13 -3.40 5.93 30.67 0.18 -3.22 16 15 C 0.11 2.21 6.34 86.36 0.55 2.76 16 16 N -0.60 -16.70 2.87 -818.93 -2.35 -19.04 16 17 C 0.50 15.28 7.34 87.66 0.64 15.93 16 18 O -0.59 -23.38 13.90 -3.03 -0.04 -23.42 16 19 C -0.14 -2.82 3.70 29.85 0.11 -2.70 16 20 C 0.15 3.29 2.65 45.11 0.12 3.41 16 21 H 0.06 1.56 7.96 -2.39 -0.02 1.54 16 22 C -0.13 -1.58 5.30 30.68 0.16 -1.41 16 23 C -0.12 -1.50 6.03 30.74 0.19 -1.32 16 24 C -0.13 -2.06 6.03 29.71 0.18 -1.88 16 25 C 0.51 13.71 7.71 87.71 0.68 14.38 16 26 O -0.62 -22.81 17.78 -3.02 -0.05 -22.87 16 27 N -0.70 -18.65 5.00 -446.66 -2.23 -20.88 16 28 C 0.12 3.70 5.14 86.36 0.44 4.15 16 29 H 0.24 14.80 8.31 -92.71 -0.77 14.03 16 30 H 0.36 20.10 7.65 -92.70 -0.71 19.39 16 31 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.38 9.60 9.12 -74.05 -0.68 8.92 16 34 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.04 1.66 6.82 -2.39 -0.02 1.64 16 36 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.04 1.55 7.53 -2.39 -0.02 1.53 16 38 H 0.11 1.56 5.93 -2.39 -0.01 1.55 16 39 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.13 1.70 7.94 -2.39 -0.02 1.69 16 41 H 0.13 2.20 7.69 -2.39 -0.02 2.18 16 42 H 0.10 0.82 8.11 -2.39 -0.02 0.80 16 43 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.06 0.93 8.13 -2.39 -0.02 0.91 16 46 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 48 H 0.39 12.38 6.84 -92.71 -0.63 11.74 16 49 H 0.06 2.33 7.01 -2.39 -0.02 2.31 16 50 H 0.10 2.40 8.14 -2.38 -0.02 2.38 16 Total: -1.00 -84.74 384.58 -1.18 -85.92 By element: Atomic # 1 Polarization: 47.32 SS G_CDS: -1.04 Total: 46.28 kcal Atomic # 6 Polarization: 17.34 SS G_CDS: 4.99 Total: 22.33 kcal Atomic # 7 Polarization: -130.87 SS G_CDS: -5.58 Total: -136.44 kcal Atomic # 8 Polarization: -66.27 SS G_CDS: -1.58 Total: -67.85 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 2.03 Total: 49.76 kcal Total: -84.74 -1.18 -85.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724902243.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.775 kcal (2) G-P(sol) polarization free energy of solvation -84.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds