Wall clock time and date at job start Sat Apr 11 2020 05:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 119.99896 * 2 1 4 4 H 1.48499 * 109.47000 * 274.99196 * 3 2 1 5 5 H 1.48494 * 109.47272 * 34.99636 * 3 2 1 6 6 H 1.48503 * 109.47053 * 154.99258 * 3 2 1 7 7 C 1.38814 * 119.99936 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99936 * 185.01835 * 7 2 1 9 9 N 1.36934 * 119.99934 * 5.03195 * 7 2 1 10 10 C 1.47586 * 134.49173 * 174.45128 * 9 7 2 11 11 C 1.53945 * 86.11676 * 155.35229 * 10 9 7 12 12 C 1.52999 * 113.74501 * 269.15392 * 11 10 9 13 13 C 1.53002 * 109.47092 * 172.98461 * 12 11 10 14 14 O 1.42898 * 109.46772 * 185.02458 * 13 12 11 15 15 N 1.46505 * 113.74045 * 137.94805 * 11 10 9 16 16 C 1.34779 * 119.99796 * 64.50111 * 15 11 10 17 17 O 1.21284 * 119.99450 * 355.13342 * 16 15 11 18 18 C 1.50699 * 119.99900 * 175.13620 * 16 15 11 19 19 H 1.08991 * 109.47050 * 299.99707 * 18 16 15 20 20 C 1.52998 * 109.47158 * 59.99791 * 18 16 15 21 21 C 1.53000 * 109.46849 * 179.97438 * 20 18 16 22 22 C 1.52999 * 109.47158 * 299.99769 * 21 20 18 23 23 C 1.52998 * 109.47052 * 60.00355 * 22 21 20 24 24 H 1.09005 * 109.47087 * 59.99576 * 23 22 21 25 25 C 1.50706 * 109.47277 * 179.97438 * 23 22 21 26 26 N 1.34774 * 119.99916 * 300.00173 * 25 23 22 27 27 O 1.21277 * 119.99505 * 119.99773 * 25 23 22 28 28 C 1.52998 * 109.47188 * 299.99678 * 23 22 21 29 29 C 1.47579 * 134.49542 * 354.44285 * 9 7 2 30 30 H 0.96998 * 119.99704 * 0.02562 * 1 2 3 31 31 H 1.08996 * 113.77102 * 41.05136 * 10 9 7 32 32 H 1.09000 * 113.87156 * 269.66996 * 10 9 7 33 33 H 1.09003 * 109.46810 * 292.98454 * 12 11 10 34 34 H 1.09002 * 109.46825 * 52.98099 * 12 11 10 35 35 H 1.09000 * 109.46697 * 305.02089 * 13 12 11 36 36 H 1.09000 * 109.47401 * 65.02360 * 13 12 11 37 37 H 0.96704 * 114.00266 * 180.02562 * 14 13 12 38 38 H 0.97004 * 120.00138 * 244.49629 * 15 11 10 39 39 H 1.08996 * 109.46999 * 300.00173 * 20 18 16 40 40 H 1.09005 * 109.47087 * 60.00048 * 20 18 16 41 41 H 1.08998 * 109.47418 * 60.00220 * 21 20 18 42 42 H 1.09009 * 109.47012 * 179.97438 * 21 20 18 43 43 H 1.08999 * 109.47628 * 299.99790 * 22 21 20 44 44 H 1.09002 * 109.46779 * 180.02562 * 22 21 20 45 45 H 0.97004 * 119.99627 * 179.97438 * 26 25 23 46 46 H 0.96995 * 119.99931 * 359.72092 * 26 25 23 47 47 H 1.08999 * 109.47132 * 179.97438 * 28 23 22 48 48 H 1.08998 * 109.47376 * 299.99962 * 28 23 22 49 49 H 1.09000 * 113.77208 * 90.34020 * 29 9 7 50 50 H 1.09004 * 113.77050 * 318.94510 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3921 2.1073 -1.3948 5 1 1.5044 2.6199 0.8029 6 1 3.5965 1.4120 0.5919 7 6 2.0103 -1.2022 0.0005 8 1 3.0872 -1.2039 0.0824 9 7 1.3295 -2.3858 -0.1029 10 6 1.7288 -3.8004 -0.2363 11 6 0.3618 -4.1362 0.3870 12 6 0.3915 -4.2497 1.9125 13 6 -1.0358 -4.4101 2.4398 14 8 -1.0198 -4.3986 3.8686 15 7 -0.3190 -5.2626 -0.2565 16 6 0.2211 -6.4963 -0.2026 17 8 1.3124 -6.6589 0.3010 18 6 -0.5309 -7.6734 -0.7682 19 1 -1.4830 -7.7799 -0.2486 20 6 -0.7865 -7.4465 -2.2596 21 6 -1.5494 -8.6419 -2.8339 22 6 -0.7202 -9.9139 -2.6463 23 6 -0.4647 -10.1409 -1.1550 24 1 -1.4169 -10.2478 -0.6353 25 6 0.3515 -11.3942 -0.9701 26 7 -0.1248 -12.5784 -1.4028 27 8 1.4369 -11.3370 -0.4321 28 6 0.2983 -8.9455 -0.5806 29 6 -0.0980 -2.7594 -0.1257 30 1 -0.4849 0.8401 -0.0004 31 1 2.5770 -4.0783 0.3892 32 1 1.8347 -4.1333 -1.2688 33 1 0.9850 -5.1173 2.2007 34 1 0.8359 -3.3486 2.3352 35 1 -1.6518 -3.5874 2.0767 36 1 -1.4488 -5.3558 2.0886 37 1 -1.8929 -4.4966 4.2726 38 1 -1.1586 -5.1206 -0.7211 39 1 -1.3767 -6.5400 -2.3932 40 1 0.1658 -7.3399 -2.7793 41 1 -2.5016 -8.7489 -2.3143 42 1 -1.7319 -8.4800 -3.8963 43 1 0.2319 -9.8070 -3.1660 44 1 -1.2636 -10.7655 -3.0559 45 1 0.4008 -13.3851 -1.2841 46 1 -0.9946 -12.6246 -1.8294 47 1 0.4799 -9.1070 0.4819 48 1 1.2504 -8.8385 -1.1002 49 1 -0.5296 -2.7848 -1.1263 50 1 -0.7084 -2.2062 0.5881 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725205077.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:49 Heat of formation + Delta-G solvation = -93.930083 kcal Electronic energy + Delta-G solvation = -30920.983759 eV Core-core repulsion = 26755.833954 eV Total energy + Delta-G solvation = -4165.149805 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.66438 -39.78799 -38.30418 -36.93214 -36.36279 -34.02575 -33.64346 -32.12389 -31.12927 -31.05613 -30.11072 -27.06387 -25.02363 -24.39861 -24.04534 -22.97260 -21.66908 -21.18389 -20.10808 -19.70569 -18.58476 -17.94473 -17.16777 -16.86815 -16.75073 -16.49381 -15.55252 -15.50700 -15.14124 -14.84782 -14.68151 -14.56412 -14.23432 -13.91896 -13.82872 -13.64460 -13.38764 -13.17223 -12.70866 -12.58275 -12.39570 -11.89428 -11.72167 -11.65864 -11.49440 -11.40698 -11.03578 -10.97757 -10.92309 -10.88879 -10.75353 -10.68738 -10.57400 -10.11911 -10.01792 -9.97008 -9.85586 -9.66759 -9.52132 -9.10264 -8.85258 -8.54515 -6.89634 -5.80346 -3.10888 2.39489 2.96927 3.16935 3.39917 3.44898 3.47321 3.53171 4.31977 4.37376 4.41527 4.49121 4.50464 4.78189 4.88116 4.93268 5.01551 5.03990 5.15924 5.20721 5.24466 5.29200 5.40065 5.50100 5.53717 5.65511 5.69424 5.71337 5.73115 5.83049 5.91340 5.93783 5.96470 6.12922 6.31258 6.37511 6.47352 6.51221 6.56903 6.70326 6.78050 6.87394 7.00864 7.12607 7.34263 7.51466 7.88976 7.91033 7.96536 8.00164 8.62551 9.03244 9.68907 10.56549 11.37777 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017496 B = 0.002640 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.975849 B =10603.708426 C =11131.983176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.007 4.007 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.218 4.218 8 H 0.082 0.918 9 N -0.605 5.605 10 C 0.130 3.870 11 C 0.123 3.877 12 C -0.095 4.095 13 C 0.084 3.916 14 O -0.574 6.574 15 N -0.716 5.716 16 C 0.514 3.486 17 O -0.530 6.530 18 C -0.106 4.106 19 H 0.094 0.906 20 C -0.115 4.115 21 C -0.115 4.115 22 C -0.111 4.111 23 C -0.108 4.108 24 H 0.098 0.902 25 C 0.519 3.481 26 N -0.859 5.859 27 O -0.534 6.534 28 C -0.079 4.079 29 C 0.169 3.831 30 H 0.254 0.746 31 H 0.051 0.949 32 H 0.035 0.965 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.048 0.952 36 H 0.035 0.965 37 H 0.371 0.629 38 H 0.395 0.605 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.066 0.934 45 H 0.399 0.601 46 H 0.400 0.600 47 H 0.077 0.923 48 H 0.079 0.921 49 H 0.031 0.969 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.410 -22.812 -5.277 26.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.346 4.346 8 H 0.100 0.900 9 N -0.332 5.332 10 C 0.003 3.997 11 C 0.036 3.964 12 C -0.133 4.133 13 C 0.006 3.994 14 O -0.379 6.379 15 N -0.368 5.368 16 C 0.299 3.701 17 O -0.406 6.406 18 C -0.128 4.128 19 H 0.112 0.888 20 C -0.153 4.153 21 C -0.152 4.152 22 C -0.149 4.149 23 C -0.129 4.129 24 H 0.116 0.884 25 C 0.304 3.696 26 N -0.423 5.423 27 O -0.410 6.410 28 C -0.117 4.117 29 C 0.043 3.957 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.089 0.911 34 H 0.109 0.891 35 H 0.067 0.933 36 H 0.053 0.947 37 H 0.217 0.783 38 H 0.229 0.771 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.230 0.770 46 H 0.228 0.772 47 H 0.096 0.904 48 H 0.098 0.902 49 H 0.048 0.952 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.226 -22.240 -4.593 24.512 hybrid contribution -0.943 0.497 -0.562 1.205 sum -10.169 -21.742 -5.156 24.550 Atomic orbital electron populations 1.69804 1.05037 1.25406 1.56623 1.24791 0.95713 0.97532 1.02312 0.86097 0.78836 0.83431 0.77451 1.21667 1.21698 1.20479 1.19017 0.90794 0.81657 1.43099 0.89977 1.45671 1.01874 1.00772 1.84858 1.22771 0.94595 0.85255 0.97045 1.22932 0.95863 0.85665 0.91902 1.21327 0.95457 1.04012 0.92541 1.22117 0.98432 0.98840 0.80002 1.86512 1.34083 1.96928 1.20346 1.46217 1.26459 1.07877 1.56256 1.20466 0.86375 0.83979 0.79275 1.90718 1.20208 1.84949 1.44676 1.21362 0.99983 0.94152 0.97306 0.88798 1.21575 1.01523 0.98511 0.93641 1.21511 0.98471 0.93854 1.01370 1.21561 1.01231 0.98456 0.93671 1.21380 0.99814 0.93192 0.98517 0.88399 1.20720 0.86546 0.85306 0.77039 1.43921 1.24025 1.09949 1.64436 1.90792 1.21649 1.86508 1.42005 1.21128 0.98148 0.89751 1.02697 1.22476 0.88987 0.86383 0.97830 0.93642 0.93098 0.94713 0.91093 0.89123 0.93327 0.94709 0.78295 0.77111 0.90968 0.91006 0.91450 0.91105 0.91099 0.91558 0.77019 0.77207 0.90409 0.90239 0.95151 0.90430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.78 11.48 55.49 0.64 -26.14 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 3 Si 0.91 22.26 29.56 -169.99 -5.02 17.24 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.22 -6.16 10.70 -15.06 -0.16 -6.33 16 8 H 0.08 2.27 7.83 -52.49 -0.41 1.86 16 9 N -0.61 -15.57 3.54 -177.70 -0.63 -16.20 16 10 C 0.13 2.89 7.40 -2.97 -0.02 2.87 16 11 C 0.12 2.33 0.67 -134.03 -0.09 2.24 16 12 C -0.09 -1.84 4.86 -26.73 -0.13 -1.97 16 13 C 0.08 1.34 6.77 37.16 0.25 1.60 16 14 O -0.57 -9.20 13.66 -35.23 -0.48 -9.68 16 15 N -0.72 -10.45 4.57 -49.07 -0.22 -10.68 16 16 C 0.51 7.61 6.82 -10.98 -0.07 7.53 16 17 O -0.53 -10.21 14.44 5.55 0.08 -10.13 16 18 C -0.11 -1.09 2.54 -91.77 -0.23 -1.32 16 19 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 20 C -0.11 -0.95 5.10 -26.73 -0.14 -1.08 16 21 C -0.11 -0.65 5.92 -26.73 -0.16 -0.81 16 22 C -0.11 -0.65 5.10 -26.73 -0.14 -0.79 16 23 C -0.11 -0.83 2.52 -91.77 -0.23 -1.06 16 24 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 25 C 0.52 4.99 7.43 -10.98 -0.08 4.90 16 26 N -0.86 -4.48 8.76 31.22 0.27 -4.20 16 27 O -0.53 -7.98 16.82 5.56 0.09 -7.89 16 28 C -0.08 -0.90 3.06 -26.73 -0.08 -0.99 16 29 C 0.17 3.79 6.58 -2.98 -0.02 3.78 16 30 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.05 1.18 8.10 -51.93 -0.42 0.76 16 32 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 1.45 7.25 -51.93 -0.38 1.07 16 34 H 0.09 2.05 8.02 -51.93 -0.42 1.63 16 35 H 0.05 0.78 7.45 -51.93 -0.39 0.39 16 36 H 0.03 0.49 7.84 -51.93 -0.41 0.08 16 37 H 0.37 3.89 9.12 45.56 0.42 4.31 16 38 H 0.39 4.60 8.00 -40.82 -0.33 4.28 16 39 H 0.07 0.54 7.46 -51.93 -0.39 0.16 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.23 7.57 -51.93 -0.39 -0.16 16 45 H 0.40 1.84 8.93 -40.82 -0.36 1.48 16 46 H 0.40 0.80 8.26 -40.82 -0.34 0.47 16 47 H 0.08 1.06 8.06 -51.93 -0.42 0.65 16 48 H 0.08 1.11 8.06 -51.93 -0.42 0.69 16 49 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 50 H 0.08 1.90 6.71 -51.93 -0.35 1.55 16 LS Contribution 397.23 15.07 5.99 5.99 Total: -1.00 -37.58 397.23 -8.20 -45.78 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -7.51 Total: 7.64 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: -1.40 Total: 8.28 kcal Atomic # 7 Polarization: -57.29 SS G_CDS: 0.06 Total: -57.23 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -0.31 Total: -27.70 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -37.58 -8.20 -45.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725205077.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.151 kcal (2) G-P(sol) polarization free energy of solvation -37.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds