Wall clock time and date at job start Sat Apr 11 2020 05:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 119.99896 * 2 1 4 4 H 1.48499 * 109.47000 * 274.99196 * 3 2 1 5 5 H 1.48494 * 109.47272 * 34.99636 * 3 2 1 6 6 H 1.48503 * 109.47053 * 154.99258 * 3 2 1 7 7 C 1.38814 * 119.99936 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99936 * 185.01835 * 7 2 1 9 9 N 1.36934 * 119.99934 * 5.03195 * 7 2 1 10 10 C 1.47586 * 134.49173 * 174.45128 * 9 7 2 11 11 C 1.53945 * 86.11676 * 155.35229 * 10 9 7 12 12 C 1.52999 * 113.74501 * 269.15392 * 11 10 9 13 13 C 1.53002 * 109.47092 * 172.98461 * 12 11 10 14 14 O 1.42898 * 109.46772 * 185.02458 * 13 12 11 15 15 N 1.46505 * 113.74045 * 137.94805 * 11 10 9 16 16 C 1.34779 * 119.99796 * 64.50111 * 15 11 10 17 17 O 1.21284 * 119.99450 * 355.13342 * 16 15 11 18 18 C 1.50699 * 119.99900 * 175.13620 * 16 15 11 19 19 H 1.08991 * 109.47050 * 299.99707 * 18 16 15 20 20 C 1.52998 * 109.47158 * 59.99791 * 18 16 15 21 21 C 1.53000 * 109.46849 * 179.97438 * 20 18 16 22 22 C 1.52999 * 109.47158 * 299.99769 * 21 20 18 23 23 C 1.52998 * 109.47052 * 60.00355 * 22 21 20 24 24 H 1.09005 * 109.47087 * 59.99576 * 23 22 21 25 25 C 1.50706 * 109.47277 * 179.97438 * 23 22 21 26 26 N 1.34774 * 119.99916 * 300.00173 * 25 23 22 27 27 O 1.21277 * 119.99505 * 119.99773 * 25 23 22 28 28 C 1.52998 * 109.47188 * 299.99678 * 23 22 21 29 29 C 1.47579 * 134.49542 * 354.44285 * 9 7 2 30 30 H 0.96998 * 119.99704 * 0.02562 * 1 2 3 31 31 H 1.08996 * 113.77102 * 41.05136 * 10 9 7 32 32 H 1.09000 * 113.87156 * 269.66996 * 10 9 7 33 33 H 1.09003 * 109.46810 * 292.98454 * 12 11 10 34 34 H 1.09002 * 109.46825 * 52.98099 * 12 11 10 35 35 H 1.09000 * 109.46697 * 305.02089 * 13 12 11 36 36 H 1.09000 * 109.47401 * 65.02360 * 13 12 11 37 37 H 0.96704 * 114.00266 * 180.02562 * 14 13 12 38 38 H 0.97004 * 120.00138 * 244.49629 * 15 11 10 39 39 H 1.08996 * 109.46999 * 300.00173 * 20 18 16 40 40 H 1.09005 * 109.47087 * 60.00048 * 20 18 16 41 41 H 1.08998 * 109.47418 * 60.00220 * 21 20 18 42 42 H 1.09009 * 109.47012 * 179.97438 * 21 20 18 43 43 H 1.08999 * 109.47628 * 299.99790 * 22 21 20 44 44 H 1.09002 * 109.46779 * 180.02562 * 22 21 20 45 45 H 0.97004 * 119.99627 * 179.97438 * 26 25 23 46 46 H 0.96995 * 119.99931 * 359.72092 * 26 25 23 47 47 H 1.08999 * 109.47132 * 179.97438 * 28 23 22 48 48 H 1.08998 * 109.47376 * 299.99962 * 28 23 22 49 49 H 1.09000 * 113.77208 * 90.34020 * 29 9 7 50 50 H 1.09004 * 113.77050 * 318.94510 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3921 2.1073 -1.3948 5 1 1.5044 2.6199 0.8029 6 1 3.5965 1.4120 0.5919 7 6 2.0103 -1.2022 0.0005 8 1 3.0872 -1.2039 0.0824 9 7 1.3295 -2.3858 -0.1029 10 6 1.7288 -3.8004 -0.2363 11 6 0.3618 -4.1362 0.3870 12 6 0.3915 -4.2497 1.9125 13 6 -1.0358 -4.4101 2.4398 14 8 -1.0198 -4.3986 3.8686 15 7 -0.3190 -5.2626 -0.2565 16 6 0.2211 -6.4963 -0.2026 17 8 1.3124 -6.6589 0.3010 18 6 -0.5309 -7.6734 -0.7682 19 1 -1.4830 -7.7799 -0.2486 20 6 -0.7865 -7.4465 -2.2596 21 6 -1.5494 -8.6419 -2.8339 22 6 -0.7202 -9.9139 -2.6463 23 6 -0.4647 -10.1409 -1.1550 24 1 -1.4169 -10.2478 -0.6353 25 6 0.3515 -11.3942 -0.9701 26 7 -0.1248 -12.5784 -1.4028 27 8 1.4369 -11.3370 -0.4321 28 6 0.2983 -8.9455 -0.5806 29 6 -0.0980 -2.7594 -0.1257 30 1 -0.4849 0.8401 -0.0004 31 1 2.5770 -4.0783 0.3892 32 1 1.8347 -4.1333 -1.2688 33 1 0.9850 -5.1173 2.2007 34 1 0.8359 -3.3486 2.3352 35 1 -1.6518 -3.5874 2.0767 36 1 -1.4488 -5.3558 2.0886 37 1 -1.8929 -4.4966 4.2726 38 1 -1.1586 -5.1206 -0.7211 39 1 -1.3767 -6.5400 -2.3932 40 1 0.1658 -7.3399 -2.7793 41 1 -2.5016 -8.7489 -2.3143 42 1 -1.7319 -8.4800 -3.8963 43 1 0.2319 -9.8070 -3.1660 44 1 -1.2636 -10.7655 -3.0559 45 1 0.4008 -13.3851 -1.2841 46 1 -0.9946 -12.6246 -1.8294 47 1 0.4799 -9.1070 0.4819 48 1 1.2504 -8.8385 -1.1002 49 1 -0.5296 -2.7848 -1.1263 50 1 -0.7084 -2.2062 0.5881 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725205077.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:48 Heat of formation + Delta-G solvation = -126.663344 kcal Electronic energy + Delta-G solvation = -30922.403180 eV Core-core repulsion = 26755.833954 eV Total energy + Delta-G solvation = -4166.569226 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.75199 -40.91059 -39.61675 -37.91733 -37.70381 -35.28546 -34.71980 -33.84722 -32.32653 -31.73910 -31.37995 -29.00355 -26.86338 -25.56022 -24.94064 -24.23254 -23.22166 -22.02923 -21.10634 -20.54269 -20.11459 -18.80919 -18.71339 -18.35913 -17.76548 -17.43507 -17.12272 -16.68158 -16.36242 -16.02455 -16.00492 -15.62419 -15.56230 -15.17651 -15.02825 -14.67394 -14.52171 -14.39864 -14.16758 -13.60889 -13.38594 -13.34884 -13.34072 -13.08152 -12.89443 -12.79023 -12.60023 -12.31754 -12.22645 -12.13373 -12.02741 -11.75545 -11.63763 -11.57235 -11.37818 -11.30179 -10.94118 -10.87193 -10.75985 -10.60112 -10.46559 -10.01094 -8.96472 -7.95991 -5.28105 1.44812 1.45894 1.55108 1.68342 1.76409 2.14320 2.47944 2.67972 3.15441 3.23199 3.37950 3.59871 3.61651 3.77471 3.79905 3.99558 4.13530 4.21090 4.24579 4.31141 4.37128 4.38459 4.47356 4.48906 4.50589 4.64517 4.70605 4.72172 4.73580 4.84712 5.03304 5.11874 5.12360 5.14642 5.17676 5.18905 5.20204 5.29674 5.32098 5.39688 5.46459 5.56105 5.74357 5.88522 5.94734 6.52907 6.71074 6.89465 6.93355 7.41751 7.42528 7.54429 8.49081 9.21346 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017496 B = 0.002640 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.975849 B =10603.708426 C =11131.983176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.056 4.056 3 Si 0.977 3.023 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.274 1.274 7 C -0.240 4.240 8 H 0.075 0.925 9 N -0.632 5.632 10 C 0.126 3.874 11 C 0.156 3.844 12 C -0.090 4.090 13 C 0.094 3.906 14 O -0.594 6.594 15 N -0.703 5.703 16 C 0.510 3.490 17 O -0.580 6.580 18 C -0.092 4.092 19 H 0.133 0.867 20 C -0.115 4.115 21 C -0.107 4.107 22 C -0.108 4.108 23 C -0.098 4.098 24 H 0.134 0.866 25 C 0.513 3.487 26 N -0.835 5.835 27 O -0.601 6.601 28 C -0.076 4.076 29 C 0.178 3.822 30 H 0.253 0.747 31 H 0.032 0.968 32 H 0.038 0.962 33 H 0.056 0.944 34 H 0.050 0.950 35 H 0.051 0.949 36 H 0.065 0.935 37 H 0.397 0.603 38 H 0.415 0.585 39 H 0.086 0.914 40 H 0.047 0.953 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.049 0.951 44 H 0.102 0.898 45 H 0.404 0.596 46 H 0.420 0.580 47 H 0.046 0.954 48 H 0.039 0.961 49 H 0.037 0.963 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.919 -24.422 -6.573 29.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.250 4.250 3 Si 0.805 3.195 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.199 1.199 7 C -0.368 4.368 8 H 0.093 0.907 9 N -0.359 5.359 10 C 0.000 4.000 11 C 0.068 3.932 12 C -0.129 4.129 13 C 0.016 3.984 14 O -0.403 6.403 15 N -0.356 5.356 16 C 0.298 3.702 17 O -0.458 6.458 18 C -0.113 4.113 19 H 0.151 0.849 20 C -0.153 4.153 21 C -0.144 4.144 22 C -0.146 4.146 23 C -0.119 4.119 24 H 0.152 0.848 25 C 0.299 3.701 26 N -0.399 5.399 27 O -0.482 6.482 28 C -0.115 4.115 29 C 0.052 3.948 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.247 0.753 38 H 0.253 0.747 39 H 0.105 0.895 40 H 0.065 0.935 41 H 0.114 0.886 42 H 0.103 0.897 43 H 0.067 0.933 44 H 0.120 0.880 45 H 0.235 0.765 46 H 0.252 0.748 47 H 0.065 0.935 48 H 0.058 0.942 49 H 0.054 0.946 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.834 -23.913 -5.934 27.780 hybrid contribution 0.201 0.914 -0.143 0.947 sum -12.633 -22.999 -6.077 26.934 Atomic orbital electron populations 1.69941 1.06057 1.25930 1.57254 1.25557 0.96704 1.00440 1.02283 0.85095 0.77768 0.79257 0.77418 1.21136 1.21533 1.19899 1.19283 0.91010 0.83181 1.43327 0.90670 1.45954 1.03603 1.01204 1.85139 1.22829 0.96092 0.84062 0.97043 1.22155 0.93434 0.85929 0.91707 1.21189 0.97756 1.01239 0.92695 1.21950 0.95609 1.00429 0.80363 1.86450 1.36655 1.97037 1.20167 1.45947 1.26911 1.06704 1.56052 1.21400 0.85921 0.84776 0.78090 1.90715 1.22708 1.85635 1.46791 1.21366 1.00224 0.90668 0.99002 0.84900 1.21633 1.01179 1.00913 0.91579 1.21514 0.98813 0.91706 1.02385 1.21601 1.00924 1.00353 0.91740 1.21360 1.00021 0.90343 1.00188 0.84788 1.21128 0.85829 0.86897 0.76253 1.43719 1.24657 1.08820 1.62663 1.90774 1.24579 1.87511 1.45325 1.21005 0.97518 0.92446 1.00522 1.22360 0.87166 0.87695 0.97568 0.93844 0.94987 0.94472 0.92552 0.93146 0.93073 0.91685 0.75300 0.74701 0.89513 0.93453 0.88597 0.89728 0.93257 0.87958 0.76458 0.74823 0.93475 0.94193 0.94553 0.92516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.55 11.48 21.65 0.25 -55.31 16 2 C -0.06 -3.21 5.50 84.86 0.47 -2.74 16 3 Si 0.98 46.39 29.56 68.60 2.03 48.42 16 4 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 5 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 6 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 7 C -0.24 -14.00 10.70 84.03 0.90 -13.10 16 8 H 0.08 4.34 7.83 -2.91 -0.02 4.31 16 9 N -0.63 -33.73 3.54 -716.11 -2.54 -36.27 16 10 C 0.13 5.87 7.40 86.48 0.64 6.51 16 11 C 0.16 6.01 0.67 5.36 0.00 6.01 16 12 C -0.09 -3.59 4.86 30.59 0.15 -3.45 16 13 C 0.09 2.92 6.77 71.98 0.49 3.41 16 14 O -0.59 -18.37 13.66 -148.98 -2.03 -20.40 16 15 N -0.70 -19.77 4.57 -427.53 -1.95 -21.73 16 16 C 0.51 14.93 6.82 87.66 0.60 15.53 16 17 O -0.58 -23.36 14.44 -3.04 -0.04 -23.41 16 18 C -0.09 -1.68 2.54 -11.54 -0.03 -1.71 16 19 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 20 C -0.12 -1.58 5.10 30.59 0.16 -1.42 16 21 C -0.11 -0.70 5.92 30.59 0.18 -0.52 16 22 C -0.11 -0.88 5.10 30.59 0.16 -0.73 16 23 C -0.10 -1.27 2.52 -11.54 -0.03 -1.30 16 24 H 0.13 0.84 8.14 -2.38 -0.02 0.82 16 25 C 0.51 9.33 7.43 87.66 0.65 9.98 16 26 N -0.83 -6.58 8.76 -173.53 -1.52 -8.10 16 27 O -0.60 -18.79 16.82 -3.02 -0.05 -18.84 16 28 C -0.08 -1.74 3.06 30.60 0.09 -1.65 16 29 C 0.18 8.09 6.58 86.48 0.57 8.66 16 30 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 31 H 0.03 1.59 8.10 -2.39 -0.02 1.57 16 32 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.06 2.41 7.25 -2.39 -0.02 2.39 16 34 H 0.05 2.40 8.02 -2.39 -0.02 2.38 16 35 H 0.05 1.57 7.45 -2.39 -0.02 1.56 16 36 H 0.07 1.64 7.84 -2.39 -0.02 1.62 16 37 H 0.40 7.46 9.12 -74.05 -0.68 6.78 16 38 H 0.42 8.54 8.00 -92.71 -0.74 7.80 16 39 H 0.09 0.96 7.46 -2.39 -0.02 0.95 16 40 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 41 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 42 H 0.08 0.43 8.14 -2.38 -0.02 0.41 16 43 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.10 0.16 7.57 -2.39 -0.02 0.14 16 45 H 0.40 2.95 8.93 -92.71 -0.83 2.13 16 46 H 0.42 -0.07 8.26 -92.71 -0.77 -0.83 16 47 H 0.05 1.35 8.06 -2.39 -0.02 1.33 16 48 H 0.04 1.21 8.06 -2.39 -0.02 1.19 16 49 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 50 H 0.06 2.83 6.71 -2.38 -0.02 2.82 16 Total: -1.00 -89.24 397.23 -2.89 -92.14 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: -2.02 Total: 20.02 kcal Atomic # 6 Polarization: 18.49 SS G_CDS: 4.99 Total: 23.49 kcal Atomic # 7 Polarization: -115.64 SS G_CDS: -5.76 Total: -121.40 kcal Atomic # 8 Polarization: -60.53 SS G_CDS: -2.13 Total: -62.66 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -89.24 -2.89 -92.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725205077.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.527 kcal (2) G-P(sol) polarization free energy of solvation -89.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds