Wall clock time and date at job start Sat Apr 11 2020 05:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86803 * 119.99954 * 2 1 4 4 H 1.48498 * 109.47064 * 239.99841 * 3 2 1 5 5 H 1.48507 * 109.47091 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47332 * 119.99572 * 3 2 1 7 7 C 1.38943 * 120.00317 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00357 * 180.02562 * 7 2 1 9 9 N 1.37099 * 120.00045 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00082 * 180.02562 * 9 7 2 11 11 O 1.21288 * 120.00085 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99959 * 179.97438 * 10 9 7 13 13 N 1.46897 * 109.47527 * 179.97438 * 12 10 9 14 14 C 1.47447 * 110.99941 * 283.76486 * 13 12 10 15 15 C 1.54321 * 107.23035 * 236.73539 * 14 13 12 16 16 C 1.55141 * 103.17986 * 337.63204 * 15 14 13 17 17 C 1.47841 * 111.00439 * 162.91664 * 13 12 10 18 18 H 1.09003 * 110.37138 * 27.53727 * 17 13 12 19 19 C 1.52992 * 110.37526 * 265.19861 * 17 13 12 20 20 N 1.46500 * 109.47342 * 61.65976 * 19 17 13 21 21 C 1.34782 * 120.00143 * 186.61346 * 20 19 17 22 22 O 1.21283 * 119.99794 * 359.97438 * 21 20 19 23 23 C 1.50694 * 120.00213 * 180.02562 * 21 20 19 24 24 C 1.53185 * 109.54105 * 299.82194 * 23 21 20 25 25 C 1.53104 * 109.15409 * 183.23957 * 24 23 21 26 26 O 1.42905 * 109.48853 * 57.47374 * 25 24 23 27 27 C 1.42899 * 114.09799 * 298.88700 * 26 25 24 28 28 C 1.53093 * 109.41787 * 61.15755 * 27 26 25 29 29 H 0.97002 * 120.00276 * 0.02562 * 1 2 3 30 30 H 0.97000 * 119.99982 * 359.97438 * 9 7 2 31 31 H 1.09005 * 109.47184 * 59.99224 * 12 10 9 32 32 H 1.09001 * 109.47296 * 299.99411 * 12 10 9 33 33 H 1.08999 * 109.88418 * 117.33562 * 14 13 12 34 34 H 1.08993 * 110.02487 * 356.21918 * 14 13 12 35 35 H 1.09000 * 110.69928 * 96.09908 * 15 14 13 36 36 H 1.09002 * 110.70405 * 219.15997 * 15 14 13 37 37 H 1.08992 * 110.99618 * 153.82905 * 16 15 14 38 38 H 1.08999 * 110.98875 * 277.65022 * 16 15 14 39 39 H 1.09005 * 109.47640 * 181.65940 * 19 17 13 40 40 H 1.09004 * 109.47563 * 301.65641 * 19 17 13 41 41 H 0.96999 * 119.99739 * 6.61264 * 20 19 17 42 42 H 1.09005 * 109.54370 * 59.99138 * 23 21 20 43 43 H 1.09000 * 109.51596 * 303.05659 * 24 23 21 44 44 H 1.08998 * 109.51956 * 63.24444 * 24 23 21 45 45 H 1.08994 * 109.41109 * 297.49260 * 25 24 23 46 46 H 1.08997 * 109.48878 * 177.50245 * 25 24 23 47 47 H 1.09002 * 109.48200 * 301.17707 * 27 26 25 48 48 H 1.08998 * 109.49129 * 181.14791 * 27 26 25 49 49 H 1.08999 * 109.52504 * 182.48615 * 28 27 26 50 50 H 1.08999 * 109.52493 * 62.29187 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2830 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2032 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5577 0.0016 11 8 3.2103 -3.5577 0.0021 12 6 1.2439 -4.8629 0.0022 13 7 2.1985 -5.9795 0.0027 14 6 2.7908 -6.1688 -1.3343 15 6 2.5026 -7.6239 -1.7600 16 6 2.2614 -8.3467 -0.4085 17 6 1.5400 -7.2393 0.4087 18 1 0.4799 -7.2118 0.1565 19 6 1.7260 -7.4783 1.9083 20 7 1.0989 -6.3872 2.6582 21 6 1.2508 -6.3140 3.9954 22 8 1.9064 -7.1517 4.5780 23 6 0.6053 -5.1919 4.7669 24 6 1.1428 -3.8486 4.2638 25 6 0.5430 -2.7200 5.1068 26 8 0.8602 -2.9332 6.4838 27 6 0.3410 -4.1517 7.0203 28 6 0.9343 -5.3380 6.2558 29 1 -0.4850 0.8400 -0.0004 30 1 0.3535 -2.3907 0.0005 31 1 0.6175 -4.9212 -0.8880 32 1 0.6170 -4.9201 0.8920 33 1 3.8670 -6.0017 -1.2900 34 1 2.3372 -5.4779 -2.0447 35 1 1.6126 -7.6727 -2.3873 36 1 3.3614 -8.0513 -2.2776 37 1 1.6209 -9.2186 -0.5409 38 1 3.2056 -8.6251 0.0593 39 1 1.2609 -8.4242 2.1860 40 1 2.7902 -7.5146 2.1413 41 1 0.5742 -5.7174 2.1923 42 1 -0.4752 -5.2277 4.6270 43 1 2.2288 -3.8333 4.3565 44 1 0.8635 -3.7128 3.2190 45 1 -0.5396 -2.7097 4.9806 46 1 0.9560 -1.7649 4.7824 47 1 -0.7443 -4.1602 6.9190 48 1 0.6083 -4.2281 8.0742 49 1 0.5061 -6.2661 6.6342 50 1 2.0159 -5.3535 6.3898 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731817381.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:17 Heat of formation + Delta-G solvation = -117.439275 kcal Electronic energy + Delta-G solvation = -31416.206153 eV Core-core repulsion = 27250.036913 eV Total energy + Delta-G solvation = -4166.169240 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.36143 -39.43506 -38.37395 -37.62531 -34.61184 -33.96485 -33.67253 -32.05613 -31.17377 -31.09662 -29.97072 -26.87673 -26.29366 -24.70753 -23.97812 -23.42444 -21.56175 -20.88188 -20.40518 -19.66179 -19.17044 -17.91611 -17.39172 -16.42780 -16.21955 -15.94513 -15.89383 -15.45014 -15.28916 -14.98781 -14.68715 -14.54233 -14.17336 -14.07970 -13.86164 -13.69407 -13.41253 -13.10649 -12.92434 -12.56174 -12.33340 -12.24328 -12.06905 -11.72233 -11.53047 -11.44620 -11.35031 -11.28476 -11.22224 -11.07547 -11.00631 -10.71231 -10.61036 -10.46729 -10.44502 -10.24599 -9.87074 -9.52453 -9.38178 -8.95228 -8.53312 -8.01032 -7.96568 -6.45363 -3.86036 2.72424 3.17107 3.21903 3.24165 3.28395 3.82643 3.86260 3.92885 4.18758 4.51566 4.57524 4.61975 4.68193 4.77713 4.88428 4.99350 5.03966 5.11223 5.16024 5.19166 5.21658 5.23964 5.44081 5.44994 5.50849 5.54100 5.60014 5.61730 5.71344 5.74090 5.75445 5.79486 5.82568 5.89262 5.98447 6.09103 6.13749 6.15786 6.22318 6.28924 6.38454 6.52143 7.14512 7.17089 7.22240 7.51826 7.54847 8.02108 8.30292 8.57892 9.15177 9.49643 10.02132 10.72068 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.006710 B = 0.005247 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4171.643525 B = 5335.458063 C = 9025.671113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.025 3.975 3 Si 0.927 3.073 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.297 4.297 8 H 0.101 0.899 9 N -0.566 5.566 10 C 0.443 3.557 11 O -0.569 6.569 12 C 0.041 3.959 13 N -0.497 5.497 14 C 0.055 3.945 15 C -0.143 4.143 16 C -0.117 4.117 17 C 0.055 3.945 18 H 0.059 0.941 19 C 0.137 3.863 20 N -0.722 5.722 21 C 0.521 3.479 22 O -0.546 6.546 23 C -0.110 4.110 24 C -0.144 4.144 25 C 0.064 3.936 26 O -0.383 6.383 27 C 0.061 3.939 28 C -0.133 4.133 29 H 0.272 0.728 30 H 0.390 0.610 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.397 0.603 42 H 0.095 0.905 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.052 0.948 46 H 0.104 0.896 47 H 0.049 0.951 48 H 0.094 0.906 49 H 0.077 0.923 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.034 -13.420 4.192 14.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.177 4.177 3 Si 0.754 3.246 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.427 4.427 8 H 0.119 0.881 9 N -0.203 5.203 10 C 0.228 3.772 11 O -0.452 6.452 12 C -0.091 4.091 13 N -0.222 5.222 14 C -0.072 4.072 15 C -0.182 4.182 16 C -0.156 4.156 17 C -0.054 4.054 18 H 0.077 0.923 19 C 0.013 3.987 20 N -0.376 5.376 21 C 0.308 3.692 22 O -0.423 6.423 23 C -0.131 4.131 24 C -0.182 4.182 25 C -0.012 4.012 26 O -0.301 6.301 27 C -0.016 4.016 28 C -0.172 4.172 29 H 0.081 0.919 30 H 0.223 0.777 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.235 0.765 42 H 0.113 0.887 43 H 0.098 0.902 44 H 0.101 0.899 45 H 0.070 0.930 46 H 0.122 0.878 47 H 0.067 0.933 48 H 0.112 0.888 49 H 0.095 0.905 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.370 -13.589 5.061 14.888 hybrid contribution -1.366 0.870 -1.167 1.996 sum -4.736 -12.720 3.894 14.120 Atomic orbital electron populations 1.69589 1.05860 1.28230 1.50700 1.25204 0.95593 0.99564 0.97342 0.85972 0.78842 0.80638 0.79134 1.19989 1.20983 1.19830 1.19612 0.93274 0.82140 1.47630 0.88068 1.41846 1.08996 1.04537 1.64938 1.19670 0.88487 0.84302 0.84787 1.90543 1.13532 1.86807 1.54279 1.22203 0.93881 0.92465 1.00530 1.63122 1.30572 1.01730 1.26741 1.22744 1.01666 0.94430 0.88372 1.22841 1.01855 0.96407 0.97076 1.22705 1.01054 0.96608 0.95194 1.22950 0.97267 0.90721 0.94486 0.92339 1.21345 0.99368 0.88971 0.89023 1.46183 1.54030 1.30103 1.07271 1.20524 0.80406 0.86075 0.82230 1.90666 1.40687 1.41729 1.69224 1.21401 1.01133 0.94356 0.96245 1.22165 1.02632 0.92718 1.00729 1.22595 0.99090 0.98834 0.80708 1.87956 1.77277 1.39465 1.25437 1.22593 0.97144 0.83991 0.97912 1.22002 1.03335 0.98964 0.92855 0.91855 0.77706 0.92956 0.90739 0.89893 0.92680 0.91689 0.90670 0.90684 0.90128 0.91689 0.90358 0.76453 0.88722 0.90160 0.89915 0.92955 0.87832 0.93297 0.88782 0.90455 0.90129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.35 13.05 55.50 0.72 -22.62 16 2 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 3 Si 0.93 20.53 29.55 -169.99 -5.02 15.51 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.30 -7.89 9.68 -14.94 -0.14 -8.04 16 8 H 0.10 2.87 7.16 -52.49 -0.38 2.49 16 9 N -0.57 -13.34 5.29 -10.96 -0.06 -13.40 16 10 C 0.44 9.77 7.62 -10.99 -0.08 9.69 16 11 O -0.57 -14.84 15.46 5.55 0.09 -14.75 16 12 C 0.04 0.67 4.92 -4.98 -0.02 0.64 16 13 N -0.50 -7.59 4.33 -224.51 -0.97 -8.56 16 14 C 0.06 0.81 6.03 -2.83 -0.02 0.79 16 15 C -0.14 -1.50 6.93 -24.91 -0.17 -1.67 16 16 C -0.12 -1.15 6.53 -24.34 -0.16 -1.31 16 17 C 0.05 0.64 2.67 -65.94 -0.18 0.46 16 18 H 0.06 0.62 7.81 -51.93 -0.41 0.21 16 19 C 0.14 1.74 5.40 -4.05 -0.02 1.72 16 20 N -0.72 -9.61 5.28 -60.30 -0.32 -9.92 16 21 C 0.52 7.67 7.16 -10.99 -0.08 7.59 16 22 O -0.55 -9.68 15.95 5.55 0.09 -9.59 16 23 C -0.11 -1.38 2.61 -91.59 -0.24 -1.61 16 24 C -0.14 -2.02 5.30 -26.58 -0.14 -2.17 16 25 C 0.06 0.87 6.84 37.21 0.25 1.12 16 26 O -0.38 -5.37 10.77 -35.23 -0.38 -5.75 16 27 C 0.06 0.67 6.84 37.21 0.25 0.92 16 28 C -0.13 -1.61 4.74 -26.59 -0.13 -1.74 16 29 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 30 H 0.39 8.74 7.90 -40.82 -0.32 8.42 16 31 H 0.05 0.77 7.76 -51.93 -0.40 0.37 16 32 H 0.07 1.05 4.97 -51.93 -0.26 0.79 16 33 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 34 H 0.05 0.85 7.37 -51.93 -0.38 0.47 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.81 8.06 -51.93 -0.42 0.39 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.08 1.17 8.11 -51.93 -0.42 0.75 16 41 H 0.40 4.94 4.87 -40.82 -0.20 4.74 16 42 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 44 H 0.08 1.20 7.68 -51.93 -0.40 0.80 16 45 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 47 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 49 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 50 H 0.08 1.13 8.03 -51.93 -0.42 0.71 16 LS Contribution 395.48 15.07 5.96 5.96 Total: -1.00 -32.18 395.48 -9.07 -41.26 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: -8.21 Total: 14.94 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: -0.97 Total: 6.94 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: -0.62 Total: -54.51 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -0.20 Total: -30.10 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.18 -9.07 -41.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731817381.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.182 kcal (2) G-P(sol) polarization free energy of solvation -32.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds